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ONTOLOGY REPORT - ANNOTATIONS

Term:vacuolar transport
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Accession:GO:0007034 term browser browse the term
Definition:The directed movement of substances into, out of or within a vacuole.


show annotations for term's descendants           Sort by:
vacuolar transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6V0D1 ATPase H+ transporting V0 subunit d1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 6:28,090,180...28,132,080
Ensembl chr 6:28,090,183...28,131,985 		JBrowse link
G ATP6V0D2 ATPase H+ transporting V0 subunit d2 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 4:50,694,188...50,749,373
Ensembl chr 4:50,694,189...50,749,378 		JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,866...358,653 		JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:63,102,155...63,105,032
Ensembl chr 6:63,102,156...63,104,943 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr13:168,534,950...168,569,574
Ensembl chr13:168,533,694...168,569,688 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 3:58,206,921...58,279,252
Ensembl chr 3:58,206,921...58,279,248 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:75,089,092...75,093,796
Ensembl chr 7:75,089,423...75,097,761 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA InterPro GO_REF:0000002 NCBI chr17:37,285,422...37,334,103
Ensembl chr17:37,285,442...37,334,101 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:54,860,481...54,895,229
Ensembl chr 4:54,859,930...54,895,192 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr10:33,212,769...33,227,237
Ensembl chr10:33,211,516...33,227,302 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:1,691,821...1,698,347
Ensembl chr12:1,691,823...1,698,305 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr14:7,390,066...7,403,657
Ensembl chr14:7,390,061...7,403,654 		JBrowse link
G NDFIP1 Nedd4 family interacting protein 1 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 2:143,688,946...143,734,523
Ensembl chr 2:143,629,783...143,734,520 		JBrowse link
G NDFIP2 Nedd4 family interacting protein 2 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr11:51,493,981...51,560,305
Ensembl chr11:51,420,166...51,560,305 		JBrowse link
G NOXRED1 NADP dependent oxidoreductase domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:100,458,164...100,482,053
Ensembl chr 7:100,464,454...100,478,767 		JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:100,482,953...100,510,164
Ensembl chr 7:100,482,956...100,506,161 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA UniProt GO_REF:0000104 NCBI chr18:55,293,655...55,466,628
Ensembl chr18:55,301,624...55,466,628 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5921629|PMID:28675177) MGI
Ensembl		 PMID:28675177 GO_REF:0000107 MGI:5921629 NCBI chr 1:158,233,039...158,273,533
Ensembl chr 1:158,233,070...158,270,679 		JBrowse link
endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKTIP AKT interacting protein involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:31,706,253...31,757,878
Ensembl chr 6:31,747,606...31,758,279 		JBrowse link
G ATG14 autophagy related 14 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22797916) MGI
Ensembl		 PMID:22797916 GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,706 		JBrowse link
G BECN2 beclin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23954414) Ensembl
Ensembl
MGI		 PMID:23954414 GO_REF:0000107 NCBI chr10:15,388,712...15,390,250
Ensembl chr10:15,388,605...15,390,226 		JBrowse link
G BIN1 bridging integrator 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr15:25,328,679...25,379,675
Ensembl chr15:25,328,674...25,383,652 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4457791|PMID:20551175) Ensembl
Ensembl
MGI		 PMID:20551175 GO_REF:0000107 MGI:4457791 NCBI chr11:5,339,727...5,346,081
Ensembl chr11:5,339,716...5,346,057 		JBrowse link
G CHMP3 charged multivesicular body protein 3 ISO RGD PMID:18076377 RGD:4892661 NCBI chr 3:58,206,921...58,279,252
Ensembl chr 3:58,206,921...58,279,248 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3622513|PMID:16567502) Ensembl
Ensembl
MGI		 PMID:16567502 GO_REF:0000107 MGI:3622513 NCBI chr10:33,212,769...33,227,237
Ensembl chr10:33,211,516...33,227,302 		JBrowse link
G CLEC16A C-type lectin domain containing 16A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 3:31,938,133...32,158,343
Ensembl chr 3:31,938,135...32,158,320 		JBrowse link
G DENND3 DENN domain containing 3 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 4:2,530,640...2,578,104
Ensembl chr 4:2,530,649...2,578,098 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr13:137,950,266...137,961,381
