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ONTOLOGY REPORT - ANNOTATIONS

Term:vacuolar transport
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Accession:GO:0007034 term browser browse the term
Definition:The directed movement of substances into, out of or within a vacuole.


show annotations for term's descendants           Sort by:
vacuolar transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AL136295.1 novel protein involved_in IEA InterPro
InterPro		 GO_REF:0000002 Ensembl chr14:24,189,157...24,213,473 JBrowse link
G ATP6V0D1 ATPase H+ transporting V0 subunit d1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr16:67,438,019...67,481,157
Ensembl chr16:67,438,014...67,481,181 		JBrowse link
G ATP6V0D2 ATPase H+ transporting V0 subunit d2 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 8:86,098,910...86,154,225
Ensembl chr 8:85,987,323...86,154,225 		JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr16:89,644,435...89,657,708
Ensembl chr16:89,640,816...89,657,738 		JBrowse link
G CHMP1B charged multivesicular body protein 1B involved_in IEA InterPro GO_REF:0000002 NCBI chr18:11,851,413...11,854,444
Ensembl chr18:11,851,413...11,854,444 		JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr19:58,551,566...58,555,105
Ensembl chr19:58,551,452...58,555,105 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 3:87,227,309...87,255,556
Ensembl chr 3:87,227,271...87,255,556 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:86,503,430...86,563,443
Ensembl chr 2:86,503,430...86,563,479 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr14:24,209,615...24,213,488
Ensembl chr14:24,209,615...24,213,830 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA InterPro GO_REF:0000002 NCBI chr20:33,811,348...33,854,366
Ensembl chr20:33,811,348...33,854,366 		JBrowse link
G CHMP4BP1 charged multivesicular body protein 4B pseudogene 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:55,298,608...55,299,496
Ensembl chr14:55,298,644...55,299,231 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:81,732,448...81,759,515
Ensembl chr 8:81,732,448...81,759,515 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:33,265,049...33,282,070
Ensembl chr 9:33,264,879...33,282,070 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr17:80,991,841...81,000,133
Ensembl chr17:80,991,598...81,009,517 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:23,243,637...23,261,999
Ensembl chr 8:23,243,637...23,262,000 		JBrowse link
G NDFIP1 Nedd4 family interacting protein 1 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 5:142,108,779...142,154,440
Ensembl chr 5:142,108,779...142,154,440 		JBrowse link
G NDFIP2 Nedd4 family interacting protein 2 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr13:79,481,155...79,556,077
Ensembl chr13:79,481,155...79,556,077 		JBrowse link
G RNF103-CHMP3 RNF103-CHMP3 readthrough involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 2:86,503,430...86,721,122
Ensembl chr 2:86,505,668...86,721,122 		JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr14:77,426,675...77,457,601
Ensembl chr14:77,426,675...77,457,952 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA UniProt GO_REF:0000104 NCBI chr 7:38,722,974...38,909,191
Ensembl chr 7:38,722,974...38,932,394 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5921629|PMID:28675177) MGI
Ensembl		 PMID:28675177 GO_REF:0000107 MGI:5921629 NCBI chr18:63,389,190...63,422,476
Ensembl chr18:63,389,190...63,422,483 		JBrowse link
endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRB2 adrenoceptor beta 2 involved_in TAS (PMID:9507004) PINC
PINC		 PMID:9507004 NCBI chr 5:148,826,611...148,828,623
Ensembl chr 5:148,826,611...148,828,623 		JBrowse link
G AKTIP AKT interacting protein involved_in IMP (PMID:18799622) UniProt
UniProt		 PMID:18799622 NCBI chr16:53,491,040...53,504,412
Ensembl chr16:53,491,040...53,504,411 		JBrowse link
G ATG14 autophagy related 14 acts_upstream_of_or_within IGI (PMID:22797916) MGI
MGI		 PMID:22797916 NCBI chr14:55,366,391...55,411,830
Ensembl chr14:55,366,391...55,411,830 		JBrowse link
G BECN2 beclin 2 involved_in
acts_upstream_of_or_within		 IMP
IEA		 (PMID:23954414) UniProt
Ensembl
MGI
UniProt
MGI		 PMID:23954414 GO_REF:0000107 NCBI chr 1:241,957,767...241,959,062
Ensembl chr 1:241,957,767...241,959,062 		JBrowse link
G BIN1 bridging integrator 1 involved_in IMP (PMID:27179792) ARUK-UCL
ARUK-UCL		 PMID:27179792 NCBI chr 2:127,048,023...127,107,154
Ensembl chr 2:127,048,027...127,107,288 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4457791|PMID:20551175) Ensembl
Ensembl
MGI		 PMID:20551175 GO_REF:0000107 MGI:4457791 NCBI chr13:27,960,918...27,969,315
Ensembl chr13:27,960,918...27,969,315 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in ISO
IEA		 RGD
Ensembl		 PMID:18076377 GO_REF:0000107 RGD:4892661 NCBI chr 2:86,503,430...86,563,443
Ensembl chr 2:86,503,430...86,563,479 		JBrowse link
G CHMP5 charged multivesicular body protein 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3622513|PMID:16567502) MGI
Ensembl		 PMID:16567502 GO_REF:0000107 MGI:3622513 NCBI chr 9:33,265,049...33,282,070
Ensembl chr 9:33,264,879...33,282,070 		JBrowse link
G CLEC16A C-type lectin domain containing 16A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr16:10,944,564...11,182,186
Ensembl chr16:10,944,539...11,182,186 		JBrowse link
G DENND3 DENN domain containing 3 involved_in IEA
ISS		 Ensembl
Ensembl
UniProt
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:141,128,589...141,195,804
Ensembl chr 8:141,117,278...141,195,808 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IMP (PMID:24790097) UniProt
UniProt		 PMID:24790097 NCBI chr 3:122,564,338...122,575,203
Ensembl chr 3:122,564,338...122,575,203 		JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor involved_in IMP (PMID:29130391) UniProt
UniProt		 PMID:29130391 NCBI chr18:45,800,581...45,967,329
Ensembl chr18:45,800,581...45,967,329 		JBrowse link
