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ONTOLOGY REPORT - ANNOTATIONS

Term:vacuolar transport
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Accession:GO:0007034 term browser browse the term
Definition:The directed movement of substances into, out of or within a vacuole.

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show annotations for term's descendants           Sort by:
vacuolar transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp1a charged multivesicular body protein 1A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936641:366,563...376,303
Ensembl chrNW_004936641:366,569...376,337 		JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004937062:133,361...136,329 JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936610:2,282,925...2,320,554
Ensembl chrNW_004936610:2,281,066...2,321,211 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936712:1,023,994...1,044,727
Ensembl chrNW_004936712:1,023,989...1,044,728 		JBrowse link
G Chmp4a charged multivesicular body protein 4A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936722:341,066...344,928
Ensembl chrNW_004936722:341,307...345,104 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936561:6,756,360...6,798,964
Ensembl chrNW_004936561:6,756,307...6,799,290 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936656:2,531,654...2,558,106
Ensembl chrNW_004936656:2,531,576...2,558,106 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936524:1,804,643...1,820,491 JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936594:4,769,409...4,775,186
Ensembl chrNW_004936594:4,769,466...4,774,293 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936555:6,730,284...6,757,816
Ensembl chrNW_004936555:6,745,738...6,756,467 		JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936504:12,053,470...12,103,346 JBrowse link
G Ndfip2 Nedd4 family interacting protein 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936511:2,063,630...2,123,214
Ensembl chrNW_004936511:2,063,144...2,124,037 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936478:14,296,191...14,454,650
Ensembl chrNW_004936478:14,293,108...14,454,707 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5921629|PMID:28675177) MGI
Ensembl		 PMID:28675177 GO_REF:0000107 MGI:5921629 NCBI chrNW_004936497:2,126,064...2,161,451
Ensembl chrNW_004936497:2,126,061...2,161,485 		JBrowse link
endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aktip AKT interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:6,139,875...6,150,132
Ensembl chrNW_004936475:6,139,875...6,150,130 		JBrowse link
G Atg14 autophagy related 14 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22797916) MGI
Ensembl		 PMID:22797916 GO_REF:0000107 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Becn2 beclin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23954414) MGI
Ensembl		 PMID:23954414 GO_REF:0000107 NCBI chrNW_004936526:8,532,991...8,534,271
Ensembl chrNW_004936526:8,533,009...8,534,271 		JBrowse link
G Bin1 bridging integrator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:44,128,308...44,185,739
Ensembl chrNW_004936469:44,127,970...44,185,246 		JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (MGI:4457791|PMID:20551175) MGI PMID:20551175 MGI:4457791 NCBI chrNW_004936472:23,137,936...23,141,205 JBrowse link
G Chmp3 charged multivesicular body protein 3 ISO RGD PMID:18076377 RGD:4892661 NCBI chrNW_004936712:1,023,994...1,044,727
Ensembl chrNW_004936712:1,023,989...1,044,728 		JBrowse link
G Chmp5 charged multivesicular body protein 5 acts_upstream_of_or_within ISO (MGI:3622513|PMID:16567502) MGI PMID:16567502 MGI:3622513 NCBI chrNW_004936524:1,804,643...1,820,491 JBrowse link
G Dennd3 DENN domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:10,217,404...10,264,911
Ensembl chrNW_004936470:10,217,394...10,264,956 		JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,844,778...8,853,442
Ensembl chrNW_004936536:8,844,575...8,851,146 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936517:841,402...941,054
Ensembl chrNW_004936517:841,411...939,581 		JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:280,718...306,311
Ensembl chrNW_004936842:280,718...306,285 		JBrowse link
G Gprasp1 G protein-coupled receptor associated sorting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936813:1,208,018...1,213,224