Ensembl chr13:137,950,272...137,961,343 		JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:95,493,779...95,616,794
Ensembl chr 1:95,498,720...95,616,755 		JBrowse link
G FHIP1B FHF complex subunit HOOK interacting protein 1B involved_in IEA
IBA		 (PMID:21873635) Ensembl
GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 9:3,441,613...3,464,237
Ensembl chr 9:3,446,075...3,464,226 		JBrowse link
G GPRASP1 G protein-coupled receptor associated sorting protein 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr  X:83,765,210...83,810,090
Ensembl chr  X:83,765,303...83,810,085 		JBrowse link
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate ISO RGD PMID:19808888 RGD:4892648 NCBI chr12:1,207,036...1,219,750
Ensembl chr12:1,207,036...1,219,715 		JBrowse link
G HOOK1 hook microtubule tethering protein 1 involved_in ISO (PMID:18799622) UniProt PMID:18799622 NCBI chr 6:152,636,118...152,709,422 JBrowse link
G HOOK2 hook microtubule tethering protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:66,227,562...66,239,671
Ensembl chr 2:66,227,601...66,244,828 		JBrowse link
G HOOK3 hook microtubule tethering protein 3 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr17:11,817,963...11,919,152
Ensembl chr17:11,818,031...11,923,196 		JBrowse link
G KIF13A kinesin family member 13A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:13,498,354...13,716,844
Ensembl chr 7:13,498,222...13,716,757 		JBrowse link
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6510385|PMID:33357458) MGI
Ensembl		 PMID:33357458 GO_REF:0000107 MGI:6510385 NCBI chr14:101,131,372...101,254,739
Ensembl chr14:101,126,257...101,193,614 		JBrowse link
G MGRN1 mahogunin ring finger 1 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr 3:37,694,798...37,748,106
Ensembl chr 3:37,694,808...37,748,067 		JBrowse link
G MTM1 myotubularin 1 involved_in IEA InterPro
Ensembl
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr  X:122,286,904...122,379,302
Ensembl chr  X:122,286,916...122,379,299 		JBrowse link
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:39,786,201...39,797,578
Ensembl chr 6:39,786,199...39,797,583 		JBrowse link
G PLEKHF2 pleckstrin homology and FYVE domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:41,512,109...41,534,932
Ensembl chr 4:41,511,342...41,535,012 		JBrowse link
G RAB12 RAB12, member RAS oncogene family involved_in ISO (MGI:5448516|PMID:21718402) UniProt PMID:21718402 MGI:5448516 NCBI chr 6:99,216,225...99,244,627
Ensembl chr 6:99,216,228...99,244,868 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr13:71,777,422...71,886,758
Ensembl chr13:71,777,424...71,852,694 		JBrowse link
G RAB7B RAB7B, member RAS oncogene family involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 9:66,635,636...66,666,034
Ensembl chr 9:66,635,638...66,666,036 		JBrowse link
G RHOB ras homolog family member B involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 3:117,773,400...117,777,569
Ensembl chr 3:117,773,405...117,777,574 		JBrowse link
G RILP Rab interacting lysosomal protein involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr12:47,845,553...47,860,429
Ensembl chr12:47,856,934...47,860,391 		JBrowse link
G RNF157 ring finger protein 157 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:5,225,978...5,306,197
Ensembl chr12:5,225,849...5,304,458 		JBrowse link
G SCYL2 SCY1 like pseudokinase 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 5:83,813,207...83,878,766
Ensembl chr 5:83,813,206...83,878,760 		JBrowse link
G SNAPIN SNAP associated protein involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(PMID:22797916)		 GO_Central
GO_Central
Ensembl
MGI		 PMID:21873635 PMID:22797916 GO_REF:0000107 NCBI chr 4:95,987,524...95,989,527
Ensembl chr 4:95,984,358...95,989,474 		JBrowse link
G SNX16 sorting nexin 16 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 4:54,801,363...54,837,986
Ensembl chr 4:54,801,394...54,837,981 		JBrowse link
G SNX27 sorting nexin 27 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 4:97,533,643...97,620,816
Ensembl chr 4:97,525,181...97,620,788 		JBrowse link
G SORT1 sortilin 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 4:110,721,110...110,791,406
Ensembl chr 4:110,720,947...110,789,070 		JBrowse link
G STX7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chr 1:31,184,905...31,237,052
Ensembl chr 1:31,184,947...31,235,865 		JBrowse link
G STX8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chr12:54,296,988...54,544,668
Ensembl chr12:54,296,995...54,544,646 		JBrowse link
G TGFBRAP1 transforming growth factor beta receptor associated protein 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 3:49,469,898...49,521,879