G FHIP1B FHF complex subunit HOOK interacting protein 1B involved_in IMP
IBA		 (PMID:18799622)
(PMID:21873635)		 UniProt
UniProt
GO_Central
GO_Central		 PMID:18799622 PMID:21873635 NCBI chr11:6,211,345...6,234,636
Ensembl chr11:6,211,345...6,234,711 		JBrowse link
G GPRASP1 G protein-coupled receptor associated sorting protein 1 involved_in IMP (PMID:23954414) UniProt
UniProt		 PMID:23954414 NCBI chr  X:102,651,483...102,659,083
Ensembl chr  X:102,651,092...102,659,083 		JBrowse link
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate ISO RGD PMID:19808888 RGD:4892648 NCBI chr17:81,684,011...81,702,121
Ensembl chr17:81,683,326...81,703,138 		JBrowse link
G HMGXB4 HMG-box containing 4 involved_in NAS (PMID:10329004) UniProt
UniProt		 PMID:10329004 NCBI chr22:35,241,536...35,295,807
Ensembl chr22:35,257,452...35,295,807 		JBrowse link
G HOOK1 hook microtubule tethering protein 1 involved_in IMP (PMID:18799622) UniProt
UniProt		 PMID:18799622 NCBI chr 1:59,814,949...59,876,322
Ensembl chr 1:59,814,786...59,876,322 		JBrowse link
G HOOK2 hook microtubule tethering protein 2 involved_in IMP (PMID:18799622) UniProt
UniProt		 PMID:18799622 NCBI chr19:12,763,003...12,792,350
Ensembl chr19:12,763,003...12,872,740 		JBrowse link
G HOOK3 hook microtubule tethering protein 3 involved_in IMP (PMID:18799622) UniProt
UniProt		 PMID:18799622 NCBI chr 8:42,896,978...43,030,535
Ensembl chr 8:42,896,946...43,030,535 		JBrowse link
G KIF13A kinesin family member 13A involved_in IMP (PMID:19841138) UniProt
UniProt		 PMID:19841138 NCBI chr 6:17,759,126...17,987,635
Ensembl chr 6:17,759,183...17,987,635 		JBrowse link
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6510385|PMID:33357458) MGI
Ensembl		 PMID:33357458 GO_REF:0000107 MGI:6510385 NCBI chr10:89,213,572...89,251,775
Ensembl chr10:89,213,569...89,414,557 		JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent involved_in TAS (PMID:10799489) PINC
PINC		 PMID:10799489 NCBI chr12:8,940,361...8,949,645
Ensembl chr12:8,940,361...8,949,761 		JBrowse link
G MGRN1 mahogunin ring finger 1 involved_in IBA
IMP		 (PMID:21873635)
(PMID:17229889)		 GO_Central
UniProt
GO_Central
UniProt		 PMID:17229889 PMID:21873635 NCBI chr16:4,624,826...4,690,972
Ensembl chr16:4,616,493...4,690,974 		JBrowse link
G MTM1 myotubularin 1 involved_in IDA
IEA		 (PMID:14722070) UniProt
UniProt
InterPro		 PMID:14722070 GO_REF:0000002 NCBI chr  X:150,562,653...150,673,143
Ensembl chr  X:150,568,417...150,673,143 		JBrowse link
G PCDHGA3 protocadherin gamma subfamily A, 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5317350|PMID:21917590) Ensembl
Ensembl
MGI		 PMID:21917590 GO_REF:0000107 MGI:5317350 NCBI chr 5:141,343,829...141,512,975
Ensembl chr 5:141,343,829...141,512,975 		JBrowse link
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:29,665,461...29,675,477
Ensembl chr19:29,665,459...29,675,477 		JBrowse link
G PLEKHF2 pleckstrin homology and FYVE domain containing 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:95,133,785...95,156,685
Ensembl chr 8:95,115,642...95,156,698 		JBrowse link
G PXK PX domain containing serine/threonine kinase like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:58,332,892...58,426,127
Ensembl chr 3:58,332,880...58,426,127 		JBrowse link
G RAB12 RAB12, member RAS oncogene family involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr18:8,609,437...8,639,383
Ensembl chr18:8,609,437...8,639,383 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IMP
IBA		 (PMID:18272684)
(PMID:21873635)		 BHF-UCL
GO_Central
BHF-UCL
GO_Central		 PMID:18272684 PMID:21873635 NCBI chr 3:128,726,183...128,814,798
Ensembl chr 3:128,693,669...128,825,942 		JBrowse link
G RAB7B RAB7B, member RAS oncogene family involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 1:205,976,740...206,003,395
Ensembl chr 1:205,976,740...206,003,461 		JBrowse link
G RHOB ras homolog family member B involved_in IDA (PMID:10508588) UniProt
UniProt		 PMID:10508588 NCBI chr 2:20,447,074...20,449,440
Ensembl chr 2:20,447,074...20,449,440 		JBrowse link
G RILP Rab interacting lysosomal protein involved_in IMP (PMID:18272684) BHF-UCL
BHF-UCL		 PMID:18272684 NCBI chr17:1,646,150...1,649,866
Ensembl chr17:1,646,145...1,649,866 		JBrowse link
G RNF103-CHMP3 RNF103-CHMP3 readthrough involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:86,503,430...86,721,122
Ensembl chr 2:86,505,668...86,721,122 		JBrowse link
G RNF157 ring finger protein 157 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:76,142,474...76,240,493
Ensembl chr17:76,142,465...76,240,493 		JBrowse link
G SCYL2 SCY1 like pseudokinase 2 involved_in IDA (PMID:19643732) BHF-UCL
BHF-UCL		 PMID:19643732 NCBI chr12:100,267,177...100,341,715
Ensembl chr12:100,267,140...100,341,715 		JBrowse link
G SNAPIN SNAP associated protein involved_in
acts_upstream_of_or_within		 IBA
IGI		 (PMID:21873635)
(PMID:22797916)		 GO_Central
MGI
GO_Central
MGI		 PMID:21873635 PMID:22797916 NCBI chr 1:153,658,654...153,661,852
Ensembl chr 1:153,658,703...153,661,852 		JBrowse link
G SNX16 sorting nexin 16 involved_in IMP
IBA		 (PMID:12813048)
(PMID:21873635)		 UniProt
GO_Central
UniProt
GO_Central		 PMID:12813048 PMID:21873635 NCBI chr 8:81,799,583...81,842,185
Ensembl chr 8:81,799,581...81,842,866 		JBrowse link
G SNX27 sorting nexin 27 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:151,612,050...151,699,080
Ensembl chr 1:151,612,006...151,699,091 		JBrowse link
G SORT1 sortilin 1 involved_in IDA (PMID:11331584) BHF-UCL
BHF-UCL		 PMID:11331584 NCBI chr 1:109,309,575...109,397,918
Ensembl chr 1:109,309,568...109,397,918 		JBrowse link
G STX7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chr 6:132,445,867...132,513,472
Ensembl chr 6:132,445,867...132,513,198 		JBrowse link
G STX8 syntaxin 8 involved_in IEA
ISO		 Ensembl
Ensembl
RGD		 PMID:15133481 GO_REF:0000107 RGD:4892614 NCBI chr17:9,250,471...9,575,820
Ensembl chr17:9,250,471...9,576,591 		JBrowse link