Ensembl chrNW_004936813:1,208,373...1,212,548 		JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate ISO RGD PMID:19808888 RGD:4892648 NCBI chrNW_004936594:5,285,678...5,301,267
Ensembl chrNW_004936594:5,285,551...5,301,233 		JBrowse link
G Hook1 hook microtubule tethering protein 1 involved_in ISO (PMID:18799622) UniProt PMID:18799622 NCBI chrNW_004936522:2,102,787...2,159,525 JBrowse link
G Hook2 hook microtubule tethering protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,869,622...1,879,213
Ensembl chrNW_004936659:1,869,622...1,879,213 		JBrowse link
G Hook3 hook microtubule tethering protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937108:873...110,949
Ensembl chrNW_004937108:60...110,939 		JBrowse link
G Kif13a kinesin family member 13A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:3,612,104...3,723,275
Ensembl chrNW_004936552:3,613,657...3,722,973 		JBrowse link
G LOC101960702 lysosomal acid lipase/cholesteryl ester hydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:4,975,296...5,008,938
Ensembl chrNW_004936601:4,975,211...5,008,962 		JBrowse link
G LOC101970059 uncharacterized LOC101970059 ISO RGD PMID:19808888 RGD:4892648 NCBI chrNW_004936528:752,572...809,127
Ensembl chrNW_004936528:752,694...808,888 		JBrowse link
G LOC110599009 trafficking kinesin-binding protein 1 involved_in ISO (PMID:18675823) UniProt PMID:18675823 NCBI chrNW_004936473:30,568,151...30,660,753 JBrowse link
G Mgrn1 mahogunin ring finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:4,647,550...4,693,143
Ensembl chrNW_004936530:4,652,464...4,693,999 		JBrowse link
G Mtm1 myotubularin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (MGI:5448516|PMID:21718402) UniProt PMID:21718402 MGI:5448516 NCBI chrNW_004936670:2,315,930...2,338,489
Ensembl chrNW_004936670:2,315,442...2,338,509 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Rhob ras homolog family member B involved_in ISO (PMID:10508588) UniProt PMID:10508588 NCBI chrNW_004936493:10,987,801...10,990,207 JBrowse link
G Rilp Rab interacting lysosomal protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,775,942...7,779,563
Ensembl chrNW_004936538:7,775,942...7,779,365 		JBrowse link
G Scyl2 SCY1 like pseudokinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:13,502,854...13,564,886
Ensembl chrNW_004936492:13,501,663...13,564,867 		JBrowse link
G Snapin SNAP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22797916) MGI
Ensembl		 PMID:22797916 GO_REF:0000107 NCBI chrNW_004936580:3,449,585...3,464,709
Ensembl chrNW_004936580:3,462,987...3,464,214 		JBrowse link
G Snx16 sorting nexin 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936656:2,457,418...2,500,281
Ensembl chrNW_004936656:2,457,409...2,502,847 		JBrowse link
G Snx27 sorting nexin 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:1,815,582...1,893,076
Ensembl chrNW_004936580:1,815,651...1,893,753 		JBrowse link
G Sort1 sortilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:832,651...901,658
Ensembl chrNW_004936704:837,057...901,392 		JBrowse link
G Stx7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chrNW_004936560:464,667...512,322
Ensembl chrNW_004936560:464,617...513,009 		JBrowse link
G Stx8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chrNW_004936595:2,328,763...2,578,788
Ensembl chrNW_004936595:2,328,740...2,578,791 		JBrowse link
G Tgfbrap1 transforming growth factor beta receptor associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936764:675,615...747,613
Ensembl chrNW_004936764:701,116...747,621 		JBrowse link
G Trak2 trafficking kinesin protein 2 ISO RGD PMID:17062640 RGD:13208835 NCBI chrNW_004936726:649,413...708,816
Ensembl chrNW_004936726:649,418...708,820 		JBrowse link
G Vamp7 vesicle associated membrane protein 7 involved_in ISO (PMID:10888671)
PMID:15133481		 RGD
UniProt		 PMID:10888671 PMID:15133481 RGD:4892614 NCBI chrNW_004936958:345,055...393,384 JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO
IEA		 (PMID:25783203) UniProt
Ensembl		 PMID:25783203 GO_REF:0000107 NCBI chrNW_004936488:6,247,329...6,277,494
Ensembl chrNW_004936488:6,247,296...6,277,506 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004936542:4,022,928...4,035,577
Ensembl chrNW_004936542:4,023,134...4,035,260 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:15,879,324...15,900,544
Ensembl chrNW_004936485:15,879,327...15,900,544 		JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,289,487...4,297,634