Ensembl chr 3:49,466,903...49,521,875 		JBrowse link
G TRAK1 trafficking kinesin protein 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr13:25,773,345...25,934,770
Ensembl chr13:25,774,250...25,935,828 		JBrowse link
G TRAK2 trafficking kinesin protein 2 ISO RGD PMID:17062640 RGD:13208835 NCBI chr15:104,991,261...105,056,054
Ensembl chr15:104,991,726...105,055,025 		JBrowse link
G TSG101 tumor susceptibility 101 ISO RGD PMID:19808888 RGD:4892648 NCBI chr 2:40,673,187...40,720,681 JBrowse link
G UEVLD UEV and lactate/malate dehyrogenase domains involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,617,086...40,671,701
Ensembl chr 2:40,617,039...40,669,595 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in IBA
IEA
ISO		 (PMID:21873635) GO_Central
Ensembl
Ensembl
RGD		 PMID:15133481 PMID:21873635 GO_REF:0000107 RGD:4892614 NCBI chr  X:125,863,266...125,917,232
Ensembl chr  X:125,863,292...125,917,225 		JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO
IEA		 (PMID:25783203) UniProt
Ensembl
Ensembl		 PMID:25783203 GO_REF:0000107 NCBI chr 7:100,482,953...100,510,164
Ensembl chr 7:100,482,956...100,506,161 		JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chr 9:46,285,718...46,297,465
Ensembl chr 9:46,285,739...46,297,474 		JBrowse link
G VPS16 VPS16 core subunit of CORVET and HOPS complexes involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr17:32,803,596...32,825,974
Ensembl chr17:32,803,412...32,825,933 		JBrowse link
G VPS18 VPS18 core subunit of CORVET and HOPS complexes involved_in IBA
IEA		 (PMID:21873635) GO_Central
GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 1:130,409,121...130,420,467
Ensembl chr 1:130,409,123...130,420,450 		JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:30,469,003...30,496,626
Ensembl chr14:30,469,070...30,495,470 		JBrowse link
G VPS33B VPS33B late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chr 7:55,840,612...55,865,045
Ensembl chr 7:55,840,607...55,865,716 		JBrowse link
G VPS39 VPS39 subunit of HOPS complex involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:129,144,338...129,198,760
Ensembl chr 1:129,144,344...129,198,761 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:55,293,655...55,466,628
Ensembl chr18:55,301,624...55,466,628 		JBrowse link
endosome to lysosome transport of low-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:61,640,619...61,696,819
Ensembl chr13:61,640,671...61,698,374 		JBrowse link
G TPCN2 two pore segment channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:4,069,267...4,105,065
Ensembl chr 2:4,069,280...4,105,042 		JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LYST lysosomal trafficking regulator involved_in IEA
ISS		 Ensembl
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:55,433,163...55,634,011
Ensembl chr14:55,433,597...55,633,484 		JBrowse link
G MVB12A multivesicular body subunit 12A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 2:60,271,020...60,275,972
Ensembl chr 2:60,271,026...60,275,971 		JBrowse link
G UBXN6 UBX domain protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:74,357,522...74,378,600
Ensembl chr 2:74,357,517...74,378,592 		JBrowse link
G VCP valosin containing protein involved_in IEA
ISS		 Ensembl
UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,851,206...235,869,634 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:158,233,039...158,273,533
Ensembl chr 1:158,233,070...158,270,679 		JBrowse link
Golgi to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKFY1 ankyrin repeat and FYVE domain containing 1 involved_in IEA
IBA		 (PMID:21873635) Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr12:50,258,037...50,368,621
Ensembl chr12:50,266,696...50,348,689 		JBrowse link
G ANKFY1 ankyrin repeat and FYVE domain containing 1 involved_in IEA
IBA		 (PMID:21873635) Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr12:50,167,959...50,251,861
Ensembl chr12:50,168,049...50,251,768 		JBrowse link
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:14,719,949...14,809,821
Ensembl chr 6:14,719,959...14,809,491 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 3:8,013,701...8,017,701
Ensembl chr 3:8,013,747...8,017,700 		JBrowse link
G ASB15 ankyrin repeat and SOCS box containing 15 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:23,826,025...23,881,794
Ensembl chr18:23,825,970...23,859,250 		JBrowse link
G CCDC91 coiled-coil domain containing 91 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 5:45,138,162...45,525,661
Ensembl chr 5:45,138,057...45,525,650 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G EHD3 EH domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:108,103,631...108,135,161