G TGFBRAP1 transforming growth factor beta receptor associated protein 1 involved_in IMP (PMID:25266290) UniProt
UniProt		 PMID:25266290 NCBI chr 2:105,249,404...105,329,735
Ensembl chr 2:105,264,391...105,329,735 		JBrowse link
G TRAK1 trafficking kinesin protein 1 involved_in IDA
IBA		 (PMID:18675823)
(PMID:21873635)		 UniProt
UniProt
GO_Central
GO_Central		 PMID:18675823 PMID:21873635 NCBI chr 3:42,013,093...42,225,890
Ensembl chr 3:42,013,802...42,225,890 		JBrowse link
G TRAK2 trafficking kinesin protein 2 ISO RGD PMID:17062640 RGD:13208835 NCBI chr 2:201,377,207...201,451,458
Ensembl chr 2:201,377,207...201,451,500 		JBrowse link
G TSG101 tumor susceptibility 101 involved_in IEA
IBA
ISO		 (PMID:21873635) Ensembl
GO_Central
Ensembl
RGD		 PMID:19808888 PMID:21873635 GO_REF:0000107 RGD:4892648 NCBI chr11:18,480,311...18,526,942
Ensembl chr11:18,468,336...18,526,951 		JBrowse link
G UEVLD UEV and lactate/malate dehyrogenase domains involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:18,529,609...18,588,734
Ensembl chr11:18,529,609...18,588,747 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in IBA
IDA
ISO		 (PMID:21873635)
(PMID:10888671)		 GO_Central
UniProt
RGD
UniProt		 PMID:10888671 PMID:15133481 PMID:21873635 RGD:4892614 NCBI chr  X:155,881,345...155,943,769
NCBI chr  Y:57,067,865...57,130,289
Ensembl chr  X:155,881,345...155,943,769 		JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in
NOT|involved_in		 IMP (PMID:19109425)
(PMID:25783203)		 UniProt
UniProt		 PMID:19109425 PMID:25783203 NCBI chr14:77,426,675...77,457,601
Ensembl chr14:77,426,675...77,457,952 		JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes involved_in IMP (PMID:25783203) UniProt
UniProt		 PMID:25783203 NCBI chr11:119,067,818...119,081,972
Ensembl chr11:119,067,818...119,081,972 		JBrowse link
G VPS16 VPS16 core subunit of CORVET and HOPS complexes involved_in IMP (PMID:25783203) UniProt
UniProt		 PMID:25783203 NCBI chr20:2,840,745...2,866,732
Ensembl chr20:2,840,703...2,866,732 		JBrowse link
G VPS18 VPS18 core subunit of CORVET and HOPS complexes involved_in IMP
IBA		 (PMID:25783203)
(PMID:21873635)		 UniProt
GO_Central
UniProt
GO_Central		 PMID:21873635 PMID:25783203 NCBI chr15:40,894,450...40,903,975
Ensembl chr15:40,894,450...40,903,975 		JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes involved_in IMP (PMID:25783203) UniProt
UniProt		 PMID:25783203 NCBI chr12:122,229,564...122,266,494
Ensembl chr12:122,229,564...122,266,494 		JBrowse link
G VPS33B VPS33B late endosome and lysosome associated NOT|involved_in IMP (PMID:25783203) UniProt
UniProt		 PMID:25783203 NCBI chr15:90,998,416...91,022,621
Ensembl chr15:90,998,673...91,022,603 		JBrowse link
G VPS39 VPS39 subunit of HOPS complex involved_in IMP (PMID:25266290), (PMID:25783203) UniProt
UniProt		 PMID:25266290 PMID:25783203 NCBI chr15:42,158,701...42,208,304
Ensembl chr15:42,158,701...42,208,307 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IMP (PMID:25783203) UniProt
UniProt		 PMID:25783203 NCBI chr 7:38,722,974...38,909,191
Ensembl chr 7:38,722,974...38,932,394 		JBrowse link
endosome to lysosome transport of low-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in IMP (PMID:21802320) UniProt
UniProt		 PMID:21802320 NCBI chr 3:5,122,292...5,180,911
Ensembl chr 3:5,122,249...5,180,911 		JBrowse link
G TPCN2 two pore segment channel 2 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:69,048,932...69,090,597
Ensembl chr11:69,048,932...69,136,316 		JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LYST lysosomal trafficking regulator involved_in IMP (PMID:9606205) UniProt
UniProt		 PMID:9606205 NCBI chr 1:235,661,031...235,883,713
Ensembl chr 1:235,661,041...235,883,724 		JBrowse link
G MVB12A multivesicular body subunit 12A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr19:17,405,741...17,425,332
Ensembl chr19:17,405,722...17,433,724 		JBrowse link
G UBXN6 UBX domain protein 6 involved_in IMP (PMID:21822278) UniProt
UniProt		 PMID:21822278 NCBI chr19:4,445,006...4,457,879
Ensembl chr19:4,444,999...4,457,794 		JBrowse link
G VCP valosin containing protein involved_in IMP (PMID:21822278) UniProt
UniProt		 PMID:21822278 NCBI chr 9:35,056,064...35,072,625
Ensembl chr 9:35,053,928...35,072,668 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B involved_in IMP (PMID:15024011) UniProt
UniProt		 PMID:15024011 NCBI chr18:63,389,190...63,422,476
Ensembl chr18:63,389,190...63,422,483 		JBrowse link
Golgi to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKFY1 ankyrin repeat and FYVE domain containing 1 involved_in IMP
IBA		 (PMID:22284051)
(PMID:21873635)		 UniProt
GO_Central
UniProt		 PMID:21873635 PMID:22284051 NCBI chr17:4,163,821...4,263,979
Ensembl chr17:4,163,821...4,263,995 		JBrowse link
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in IMP (PMID:23632890) UniProt
UniProt		 PMID:23632890 NCBI chr16:71,729,000...71,808,834
Ensembl chr16:71,729,000...71,809,201 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IDA
IBA		 (PMID:11139587)
(PMID:21873635)		 UniProt
GO_Central
UniProt
GO_Central		 PMID:11139587 PMID:21873635 NCBI chr 7:100,100,794...100,109,039
Ensembl chr 7:100,101,549...100,110,345 		JBrowse link
G ASB15 ankyrin repeat and SOCS box containing 15 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:123,567,008...123,639,481
Ensembl chr 7:123,567,010...123,639,481 		JBrowse link
G CCDC91 coiled-coil domain containing 91 involved_in IBA
IMP		 (PMID:21873635)
(PMID:17596511)		 GO_Central
GO_Central
UniProt
UniProt		 PMID:17596511 PMID:21873635 NCBI chr12:28,190,456...28,550,166
Ensembl chr12:28,133,249...28,581,511 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IMP (PMID:18817525) UniProt
UniProt		 PMID:18817525 NCBI chr16:28,466,653...28,492,082
Ensembl chr16:28,474,111...28,495,575 		JBrowse link
G EHD3 EH domain containing 3 involved_in IMP (PMID:19139087) UniProt
UniProt		 PMID:19139087 NCBI chr 2:31,234,152...31,269,451
Ensembl chr 2:31,234,152...31,269,451 		JBrowse link