Ensembl chrNW_004936471:4,289,415...4,298,852 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:2,227,305...2,257,725
Ensembl chrNW_004936558:2,227,253...2,257,722 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004936483:16,007,448...16,031,353
Ensembl chrNW_004936483:16,007,465...16,032,392 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:5,457,363...5,512,966
Ensembl chrNW_004936471:5,457,035...5,512,625 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:14,296,191...14,454,650
Ensembl chrNW_004936478:14,293,108...14,454,707 		JBrowse link
endosome to lysosome transport of low-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP ribosylation factor like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936577:4,430,939...4,475,186
Ensembl chrNW_004936577:4,430,898...4,475,212 		JBrowse link
G Tpcn2 two pore segment channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:1,301,937...1,343,046
Ensembl chrNW_004936599:1,318,169...1,343,106 		JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyst lysosomal trafficking regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:16,750,976...16,915,999
Ensembl chrNW_004936484:16,763,511...16,916,022 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,565,473...2,578,721
Ensembl chrNW_004936588:2,565,461...2,578,624 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:2,126,064...2,161,451
Ensembl chrNW_004936497:2,126,061...2,161,485 		JBrowse link
Golgi to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:746,408...836,495
Ensembl chrNW_004936677:749,379...836,480 		JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:21,983,248...22,063,133
Ensembl chrNW_004936475:21,983,248...22,063,181 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:246,335...250,278
Ensembl chrNW_004936543:246,335...254,975 		JBrowse link
G Ccdc91 coiled-coil domain containing 91 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936760:413,066...735,508
Ensembl chrNW_004936760:486,621...735,719 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G Ehd3 EH domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:1,864,836...1,896,079
Ensembl chrNW_004936493:1,864,755...1,896,097 		JBrowse link
G Gak cyclin G associated kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,254,109...22,300,827
Ensembl chrNW_004936477:22,253,471...22,300,932 		JBrowse link
G Lamp1 lysosomal associated membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:377,359...389,121
Ensembl chrNW_004936472:378,173...389,381 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:6478861|PMID:24638062) ARUK-UCL PMID:24638062 MGI:6478861 NCBI chrNW_004936474:14,102,080...14,119,592
Ensembl chrNW_004936474:14,102,423...14,119,558 		JBrowse link
G Rbsn rabenosyn, RAB effector involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:586,284...607,088
Ensembl chrNW_004936602:586,169...607,158 		JBrowse link
G Sort1 sortilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:832,651...901,658
Ensembl chrNW_004936704:837,057...901,392 		JBrowse link
Golgi to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936742:1,007,684...1,088,272
Ensembl chrNW_004936742:1,007,973...1,088,394 		JBrowse link
G Ap3s2 adaptor related protein complex 3 subunit sigma 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936483:15,613,474...15,660,862
Ensembl chrNW_004936483:15,613,474...15,660,838 		JBrowse link
late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP ribosylation factor like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936577:4,430,939...4,475,186
Ensembl chrNW_004936577:4,430,898...4,475,212 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,074,655...2,101,846
Ensembl chrNW_004936611:2,078,716...2,101,881 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:366,563...376,303
Ensembl chrNW_004936641:366,569...376,337 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004936626:391,942...394,440 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004937062:133,361...136,329 JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936610:2,282,925...2,320,554
Ensembl chrNW_004936610:2,281,066...2,321,211 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936712:1,023,994...1,044,727
Ensembl chrNW_004936712:1,023,989...1,044,728 		JBrowse link
G Chmp4a charged multivesicular body protein 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936722:341,066...344,928