Ensembl chr 3:108,100,401...108,134,906 		JBrowse link
G GAK cyclin G associated kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:240,818...296,989
Ensembl chr 8:240,822...296,956 		JBrowse link
G LAMP1 lysosomal associated membrane protein 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr11:78,600,818...78,617,587
Ensembl chr11:78,600,713...78,617,615 		JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISO (MGI:6478861|PMID:24638062) ARUK-UCL PMID:24638062 MGI:6478861 NCBI chr 6:87,363,911...87,390,371
Ensembl chr 6:87,363,912...87,390,288 		JBrowse link
G RBSN rabenosyn, RAB effector involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr13:69,403,995...69,434,829
Ensembl chr13:69,404,021...69,434,829 		JBrowse link
G SORT1 sortilin 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 4:110,721,110...110,791,406
Ensembl chr 4:110,720,947...110,789,070 		JBrowse link
Golgi to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:14,719,949...14,809,821
Ensembl chr 6:14,719,959...14,809,491 		JBrowse link
G AP1G2 adaptor related protein complex 1 subunit gamma 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:75,533,131...75,549,490
Ensembl chr 7:75,533,202...75,549,488 		JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 2:76,428,443...76,471,266
Ensembl chr 2:76,428,476...76,471,257 		JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 2:119,965,539...120,039,948
Ensembl chr 2:119,965,539...120,039,947 		JBrowse link
G AP3S2 adaptor-related protein complex 3, sigma 2 subunit involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 7:55,395,159...55,462,352
Ensembl chr 7:55,391,913...55,469,858 		JBrowse link
G VPS52 VPS52 subunit of GARP complex involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:29,624,224...29,639,168
Ensembl chr 7:29,624,230...29,639,140 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,429 		JBrowse link
G VTI1A vesicle transport through interaction with t-SNAREs 1A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:122,848,727...123,217,568
Ensembl chr14:122,849,004...123,215,938 		JBrowse link
G VTI1B vesicle transport through interaction with t-SNAREs 1B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:91,386,020...91,413,480
Ensembl chr 7:91,374,640...91,413,607 		JBrowse link
late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:61,640,619...61,696,819
Ensembl chr13:61,640,671...61,698,374 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:38,389,366...38,415,903
Ensembl chr10:38,389,331...38,415,901 		JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,866...358,653 		JBrowse link
G CHMP1B charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chr 6:97,356,924...97,359,613 JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:63,102,155...63,105,032
Ensembl chr 6:63,102,156...63,104,943 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr13:168,534,950...168,569,574
Ensembl chr13:168,533,694...168,569,688 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:58,206,921...58,279,252
Ensembl chr 3:58,206,921...58,279,248 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 7:75,089,092...75,093,796
Ensembl chr 7:75,089,423...75,097,761 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr17:37,285,422...37,334,103
Ensembl chr17:37,285,442...37,334,101 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:54,860,481...54,895,229
Ensembl chr 4:54,859,930...54,895,192 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr10:33,212,769...33,227,237
Ensembl chr10:33,211,516...33,227,302 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr12:1,691,821...1,698,347
Ensembl chr12:1,691,823...1,698,305 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr14:7,390,066...7,403,657
Ensembl chr14:7,390,061...7,403,654 		JBrowse link
G PLEKHM1 pleckstrin homology and RUN domain containing M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,984,169...18,035,377
Ensembl chr12:17,993,036...18,035,375 		JBrowse link
G SNAPIN SNAP associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4879078|PMID:20920792) Ensembl
Ensembl
MGI		 PMID:20920792 GO_REF:0000107 MGI:4879078 NCBI chr 4:95,987,524...95,989,527
Ensembl chr 4:95,984,358...95,989,474 		JBrowse link
G VPS39 VPS39 subunit of HOPS complex involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:129,144,338...129,198,760
Ensembl chr 1:129,144,344...129,198,761 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:55,293,655...55,466,628
Ensembl chr18:55,301,624...55,466,628 		JBrowse link
late endosome to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G BECN2 beclin 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr10:15,388,712...15,390,250