G GAK cyclin G associated kinase involved_in IMP (PMID:16155256) ParkinsonsUK-UCL
ParkinsonsUK-UCL		 PMID:16155256 NCBI chr 4:849,277...932,316
Ensembl chr 4:849,276...932,373 		JBrowse link
G LAMP1 lysosomal associated membrane protein 1 involved_in IMP (PMID:23632890) UniProt
UniProt		 PMID:23632890 NCBI chr13:113,297,239...113,323,672
Ensembl chr13:113,297,239...113,323,672 		JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISS (PMID:8661146) ARUK-UCL
ARUK-UCL		 PMID:8661146 NCBI chr 1:30,732,469...30,757,774
Ensembl chr 1:30,732,469...30,757,774 		JBrowse link
G RBSN rabenosyn, RAB effector involved_in IMP (PMID:19139087) UniProt
UniProt		 PMID:19139087 NCBI chr 3:15,070,073...15,099,148
Ensembl chr 3:15,070,073...15,099,163 		JBrowse link
G SORT1 sortilin 1 involved_in IDA (PMID:16787399) UniProt
UniProt		 PMID:16787399 NCBI chr 1:109,309,575...109,397,918
Ensembl chr 1:109,309,568...109,397,918 		JBrowse link
Golgi to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr16:71,729,000...71,808,834
Ensembl chr16:71,729,000...71,809,201 		JBrowse link
G AP1G2 adaptor related protein complex 1 subunit gamma 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr14:23,559,567...23,567,791
Ensembl chr14:23,559,565...23,568,070 		JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr19:2,100,988...2,164,616
Ensembl chr19:2,100,988...2,164,468 		JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr 5:115,841,935...115,914,081
Ensembl chr 5:115,841,592...115,914,081 		JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr15:89,830,599...89,893,994
Ensembl chr15:89,830,599...89,894,638 		JBrowse link
G ARPIN-AP3S2 ARPIN-AP3S2 readthrough involved_in IEA InterPro
InterPro		 GO_REF:0000002 NCBI chr15:89,830,599...89,912,952
Ensembl chr15:89,834,308...89,912,882 		JBrowse link
G RNF215 ring finger protein 215 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:30,378,821...30,387,411
Ensembl chr22:30,368,811...30,421,771 		JBrowse link
G VPS52 VPS52 subunit of GARP complex involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 6:33,250,272...33,271,965
Ensembl chr 6:33,250,272...33,272,047 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 2:63,892,150...64,019,428
Ensembl chr 2:63,892,146...64,019,428 		JBrowse link
G VTI1A vesicle transport through interaction with t-SNAREs 1A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr10:112,446,988...112,855,368
Ensembl chr10:112,446,998...112,818,744 		JBrowse link
G VTI1B vesicle transport through interaction with t-SNAREs 1B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr14:67,647,085...67,674,632
Ensembl chr14:67,647,085...67,674,820 		JBrowse link
late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AL136295.1 novel protein involved_in IEA UniProt GO_REF:0000117 Ensembl chr14:24,189,157...24,213,473 JBrowse link
G ARL8B ADP ribosylation factor like GTPase 8B involved_in IMP
IEA
ISS		 (PMID:28325809) UniProt
UniProt
Ensembl		 PMID:28325809 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:5,122,292...5,180,911
Ensembl chr 3:5,122,249...5,180,911 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:27,546,546...27,573,866
Ensembl chr 9:27,535,640...27,573,866 		JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
ComplexPortal
UniProt		 PMID:17984323 GO_REF:0000117 NCBI chr16:89,644,435...89,657,708
Ensembl chr16:89,640,816...89,657,738 		JBrowse link
G CHMP1B charged multivesicular body protein 1B involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
UniProt
ComplexPortal		 PMID:17984323 GO_REF:0000117 NCBI chr18:11,851,413...11,854,444
Ensembl chr18:11,851,413...11,854,444 		JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
UniProt
ComplexPortal		 PMID:17984323 GO_REF:0000117 NCBI chr19:58,551,566...58,555,105
Ensembl chr19:58,551,452...58,555,105 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
UniProt
ComplexPortal		 PMID:17984323 GO_REF:0000117 NCBI chr 3:87,227,309...87,255,556
Ensembl chr 3:87,227,271...87,255,556 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
UniProt
ComplexPortal		 PMID:17984323 GO_REF:0000117 NCBI chr 2:86,503,430...86,563,443
Ensembl chr 2:86,503,430...86,563,479 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
ComplexPortal
UniProt		 PMID:17984323 GO_REF:0000117 NCBI chr14:24,209,615...24,213,488
Ensembl chr14:24,209,615...24,213,830 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
ComplexPortal
UniProt		 PMID:17984323 GO_REF:0000117 NCBI chr20:33,811,348...33,854,366
Ensembl chr20:33,811,348...33,854,366 		JBrowse link
G CHMP4BP1 charged multivesicular body protein 4B pseudogene 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr14:55,298,608...55,299,496
Ensembl chr14:55,298,644...55,299,231 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
UniProt
ComplexPortal		 PMID:17984323 GO_REF:0000117 NCBI chr 8:81,732,448...81,759,515
Ensembl chr 8:81,732,448...81,759,515 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
ComplexPortal
UniProt		 PMID:17984323 GO_REF:0000117 NCBI chr 9:33,265,049...33,282,070
Ensembl chr 9:33,264,879...33,282,070 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
UniProt
ComplexPortal		 PMID:17984323 GO_REF:0000117 NCBI chr17:80,991,841...81,000,133
Ensembl chr17:80,991,598...81,009,517 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
UniProt
ComplexPortal		 PMID:17984323 GO_REF:0000117 NCBI chr 8:23,243,637...23,261,999
Ensembl chr 8:23,243,637...23,262,000 		JBrowse link
G PLEKHM1 pleckstrin homology and RUN domain containing M1 involved_in IMP (PMID:28325809) UniProt
UniProt		 PMID:28325809 NCBI chr17:45,434,209...45,490,721
Ensembl chr17:45,435,900...45,490,758 		JBrowse link
G RNF103-CHMP3 RNF103-CHMP3 readthrough involved_in IMP
IEA		 (PMID:17984323) ComplexPortal
UniProt
ComplexPortal		 PMID:17984323 GO_REF:0000117 NCBI chr 2:86,503,430...86,721,122
Ensembl chr 2:86,505,668...86,721,122 		JBrowse link
G SNAPIN SNAP associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4879078|PMID:20920792) Ensembl