Ensembl chrNW_004936722:341,307...345,104 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,756,360...6,798,964
Ensembl chrNW_004936561:6,756,307...6,799,290 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936656:2,531,654...2,558,106
Ensembl chrNW_004936656:2,531,576...2,558,106 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004936524:1,804,643...1,820,491 JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:4,769,409...4,775,186
Ensembl chrNW_004936594:4,769,466...4,774,293 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,730,284...6,757,816
Ensembl chrNW_004936555:6,745,738...6,756,467 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,685,902...1,732,361
Ensembl chrNW_004936541:1,685,923...1,732,420 		JBrowse link
G Snapin SNAP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4879078|PMID:20920792) MGI
Ensembl		 PMID:20920792 GO_REF:0000107 MGI:4879078 NCBI chrNW_004936580:3,449,585...3,464,709
Ensembl chrNW_004936580:3,462,987...3,464,214 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:5,457,363...5,512,966
Ensembl chrNW_004936471:5,457,035...5,512,625 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:14,296,191...14,454,650
Ensembl chrNW_004936478:14,293,108...14,454,707 		JBrowse link
late endosome to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp7 charged multivesicular body protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,730,284...6,757,816
Ensembl chrNW_004936555:6,745,738...6,756,467 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936529:4,162,276...4,232,471
Ensembl chrNW_004936529:4,162,112...4,232,510 		JBrowse link
late endosome to vacuole transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vta1 vesicle trafficking 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936625:3,761,512...3,829,043
Ensembl chrNW_004936625:3,758,374...3,829,179 		JBrowse link
lysosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12837691) MGI
Ensembl		 PMID:12837691 GO_REF:0000107 NCBI chrNW_004936726:940,696...1,015,771
Ensembl chrNW_004936726:939,341...1,015,799 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:3,968,216...3,980,821
Ensembl chrNW_004936474:3,968,506...3,980,815 		JBrowse link
G Grn granulin precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:793,548...800,271
Ensembl chrNW_004936541:793,523...800,217 		JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:257,636...297,797
Ensembl chrNW_004936570:258,820...297,762 		JBrowse link
G Igf2r insulin like growth factor 2 receptor involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936489:11,447,043...11,523,695
Ensembl chrNW_004936489:11,447,038...11,524,174 		JBrowse link
G LOC101956126 heat shock 70 kDa protein 1 involved_in ISO (MGI:6274951|PMID:27789271) UniProt PMID:27789271 MGI:6274951 NCBI chrNW_004936727:1,732,323...1,735,128 JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in ISO (MGI:5701557|PMID:26370502) UniProt PMID:26370502 MGI:5701557 NCBI chrNW_004936646:1,326,900...1,407,236
Ensembl chrNW_004936646:1,327,374...1,406,456 		JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936870:300,742...310,876
Ensembl chrNW_004936870:302,166...307,134 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:17,254,777...17,374,725
Ensembl chrNW_004936471:17,252,234...17,374,804 		JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:6,271,339...6,300,202
Ensembl chrNW_004936522:6,272,507...6,299,917 		JBrowse link
G Psap prosaposin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:6,975,844...7,009,460
Ensembl chrNW_004936521:6,975,770...7,009,136 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISO (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:5467668 NCBI chrNW_004936538:4,923,740...4,928,798
Ensembl chrNW_004936538:4,923,424...4,928,809 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 acts_upstream_of_or_within ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004936471:5,154,294...5,195,083 JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5588048|PMID:25066864) MGI
Ensembl		 PMID:25066864 GO_REF:0000107 MGI:5588048 NCBI chrNW_004936761:1,663,099...1,689,580
Ensembl chrNW_004936761:1,662,738...1,685,156 		JBrowse link
G Tmem251 transmembrane protein 251 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936733:1,113,681...1,115,446
Ensembl chrNW_004936733:1,113,755...1,118,094 		JBrowse link