Ensembl chr10:15,388,605...15,390,226 		JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,866...358,653 		JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 6:63,102,155...63,105,032
Ensembl chr 6:63,102,156...63,104,943 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr13:168,534,950...168,569,574
Ensembl chr13:168,533,694...168,569,688 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 3:58,206,921...58,279,252
Ensembl chr 3:58,206,921...58,279,248 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr14:7,390,066...7,403,657
Ensembl chr14:7,390,061...7,403,654 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA
IBA		 (PMID:21873635) InterPro
GO_Central		 PMID:21873635 GO_REF:0000002 NCBI chr13:1,730,988...1,815,555
Ensembl chr13:1,731,023...1,815,556 		JBrowse link
late endosome to vacuole transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP4A charged multivesicular body protein 4A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:75,089,092...75,093,796
Ensembl chr 7:75,089,423...75,097,761 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr17:37,285,422...37,334,103
Ensembl chr17:37,285,442...37,334,101 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:54,860,481...54,895,229
Ensembl chr 4:54,859,930...54,895,192 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:33,212,769...33,227,237
Ensembl chr10:33,211,516...33,227,302 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr12:1,691,821...1,698,347
Ensembl chr12:1,691,823...1,698,305 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:7,390,066...7,403,657
Ensembl chr14:7,390,061...7,403,654 		JBrowse link
G LEPROT leptin receptor overlapping transcript involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 6:146,974,641...146,987,261
Ensembl chr 6:146,974,639...146,987,242 		JBrowse link
G LEPROTL1 leptin receptor overlapping transcript like 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr15:54,916,037...54,929,858
Ensembl chr15:54,916,038...54,929,762 		JBrowse link
G TMEM50A transmembrane protein 50A involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:82,861,618...82,879,061
Ensembl chr 6:82,861,650...82,878,951 		JBrowse link
G TMEM50B transmembrane protein 50B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr13:197,048,285...197,093,308
Ensembl chr13:197,046,682...197,093,241 		JBrowse link
G VTA1 vesicle trafficking 1 involved_in IBA
IEA		 (PMID:21873635) GO_Central
InterPro
GO_Central
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr 1:22,862,628...22,923,861
Ensembl chr 1:22,859,390...22,923,838 		JBrowse link
lysosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALS2 alsin Rho guanine nucleotide exchange factor ALS2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12837691) MGI
Ensembl		 PMID:12837691 GO_REF:0000107 NCBI chr15:105,328,717...105,401,152
Ensembl chr15:105,328,719...105,401,093 		JBrowse link
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:75,618,317...75,638,591
Ensembl chr 6:75,618,319...75,638,591 		JBrowse link
G GRN granulin precursor involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr12:18,893,772...18,900,444
Ensembl chr12:18,893,770...18,900,446 		JBrowse link
G HGSNAT heparan-alpha-glucosaminide N-acetyltransferase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:11,989,871...12,035,819 JBrowse link
G IGF2R insulin like growth factor 2 receptor involved_in IEA
IBA		 (PMID:21873635) InterPro
GO_Central
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr 1:7,369,485...7,472,480
Ensembl chr 1:7,368,103...7,472,548 		JBrowse link
G LOC100154844 heparan-alpha-glucosaminide N-acetyltransferase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:8,644,388...8,665,004 JBrowse link
G LRP1 LDL receptor related protein 1 involved_in ISO (MGI:5701557|PMID:26370502) UniProt PMID:26370502 MGI:5701557 NCBI chr 5:22,435,636...22,519,276 JBrowse link
G LYSET lysosomal enzyme trafficking factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:114,574,393...114,575,887
Ensembl chr 7:114,574,139...114,575,883 		JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:62,537,751...62,557,674
Ensembl chr 5:62,545,638...62,557,674 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:115,941,945...116,069,884
Ensembl chr 1:115,941,940...116,070,305 		JBrowse link
G NPC1 NPC intracellular cholesterol transporter 1 involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr 6:108,403,126...108,450,486
Ensembl chr 6:108,402,879...108,450,990 		JBrowse link
G PCSK9 proprotein convertase subtilisin/kexin type 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:157,388,370...157,409,620
Ensembl chr 6:157,388,372...157,409,551 		JBrowse link