Ensembl
MGI		 PMID:20920792 GO_REF:0000107 MGI:4879078 NCBI chr 1:153,658,654...153,661,852
Ensembl chr 1:153,658,703...153,661,852 		JBrowse link
G VPS39 VPS39 subunit of HOPS complex involved_in IDA (PMID:23167963) UniProt
UniProt		 PMID:23167963 NCBI chr15:42,158,701...42,208,304
Ensembl chr15:42,158,701...42,208,307 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IMP (PMID:23167963) UniProt
UniProt		 PMID:23167963 NCBI chr 7:38,722,974...38,909,191
Ensembl chr 7:38,722,974...38,932,394 		JBrowse link
late endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS4A vacuolar protein sorting 4 homolog A involved_in NAS (PMID:9211789) ComplexPortal PMID:9211789 NCBI chr16:69,311,350...69,326,939
Ensembl chr16:69,311,350...69,326,939 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B involved_in NAS (PMID:9211789) ComplexPortal PMID:9211789 NCBI chr18:63,389,190...63,422,476
Ensembl chr18:63,389,190...63,422,483 		JBrowse link
late endosome to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G BECN2 beclin 2 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 1:241,957,767...241,959,062
Ensembl chr 1:241,957,767...241,959,062 		JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr16:89,644,435...89,657,708
Ensembl chr16:89,640,816...89,657,738 		JBrowse link
G CHMP1B charged multivesicular body protein 1B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr18:11,851,413...11,854,444
Ensembl chr18:11,851,413...11,854,444 		JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr19:58,551,566...58,555,105
Ensembl chr19:58,551,452...58,555,105 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 3:87,227,309...87,255,556
Ensembl chr 3:87,227,271...87,255,556 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 2:86,503,430...86,563,443
Ensembl chr 2:86,503,430...86,563,479 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IMP (PMID:16856878) UniProt
UniProt		 PMID:16856878 NCBI chr 8:23,243,637...23,261,999
Ensembl chr 8:23,243,637...23,262,000 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IBA
IEA		 (PMID:21873635) GO_Central
InterPro
GO_Central		 PMID:21873635 GO_REF:0000002 NCBI chr 3:130,678,934...130,746,829
Ensembl chr 3:130,678,934...130,746,829 		JBrowse link
G RNF103-CHMP3 RNF103-CHMP3 readthrough involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 2:86,503,430...86,721,122
Ensembl chr 2:86,505,668...86,721,122 		JBrowse link
late endosome to vacuole transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP4A charged multivesicular body protein 4A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr14:24,209,615...24,213,488
Ensembl chr14:24,209,615...24,213,830 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr20:33,811,348...33,854,366
Ensembl chr20:33,811,348...33,854,366 		JBrowse link
G CHMP4BP1 charged multivesicular body protein 4B pseudogene 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr14:55,298,608...55,299,496
Ensembl chr14:55,298,644...55,299,231 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 8:81,732,448...81,759,515
Ensembl chr 8:81,732,448...81,759,515 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 9:33,265,049...33,282,070
Ensembl chr 9:33,264,879...33,282,070 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr17:80,991,841...81,000,133
Ensembl chr17:80,991,598...81,009,517 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 8:23,243,637...23,261,999
Ensembl chr 8:23,243,637...23,262,000 		JBrowse link
G LEPROT leptin receptor overlapping transcript involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 1:65,420,668...65,436,007
Ensembl chr 1:65,420,587...65,436,007 		JBrowse link
G LEPROTL1 leptin receptor overlapping transcript like 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 8:30,095,408...30,138,348
Ensembl chr 8:30,095,408...30,177,208 		JBrowse link
G TMEM50A transmembrane protein 50A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 1:25,338,334...25,362,361
Ensembl chr 1:25,338,317...25,362,361 		JBrowse link
G TMEM50B transmembrane protein 50B involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr21:33,432,486...33,479,974
Ensembl chr21:33,432,485...33,479,974 		JBrowse link
G VTA1 vesicle trafficking 1 involved_in IBA
IEA		 (PMID:21873635) GO_Central
InterPro
GO_Central
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr 6:142,147,263...142,224,685
Ensembl chr 6:142,147,162...142,224,685 		JBrowse link
lysosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALS2 alsin Rho guanine nucleotide exchange factor ALS2 acts_upstream_of_or_within IDA (PMID:12837691) MGI
MGI		 PMID:12837691 NCBI chr 2:201,700,267...201,780,933
Ensembl chr 2:201,700,267...201,782,112 		JBrowse link
G ARSB arylsulfatase B involved_in TAS (PMID:2303452) PINC
PINC		 PMID:2303452 NCBI chr 5:78,777,209...78,985,958
Ensembl chr 5:78,777,209...78,986,087 		JBrowse link
G ATP13A2 ATPase cation transporting 13A2 involved_in IMP (PMID:31996848) UniProt
UniProt		 PMID:31996848 NCBI chr 1:16,985,958...17,011,928
Ensembl chr 1:16,985,958...17,011,928 		JBrowse link
G GRN granulin precursor involved_in IMP
ISS		 (PMID:28541286) UniProt
UniProt		 PMID:28541286 GO_REF:0000024 NCBI chr17:44,345,302...44,353,106
Ensembl chr17:44,345,246...44,353,106 		JBrowse link
G HGSNAT heparan-alpha-glucosaminide N-acetyltransferase involved_in IBA
IDA		 (PMID:21873635)
(PMID:20650889)		 GO_Central
UniProt
GO_Central
UniProt		 PMID:20650889 PMID:21873635 NCBI chr 8:43,140,464...43,202,855
Ensembl chr 8:43,140,464...43,202,855 		JBrowse link
G HSPA1A heat shock protein family A (Hsp70) member 1A involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr 6:31,815,543...31,817,942
Ensembl chr 6:31,815,543...31,817,946 		JBrowse link
G HSPA1B heat shock protein family A (Hsp70) member 1B involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr 6:31,827,738...31,830,254
Ensembl chr 6:31,827,738...31,830,254 		JBrowse link
G IGF2R insulin like growth factor 2 receptor involved_in IEA