G Vps51 VPS51 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chrNW_004936599:4,258,239...4,274,823
Ensembl chrNW_004936599:4,258,239...4,274,831 		JBrowse link
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chrNW_004936476:25,594,168...25,612,044
Ensembl chrNW_004936476:25,594,114...25,612,066 		JBrowse link
G Vps53 VPS53 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chrNW_004936538:7,067,332...7,207,852
Ensembl chrNW_004936538:7,067,327...7,205,768 		JBrowse link
G Vps54 VPS54 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chrNW_004936491:8,835,397...8,922,403
Ensembl chrNW_004936491:8,833,285...8,922,711 		JBrowse link
mitochondrion to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:50,476...77,797
Ensembl chrNW_004936475:50,321...78,097 		JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936712:1,023,994...1,044,727
Ensembl chrNW_004936712:1,023,989...1,044,728 		JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:12,233,943...12,310,014
Ensembl chrNW_004936492:12,233,992...12,308,690 		JBrowse link
negative regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:50,476...77,797
Ensembl chrNW_004936475:50,321...78,097 		JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:1,223,646...1,262,577
Ensembl chrNW_004936588:1,222,466...1,262,676 		JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:4,125,182...4,232,239
Ensembl chrNW_004936492:4,125,173...4,236,062 		JBrowse link
positive regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP ribosylation factor 1 ISO RGD PMID:21421027 RGD:9684860 NCBI chrNW_004936864:117,510...119,612 JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2679144|PMID:14557411) MGI
Ensembl		 PMID:14557411 GO_REF:0000107 MGI:2679144 NCBI chrNW_004936549:5,964,240...6,205,245
Ensembl chrNW_004936549:5,965,143...6,204,379 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:246,335...250,278
Ensembl chrNW_004936543:246,335...254,975 		JBrowse link
G Gcc2 GRIP and coiled-coil domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936829:13,235...61,556
Ensembl chrNW_004936829:13,229...62,510 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:531,844...548,487
Ensembl chrNW_004936594:532,342...548,440 		JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,285,678...5,301,267
Ensembl chrNW_004936594:5,285,551...5,301,233 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:3803048|PMID:18619870) ARUK-UCL PMID:18619870 MGI:3803048 NCBI chrNW_004936474:14,102,080...14,119,592
Ensembl chrNW_004936474:14,102,423...14,119,558 		JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor ISO chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chrNW_004936508:3,928,467...3,983,481
Ensembl chrNW_004936508:3,928,466...3,983,890 		JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936870:300,742...310,876
Ensembl chrNW_004936870:302,166...307,134 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25327288) MGI
Ensembl		 PMID:25327288 GO_REF:0000107 NCBI chrNW_004936728:376,915...402,539
Ensembl chrNW_004936728:376,852...402,539 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5921629|PMID:28675177) MGI
Ensembl		 PMID:28675177 GO_REF:0000107 MGI:5921629 NCBI chrNW_004936502:10,080,169...10,105,155
Ensembl chrNW_004936502:10,080,145...10,105,328 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:17,254,777...17,374,725
Ensembl chrNW_004936471:17,252,234...17,374,804 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176 		JBrowse link
G Scarb2 scavenger receptor class B member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:167,482...225,827
Ensembl chrNW_004936676:170,010...225,457 		JBrowse link
G Snx16 sorting nexin 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936656:2,457,418...2,500,281
Ensembl chrNW_004936656:2,457,409...2,502,847 		JBrowse link
G Sorl1 sortilin related receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:6,192,407...6,352,835
Ensembl chrNW_004936542:6,192,407...6,352,424 		JBrowse link
G Sort1 sortilin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4368056|PMID:19732768) MGI
Ensembl		 PMID:19732768 GO_REF:0000107 MGI:4368056 NCBI chrNW_004936704:832,651...901,658
Ensembl chrNW_004936704:837,057...901,392 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:19,432,311...19,444,223
Ensembl chrNW_004936475:19,432,229...19,444,223 		JBrowse link
G Vps53 VPS53 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,067,332...7,207,852