G PSAP prosaposin involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:74,734,185...74,820,645
Ensembl chr14:74,734,189...74,887,763 		JBrowse link
G RAB34 RAB34, member RAS oncogene family involved_in ISO (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:5467668 NCBI chr12:44,951,989...44,956,458
Ensembl chr12:44,951,210...44,956,119 		JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23704327) MGI
Ensembl		 PMID:23704327 GO_REF:0000107 NCBI chr 1:129,461,598...129,514,380
Ensembl chr 1:129,462,568...129,511,568 		JBrowse link
G TMEM106B transmembrane protein 106B involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:21873635)
(MGI:5588048|PMID:25066864)		 GO_Central
GO_Central
MGI		 PMID:21873635 PMID:25066864 MGI:5588048 NCBI chr 9:81,837,654...81,864,215
Ensembl chr 9:81,837,667...81,864,210 		JBrowse link
G VPS51 VPS51 subunit of GARP complex involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(PMID:25799061)		 GO_Central
Ensembl
MGI		 PMID:21873635 PMID:25799061 GO_REF:0000107 NCBI chr 2:7,081,607...7,094,898
Ensembl chr 2:7,081,608...7,098,641 		JBrowse link
G VPS52 VPS52 subunit of GARP complex involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(PMID:25799061)		 GO_Central
Ensembl
GO_Central
MGI		 PMID:21873635 PMID:25799061 GO_REF:0000107 NCBI chr 7:29,624,224...29,639,168
Ensembl chr 7:29,624,230...29,639,140 		JBrowse link
G VPS53 VPS53 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chr12:47,141,749...47,291,169
Ensembl chr12:47,143,098...47,291,161 		JBrowse link
G VPS54 VPS54 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,429 		JBrowse link
mitochondrion to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:5,698,508...6,731,132
Ensembl chr 1:5,465,312...6,730,872 		JBrowse link
G VPS35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:37,944,099...37,977,091
Ensembl chr 6:37,944,127...37,986,171 		JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP3 charged multivesicular body protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:58,206,921...58,279,252
Ensembl chr 3:58,206,921...58,279,248 		JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNPTAB N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in IBA
IEA		 (PMID:21873635) GO_Central
GO_Central
Ensembl
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 5:82,264,640...82,460,819
Ensembl chr 5:82,361,872...82,460,814 		JBrowse link
negative regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:37,944,099...37,977,091
Ensembl chr 6:37,944,127...37,986,171 		JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 2:76,428,443...76,471,266
Ensembl chr 2:76,428,476...76,471,257 		JBrowse link
G CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr 5:11,067,016...11,185,480
Ensembl chr 5:11,067,692...11,185,480 		JBrowse link
G CACNG3 calcium voltage-gated channel auxiliary subunit gamma 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 3:21,855,847...21,961,191
Ensembl chr 3:21,855,855...21,961,187 		JBrowse link
G CACNG4 calcium voltage-gated channel auxiliary subunit gamma 4 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr12:13,391,080...13,454,542
Ensembl chr12:13,391,079...13,452,174 		JBrowse link
G CACNG5 calcium voltage-gated channel auxiliary subunit gamma 5 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr12:13,288,510...13,328,811
Ensembl chr12:13,288,544...13,328,017 		JBrowse link
G CACNG7 calcium voltage-gated channel auxiliary subunit gamma 7 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 6:56,188,362...56,211,655
Ensembl chr 6:56,188,168...56,212,505 		JBrowse link
G CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 Ensembl chr 6:56,156,205...56,175,002 JBrowse link
positive regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:21421027 RGD:9684860 NCBI chr 2:51,219,597...51,237,640
Ensembl chr 2:51,219,667...51,237,639 		JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2679144|PMID:14557411) Ensembl
Ensembl
MGI		 PMID:14557411 GO_REF:0000107 MGI:2679144 NCBI chr 2:86,875,922...87,142,722
Ensembl chr 2:86,873,290...87,142,768 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,013,701...8,017,701
Ensembl chr 3:8,013,747...8,017,700 		JBrowse link
G GCC2 GRIP and coiled-coil domain containing 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 3:47,718,251...47,759,060
Ensembl chr 3:47,718,254...47,758,999 		JBrowse link
G GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr12:6,051,854...6,072,424
Ensembl chr12:6,055,696...6,074,478 		JBrowse link
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr12:1,207,036...1,219,750
Ensembl chr12:1,207,036...1,219,715 		JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISO (MGI:3803048|PMID:18619870) ARUK-UCL PMID:18619870 MGI:3803048 NCBI chr 6:87,363,911...87,390,371