IBA		 (PMID:21873635) InterPro
GO_Central
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr 6:159,969,082...160,111,504
Ensembl chr 6:159,969,082...160,113,507 		JBrowse link
G LRP1 LDL receptor related protein 1 involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr12:57,128,483...57,213,361
Ensembl chr12:57,128,483...57,213,361 		JBrowse link
G LYSET lysosomal enzyme trafficking factor involved_in IMP (PMID:36074821), (PMID:36074822) UniProt PMID:36074821 PMID:36074822 NCBI chr14:93,184,974...93,188,463
Ensembl chr14:93,184,951...93,188,463 		JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:8,940,361...8,949,645
Ensembl chr12:8,940,361...8,949,761 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in IDA (PMID:18544533) UniProt
UniProt		 PMID:18544533 NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,660 		JBrowse link
G NPC1 NPC intracellular cholesterol transporter 1 involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr18:23,506,184...23,586,506
Ensembl chr18:23,506,184...23,586,506 		JBrowse link
G PCSK9 proprotein convertase subtilisin/kexin type 9 involved_in IDA (PMID:17452316) BHF-UCL
BHF-UCL		 PMID:17452316 NCBI chr 1:55,039,548...55,064,852
Ensembl chr 1:55,039,447...55,064,852 		JBrowse link
G PSAP prosaposin involved_in IDA
IMP		 (PMID:26370502)
(PMID:28541286), (PMID:28835281)		 UniProt
UniProt		 PMID:26370502 PMID:28541286 PMID:28835281 NCBI chr10:71,816,298...71,851,251
Ensembl chr10:71,816,298...71,851,251 		JBrowse link
G RAB34 RAB34, member RAS oncogene family involved_in ISO (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:5467668 NCBI chr17:28,714,281...28,718,428
Ensembl chr17:28,714,281...28,718,429 		JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 acts_upstream_of_or_within IMP (PMID:23704327) MGI
MGI		 PMID:23704327 NCBI chr15:41,848,146...41,894,053
Ensembl chr15:41,848,146...41,894,053 		JBrowse link
G TMEM106B transmembrane protein 106B involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:5588048|PMID:25066864)		 GO_Central
GO_Central
Ensembl
MGI		 PMID:21873635 PMID:25066864 GO_REF:0000107 MGI:5588048 NCBI chr 7:12,211,294...12,243,367
Ensembl chr 7:12,211,270...12,243,367 		JBrowse link
G USE1 unconventional SNARE in the ER 1 involved_in ISS (PMID:16354670) HGNC-UCL
HGNC-UCL		 PMID:16354670 NCBI chr19:17,215,357...17,219,829
Ensembl chr19:17,215,346...17,219,829 		JBrowse link
G VPS51 VPS51 subunit of GARP complex involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:21873635)
(PMID:25799061)		 GO_Central
MGI
GO_Central
MGI		 PMID:21873635 PMID:25799061 NCBI chr11:65,096,214...65,111,862
Ensembl chr11:65,089,324...65,111,862 		JBrowse link
G VPS52 VPS52 subunit of GARP complex involved_in
acts_upstream_of_or_within		 IBA
IDA		 (PMID:21873635)
(PMID:25799061)		 GO_Central
MGI
GO_Central
MGI		 PMID:21873635 PMID:25799061 NCBI chr 6:33,250,272...33,271,965
Ensembl chr 6:33,250,272...33,272,047 		JBrowse link
G VPS53 VPS53 subunit of GARP complex acts_upstream_of_or_within IMP (PMID:25799061) MGI
MGI		 PMID:25799061 NCBI chr17:508,668...714,839
Ensembl chr17:508,503...721,717 		JBrowse link
G VPS54 VPS54 subunit of GARP complex acts_upstream_of_or_within IMP (PMID:25799061) MGI
MGI		 PMID:25799061 NCBI chr 2:63,892,150...64,019,428
Ensembl chr 2:63,892,146...64,019,428 		JBrowse link
mitochondrion to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:24446486) ParkinsonsUK-UCL
ParkinsonsUK-UCL		 PMID:24446486 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IDA (PMID:24446486) ParkinsonsUK-UCL
ParkinsonsUK-UCL		 PMID:24446486 NCBI chr 6:161,347,417...162,727,766
Ensembl chr 6:161,347,417...162,727,775 		JBrowse link
G VPS35 VPS35 retromer complex component involved_in IMP (PMID:26618722) ParkinsonsUK-UCL
ParkinsonsUK-UCL		 PMID:26618722 NCBI chr16:46,656,132...46,689,178
Ensembl chr16:46,656,132...46,689,518 		JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP1A charged multivesicular body protein 1A involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr16:89,644,435...89,657,708
Ensembl chr16:89,640,816...89,657,738 		JBrowse link
G CHMP1B charged multivesicular body protein 1B involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr18:11,851,413...11,854,444
Ensembl chr18:11,851,413...11,854,444 		JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr19:58,551,566...58,555,105
Ensembl chr19:58,551,452...58,555,105 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in TAS
NAS		 (PMID:21118109)
(PMID:16505166)		 ParkinsonsUK-UCL
ComplexPortal
ParkinsonsUK-UCL		 PMID:16505166 PMID:21118109 NCBI chr 3:87,227,309...87,255,556
Ensembl chr 3:87,227,271...87,255,556 		JBrowse link
G CHMP3 charged multivesicular body protein 3 involved_in IMP
NAS		 (PMID:16554368)
(PMID:16505166)		 ParkinsonsUK-UCL
ComplexPortal
ParkinsonsUK-UCL		 PMID:16505166 PMID:16554368 NCBI chr 2:86,503,430...86,563,443
Ensembl chr 2:86,503,430...86,563,479 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr14:24,209,615...24,213,488
Ensembl chr14:24,209,615...24,213,830 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr20:33,811,348...33,854,366
Ensembl chr20:33,811,348...33,854,366 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr 8:81,732,448...81,759,515
Ensembl chr 8:81,732,448...81,759,515 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr 9:33,265,049...33,282,070
Ensembl chr 9:33,264,879...33,282,070 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr17:80,991,841...81,000,133
Ensembl chr17:80,991,598...81,009,517 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in NAS (PMID:16505166) ComplexPortal PMID:16505166 NCBI chr 8:23,243,637...23,261,999
Ensembl chr 8:23,243,637...23,262,000 		JBrowse link
G RNF103-CHMP3 RNF103-CHMP3 readthrough involved_in IMP
NAS		 (PMID:16554368)
(PMID:16505166)		 ParkinsonsUK-UCL
ComplexPortal
ParkinsonsUK-UCL		 PMID:16505166 PMID:16554368 NCBI chr 2:86,503,430...86,721,122