Ensembl chrNW_004936538:7,067,327...7,205,768 		JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:8,835,397...8,922,403
Ensembl chrNW_004936491:8,833,285...8,922,711 		JBrowse link
G Zfyve16 zinc finger FYVE-type containing 16 involved_in ISO (PMID:11546807) UniProt PMID:11546807 NCBI chrNW_004936549:8,082,464...8,110,116 JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:499,745...513,515
Ensembl chrNW_004936675:499,199...513,836 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:7,577,192...7,581,598
Ensembl chrNW_004936542:7,577,149...7,581,923 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 PMID:18644871 MGI
Ensembl		 PMID:18644871 GO_REF:0000107 RGD:10412301 NCBI chrNW_004936479:9,584,221...9,622,330
Ensembl chrNW_004936479:9,584,221...9,610,420 		JBrowse link
protein targeting to vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mon1a MON1 homolog A, secretory trafficking associated involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936529:1,513,796...1,527,121
Ensembl chrNW_004936529:1,513,753...1,527,506 		JBrowse link
G Mon1b MON1 homolog B, secretory trafficking associated involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936475:25,628,093...25,641,205
Ensembl chrNW_004936475:25,628,251...25,635,877 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936478:14,296,191...14,454,650
Ensembl chrNW_004936478:14,293,108...14,454,707 		JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:8,835,397...8,922,403
Ensembl chrNW_004936491:8,833,285...8,922,711 		JBrowse link
G Vps8 VPS8 subunit of CORVET complex involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936578:4,842,899...5,091,439
Ensembl chrNW_004936578:4,840,636...5,091,474 		JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:29420192) UniProt PMID:29420192 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:1,381,864...1,406,736
Ensembl chrNW_004936750:1,381,851...1,407,323 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101974834 vacuolar protein-sorting-associated protein 36-like involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936506:3,026,351...3,028,114 JBrowse link
G Vps28 VPS28 subunit of ESCRT-I involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936470:7,829,207...7,833,213
Ensembl chrNW_004936470:7,830,114...7,833,047 		JBrowse link
G Vps36 vacuolar protein sorting 36 homolog involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936565:4,898,969...4,921,411 JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vamp7 vesicle associated membrane protein 7 acts_upstream_of_or_within ISO (MGI:3774712|PMID:18227281) MGI PMID:18227281 MGI:3774712 NCBI chrNW_004936958:345,055...393,384 JBrowse link
zinc ion import into lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc30a2 solute carrier family 30 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:10,581,504...10,589,364
Ensembl chrNW_004936474:10,581,480...10,589,442 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15015
    localization 4777
      cellular localization 3073
        intracellular transport 1319
          vacuolar transport 126
            Golgi to vacuole transport + 13
            endocytosed protein transport to vacuole 0
            late endosome to vacuole transport + 6
            lysosomal transport + 111
            negative regulation of vacuolar transport + 1
            plastid to vacuole vesicle-mediated transport 0
            positive regulation of vacuolar transport + 1
            protein targeting to vacuole + 32
            regulation of vacuolar transport + 3
            retrograde transport, vacuole to Golgi 0
Path 2
Term Annotations click to browse term
  biological_process 15015
    cellular process 13870
      cellular localization 3073
        establishment of localization in cell 1898
          intracellular transport 1319
            vacuolar transport 126
              Golgi to vacuole transport + 13
              endocytosed protein transport to vacuole 0
              late endosome to vacuole transport + 6
              lysosomal transport + 111
              negative regulation of vacuolar transport + 1
              plastid to vacuole vesicle-mediated transport 0
              positive regulation of vacuolar transport + 1
              protein targeting to vacuole + 32
              regulation of vacuolar transport + 3
              retrograde transport, vacuole to Golgi 0
paths to the root