Ensembl chr 6:87,363,912...87,390,288 		JBrowse link
G LHCGR luteinizing hormone/choriogonadotropin receptor ISO chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chr 3:91,964,415...92,023,821
Ensembl chr 3:91,964,415...92,021,398 		JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent involved_in IEA
IBA		 (PMID:21873635) InterPro
GO_Central
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr 5:62,537,751...62,557,674
Ensembl chr 5:62,545,638...62,557,674 		JBrowse link
G NCOA4 nuclear receptor coactivator 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25327288) MGI
Ensembl
Ensembl		 PMID:25327288 GO_REF:0000107 NCBI chr14:90,505,614...90,531,302
Ensembl chr14:90,505,110...90,531,118 		JBrowse link
G NDP norrin cystine knot growth factor NDP acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5921629|PMID:28675177) MGI
Ensembl		 PMID:28675177 GO_REF:0000107 MGI:5921629 NCBI chr  X:39,208,115...39,235,879
Ensembl chr  X:39,208,119...39,235,758 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:115,941,945...116,069,884
Ensembl chr 1:115,941,940...116,070,305 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr13:71,777,422...71,886,758
Ensembl chr13:71,777,424...71,852,694 		JBrowse link
G SCARB2 scavenger receptor class B member 2 involved_in IEA
IBA		 (PMID:21873635) Ensembl
GO_Central
Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr 8:71,838,395...71,910,461
Ensembl chr 8:71,838,397...71,940,607 		JBrowse link
G SNX16 sorting nexin 16 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 4:54,801,363...54,837,986
Ensembl chr 4:54,801,394...54,837,981 		JBrowse link
G SORL1 sortilin related receptor 1 involved_in IEA
IBA		 (PMID:21873635) Ensembl
GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 9:48,435,350...48,653,670
Ensembl chr 9:48,435,345...48,653,655 		JBrowse link
G SORT1 sortilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4368056|PMID:19732768) Ensembl
Ensembl
MGI		 PMID:19732768 GO_REF:0000107 MGI:4368056 NCBI chr 4:110,721,110...110,791,406
Ensembl chr 4:110,720,947...110,789,070 		JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,657,792...17,669,560
Ensembl chr 6:17,654,638...17,669,841 		JBrowse link
G VPS53 VPS53 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,141,749...47,291,169
Ensembl chr12:47,143,098...47,291,161 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,429 		JBrowse link
G ZFYVE16 zinc finger FYVE-type containing 16 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr 2:89,044,860...89,109,237
Ensembl chr 2:89,045,362...89,106,975 		JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLU clusterin involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr14:11,336,585...11,352,569
Ensembl chr14:11,336,595...11,349,764 		JBrowse link
G HSPA6 heat shock protein family A (Hsp70) member 6 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:88,970,592...88,973,109
Ensembl chr 4:88,970,599...88,973,918 		JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 involved_in IBA
IEA		 (PMID:21873635) GO_Central
GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr 9:49,982,278...49,986,760
Ensembl chr 9:49,982,284...49,990,508 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:21873635)
PMID:18644871		 Ensembl
GO_Central
Ensembl
GO_Central
MGI		 PMID:18644871 PMID:21873635 GO_REF:0000107 RGD:10412301 NCBI chr  X:98,586,718...98,623,939
Ensembl chr  X:98,556,710...98,623,940 		JBrowse link
protein targeting to vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 2:76,428,443...76,471,266
Ensembl chr 2:76,428,476...76,471,257 		JBrowse link
G MON1A MON1 homolog A, secretory trafficking associated involved_in IEA UniProt
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr13:32,426,733...32,437,735
Ensembl chr13:32,426,736...32,437,862 		JBrowse link
G MON1B MON1 homolog B, secretory trafficking associated involved_in IEA UniProt
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 6:10,713,721...10,725,474
Ensembl chr 6:10,713,719...10,725,457 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:1,730,988...1,815,555
Ensembl chr13:1,731,023...1,815,556 		JBrowse link
G VPS13A vacuolar protein sorting 13 homolog A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 1:230,069,339...230,331,343
Ensembl chr 1:230,069,368...230,331,200 		JBrowse link
G VPS13C vacuolar protein sorting 13 homolog C involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 1:109,931,269...110,105,519
Ensembl chr 1:109,931,264...110,104,241 		JBrowse link
G VPS13D vacuolar protein sorting 13 homolog D involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 6:72,256,865...72,514,256