Ensembl chr 2:86,505,668...86,721,122 		JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNPTAB N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in IBA
NAS
IMP		 (PMID:21873635)
(PMID:25505245)
(PMID:19938078), (PMID:25505245)		 GO_Central
ComplexPortal
GO_Central
UniProt
UniProt		 PMID:19938078 PMID:21873635 PMID:25505245 NCBI chr12:101,745,499...101,830,959
Ensembl chr12:101,745,499...101,830,959 		JBrowse link
G GNPTG N-acetylglucosamine-1-phosphate transferase subunit gamma involved_in NAS (PMID:25505245) ComplexPortal PMID:25505245 NCBI chr16:1,351,931...1,364,113
Ensembl chr16:1,351,931...1,365,737 		JBrowse link
negative regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRRK2 leucine rich repeat kinase 2 involved_in TAS (PMID:23949442) ParkinsonsUK-UCL
ParkinsonsUK-UCL		 PMID:23949442 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G VPS35 VPS35 retromer complex component involved_in IMP (PMID:23563491) UniProt
UniProt		 PMID:23563491 NCBI chr16:46,656,132...46,689,178
Ensembl chr16:46,656,132...46,689,518 		JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IBA
IEA		 (PMID:21873635) GO_Central
Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr19:2,100,988...2,164,616
Ensembl chr19:2,100,988...2,164,468 		JBrowse link
G CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 involved_in IBA
IEA		 (PMID:21873635) GO_Central
GO_Central
Ensembl		 PMID:21873635 GO_REF:0000107 NCBI chr22:36,560,857...36,703,752
Ensembl chr22:36,560,857...36,703,752 		JBrowse link
G CACNG3 calcium voltage-gated channel auxiliary subunit gamma 3 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr16:24,256,335...24,362,412
Ensembl chr16:24,256,335...24,362,412 		JBrowse link
G CACNG4 calcium voltage-gated channel auxiliary subunit gamma 4 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr17:66,964,707...67,033,398
Ensembl chr17:66,964,707...67,033,398 		JBrowse link
G CACNG5 calcium voltage-gated channel auxiliary subunit gamma 5 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr17:66,835,117...66,894,751
Ensembl chr17:66,835,117...66,894,751 		JBrowse link
G CACNG7 calcium voltage-gated channel auxiliary subunit gamma 7 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr19:53,909,278...53,943,950
Ensembl chr19:53,909,278...53,943,950 		JBrowse link
G CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr19:53,962,937...53,990,215
Ensembl chr19:53,962,937...53,990,215 		JBrowse link
positive regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:21421027 RGD:9684860 NCBI chr 1:228,082,708...228,099,212
Ensembl chr 1:228,082,708...228,099,212 		JBrowse link
G SNAPIN SNAP associated protein involved_in TAS (PMID:23949442) ParkinsonsUK-UCL
ParkinsonsUK-UCL		 PMID:23949442 NCBI chr 1:153,658,654...153,661,852
Ensembl chr 1:153,658,703...153,661,852 		JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2679144|PMID:14557411) Ensembl
Ensembl
MGI		 PMID:14557411 GO_REF:0000107 MGI:2679144 NCBI chr 5:78,000,522...78,294,698
Ensembl chr 5:78,000,522...78,294,762 		JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 involved_in TAS (PMID:10024875) PINC
PINC		 PMID:10024875 NCBI chr10:74,120,255...74,150,828
Ensembl chr10:74,120,255...74,150,842 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IDA (PMID:11139587) UniProt
UniProt		 PMID:11139587 NCBI chr 7:100,100,794...100,109,039
Ensembl chr 7:100,101,549...100,110,345 		JBrowse link
G ATG14 autophagy related 14 involved_in NAS (PMID:16467569) ComplexPortal PMID:16467569 NCBI chr14:55,366,391...55,411,830
Ensembl chr14:55,366,391...55,411,830 		JBrowse link
G BECN1 beclin 1 involved_in NAS (PMID:16467569) ComplexPortal PMID:16467569 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G GCC2 GRIP and coiled-coil domain containing 2 involved_in IMP (PMID:16885419) UniProt
UniProt		 PMID:16885419 NCBI chr 2:108,449,206...108,509,415
Ensembl chr 2:108,449,107...108,509,415 		JBrowse link
G GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in IPI (PMID:17116753) ARUK-UCL
ARUK-UCL		 PMID:17116753 NCBI chr17:75,223,728...75,262,363
Ensembl chr17:75,236,599...75,262,363 		JBrowse link
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate involved_in IMP (PMID:18767904) UniProt
UniProt		 PMID:18767904 NCBI chr17:81,684,011...81,702,121
Ensembl chr17:81,683,326...81,703,138 		JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISS (PMID:8661146) ARUK-UCL
ARUK-UCL		 PMID:8661146 NCBI chr 1:30,732,469...30,757,774
Ensembl chr 1:30,732,469...30,757,774 		JBrowse link
G LHCGR luteinizing hormone/choriogonadotropin receptor involved_in ISO
IEA		 chorionic gonadotropin after receptor internalization RGD
Ensembl		 PMID:10847593 GO_REF:0000107 RGD:2292601 NCBI chr 2:48,686,774...48,755,724
Ensembl chr 2:48,686,774...48,755,730 		JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent involved_in IEA
IBA		 (PMID:21873635) InterPro
InterPro
GO_Central
GO_Central		 PMID:21873635 GO_REF:0000002 NCBI chr12:8,940,361...8,949,645
Ensembl chr12:8,940,361...8,949,761 		JBrowse link
G NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase involved_in TAS (PMID:10551838) PINC
PINC		 PMID:10551838 NCBI chr16:5,024,844...5,033,935
Ensembl chr16:5,024,844...5,034,141 		JBrowse link
G NCOA4 nuclear receptor coactivator 4 acts_upstream_of_or_within IDA (PMID:25327288) MGI
MGI		 PMID:25327288 NCBI chr10:46,005,088...46,030,623
Ensembl chr10:46,005,088...46,030,623 		JBrowse link
G NDP norrin cystine knot growth factor NDP acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5921629|PMID:28675177) MGI
Ensembl		 PMID:28675177 GO_REF:0000107 MGI:5921629 NCBI chr  X:43,948,776...43,973,390
Ensembl chr  X:43,948,776...43,973,395 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in IPI (PMID:17116753) ARUK-UCL
ARUK-UCL		 PMID:17116753 NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,660 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in NAS (PMID:16467569) ComplexPortal PMID:16467569 NCBI chr18:41,955,234...42,087,830