Ensembl chr 6:72,256,828...72,510,058 		JBrowse link
G VPS37A VPS37A subunit of ESCRT-I involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr17:4,949,632...5,014,842
Ensembl chr17:4,949,644...4,988,074 		JBrowse link
G VPS37B VPS37B subunit of ESCRT-I involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr14:29,963,087...29,994,650
Ensembl chr14:29,962,042...29,994,646 		JBrowse link
G VPS37C VPS37C subunit of ESCRT-I involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 2:10,614,198...10,643,545
Ensembl chr 2:10,632,927...10,643,539 		JBrowse link
G VPS37D VPS37D subunit of ESCRT-I involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 3:10,947,403...10,951,271
Ensembl chr 3:10,947,403...10,951,273 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IBA
IEA		 (PMID:21873635) GO_Central
InterPro
GO_Central
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr18:55,293,655...55,466,628
Ensembl chr18:55,301,624...55,466,628 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,429 		JBrowse link
G VPS8 VPS8 subunit of CORVET complex involved_in IEA
IBA		 (PMID:21873635) InterPro
GO_Central		 PMID:21873635 GO_REF:0000002 NCBI chr13:122,693,681...122,953,625
Ensembl chr13:122,693,760...122,950,420 		JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 3:6,037,732...6,142,569
Ensembl chr 3:6,037,741...6,142,575 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,752,768...78,763,998
Ensembl chr 2:78,752,771...78,763,938 		JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTPN23 protein tyrosine phosphatase non-receptor type 23 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:30,190,659...30,252,980
Ensembl chr13:30,190,755...30,253,113 		JBrowse link
G SNF8 SNF8 subunit of ESCRT-II involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr12:25,142,748...25,152,847
Ensembl chr12:25,142,813...25,153,016 		JBrowse link
G STAM signal transducing adaptor molecule involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr10:43,946,990...44,016,064
Ensembl chr10:43,947,011...44,016,056 		JBrowse link
G VPS25 vacuolar protein sorting 25 homolog involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr12:20,082,864...20,088,443
Ensembl chr12:20,082,865...20,088,566 		JBrowse link
G VPS28 VPS28 subunit of ESCRT-I involved_in IBA
IEA		 (PMID:21873635) GO_Central
GO_Central
UniProt		 PMID:21873635 GO_REF:0000104 NCBI chr 4:362,902...368,038
Ensembl chr 4:362,912...370,588 		JBrowse link
G VPS36 vacuolar protein sorting 36 homolog involved_in IEA
IBA		 (PMID:21873635) UniProt
UniProt
GO_Central
GO_Central		 PMID:21873635 GO_REF:0000104 NCBI chr11:15,701,370...15,735,469
Ensembl chr11:15,701,373...15,735,474 		JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VAMP7 vesicle associated membrane protein 7 acts_upstream_of_or_within ISO (MGI:3774712|PMID:18227281) MGI PMID:18227281 MGI:3774712 NCBI chr  X:125,863,266...125,917,232
Ensembl chr  X:125,863,292...125,917,225 		JBrowse link
zinc ion import into lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC30A2 solute carrier family 30 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:83,478,761...83,484,876
Ensembl chr 6:83,477,759...83,484,688 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17625
    localization 5375
      cellular localization 3438
        intracellular transport 1618
          vacuolar transport 162
            Golgi to vacuole transport + 21
            endocytosed protein transport to vacuole 0
            late endosome to vacuole transport + 24
            lysosomal transport + 127
            negative regulation of vacuolar transport + 1
            plastid to vacuole vesicle-mediated transport 0
            positive regulation of vacuolar transport + 1
            protein targeting to vacuole + 41
            regulation of vacuolar transport + 3
            retrograde transport, vacuole to Golgi 0
Path 2
Term Annotations click to browse term
  biological_process 17625
    cellular process 16406
      cellular localization 3438
        establishment of localization in cell 2212
          intracellular transport 1618
            vacuolar transport 162
              Golgi to vacuole transport + 21
              endocytosed protein transport to vacuole 0
              late endosome to vacuole transport + 24
              lysosomal transport + 127
              negative regulation of vacuolar transport + 1
              plastid to vacuole vesicle-mediated transport 0
              positive regulation of vacuolar transport + 1
              protein targeting to vacuole + 41
              regulation of vacuolar transport + 3
              retrograde transport, vacuole to Golgi 0
paths to the root