Ensembl chr18:41,955,234...42,087,830 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in NAS (PMID:16467569) ComplexPortal PMID:16467569 NCBI chr 3:130,678,934...130,746,829
Ensembl chr 3:130,678,934...130,746,829 		JBrowse link
G PXK PX domain containing serine/threonine kinase like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:58,332,892...58,426,127
Ensembl chr 3:58,332,880...58,426,127 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IMP (PMID:22115783) BHF-UCL
BHF-UCL		 PMID:22115783 NCBI chr 3:128,726,183...128,814,798
Ensembl chr 3:128,693,669...128,825,942 		JBrowse link
G SCARB2 scavenger receptor class B member 2 involved_in IMP
NAS
IBA
IEA		 (PMID:18022370)
(PMID:25202012)
(PMID:21873635)		 BHF-UCL
ARUK-UCL
GO_Central
Ensembl
BHF-UCL
ARUK-UCL
GO_Central		 PMID:18022370 PMID:21873635 PMID:25202012 GO_REF:0000107 NCBI chr 4:76,158,737...76,234,532
Ensembl chr 4:76,158,737...76,234,536 		JBrowse link
G SNX16 sorting nexin 16 involved_in IMP
IBA		 (PMID:12813048)
(PMID:21873635)		 UniProt
GO_Central
UniProt
GO_Central		 PMID:12813048 PMID:21873635 NCBI chr 8:81,799,583...81,842,185
Ensembl chr 8:81,799,581...81,842,866 		JBrowse link
G SORL1 sortilin related receptor 1 involved_in IBA
IDA		 (PMID:21873635)
(PMID:24523320)		 GO_Central
Alzheimers_University_of_Toronto
GO_Central
Alzheimers_University_of_Toronto		 PMID:21873635 PMID:24523320 NCBI chr11:121,452,314...121,633,763
Ensembl chr11:121,452,314...121,633,763 		JBrowse link
G SORT1 sortilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4368056|PMID:19732768) Ensembl
Ensembl
MGI		 PMID:19732768 GO_REF:0000107 MGI:4368056 NCBI chr 1:109,309,575...109,397,918
Ensembl chr 1:109,309,568...109,397,918 		JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in IMP (PMID:16973552) UniProt
UniProt		 PMID:16973552 NCBI chr16:69,311,350...69,326,939
Ensembl chr16:69,311,350...69,326,939 		JBrowse link
G VPS53 VPS53 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:508,668...714,839
Ensembl chr17:508,503...721,717 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:63,892,150...64,019,428
Ensembl chr 2:63,892,146...64,019,428 		JBrowse link
G WASH3P WASP family homolog 3, pseudogene involved_in IMP (PMID:20175130) UniProt
UniProt		 PMID:20175130 NCBI chr15:101,960,813...101,976,605
Ensembl chr15:101,966,075...101,976,266 		JBrowse link
G ZFYVE16 zinc finger FYVE-type containing 16 involved_in IMP
IBA		 (PMID:11546807)
(PMID:21873635)		 UniProt
UniProt
GO_Central
GO_Central		 PMID:11546807 PMID:21873635 NCBI chr 5:80,407,610...80,483,379
Ensembl chr 5:80,408,013...80,483,379 		JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLU clusterin involved_in IDA (PMID:9228033) ARUK-UCL
ARUK-UCL		 PMID:9228033 NCBI chr 8:27,596,917...27,614,700
Ensembl chr 8:27,596,917...27,614,700 		JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 involved_in IBA
IDA
IMP
TAS		 (PMID:21873635)
(PMID:11559757), (PMID:36586411)
(PMID:26212789)
(PMID:2799391)		 GO_Central
UniProt
GO_Central
ParkinsonsUK-UCL
ParkinsonsUK-UCL		 PMID:2799391 PMID:11559757 PMID:21873635 PMID:26212789 PMID:36586411 NCBI chr11:123,057,489...123,062,462
Ensembl chr11:123,057,489...123,063,230 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 involved_in
acts_upstream_of_or_within		 ISS
IBA
IEA
IMP
ISO		 (PMID:21873635)
(PMID:27628032)
PMID:18644871		 UniProt
GO_Central
Ensembl
UniProt
GO_Central
MGI		 PMID:18644871 PMID:21873635 PMID:27628032 GO_REF:0000024 GO_REF:0000107 RGD:10412301 NCBI chr  X:120,426,148...120,469,349
Ensembl chr  X:120,426,148...120,469,365 		JBrowse link
protein targeting to vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr19:2,100,988...2,164,616
Ensembl chr19:2,100,988...2,164,468 		JBrowse link
G MON1A MON1 homolog A, secretory trafficking associated involved_in IEA InterPro
InterPro
UniProt
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 3:49,908,873...49,929,811
Ensembl chr 3:49,907,160...49,930,173 		JBrowse link
G MON1B MON1 homolog B, secretory trafficking associated involved_in IEA UniProt
InterPro
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr16:77,191,190...77,202,398
Ensembl chr16:77,190,835...77,202,398 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 3:130,678,934...130,746,829
Ensembl chr 3:130,678,934...130,746,829 		JBrowse link
G RNF215 ring finger protein 215 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:30,378,821...30,387,411
Ensembl chr22:30,368,811...30,421,771 		JBrowse link
G VPS13A vacuolar protein sorting 13 homolog A involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 9:77,177,534...77,421,537
Ensembl chr 9:77,177,445...77,421,537 		JBrowse link
G VPS13C vacuolar protein sorting 13 homolog C involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr15:61,852,389...62,060,447
Ensembl chr15:61,852,389...62,060,473 		JBrowse link
G VPS13D vacuolar protein sorting 13 homolog D involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 1:12,230,030...12,512,047
Ensembl chr 1:12,230,030...12,512,047 		JBrowse link
G VPS37A VPS37A subunit of ESCRT-I involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 8:17,246,958...17,333,455
Ensembl chr 8:17,246,931...17,302,427 		JBrowse link
G VPS37B VPS37B subunit of ESCRT-I involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr12:122,865,330...122,896,124
Ensembl chr12:122,865,330...122,896,127 		JBrowse link
G VPS37C VPS37C subunit of ESCRT-I involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr11:61,130,257...61,161,426
Ensembl chr11:61,130,257...61,161,615 		JBrowse link
G VPS37D VPS37D subunit of ESCRT-I involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:73,665,347...73,672,110
Ensembl chr 7:73,667,831...73,672,112 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IBA
IEA		 (PMID:21873635) GO_Central
GO_Central
InterPro
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr 7:38,722,974...38,909,191
Ensembl chr 7:38,722,974...38,932,394 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:63,892,150...64,019,428
Ensembl chr 2:63,892,146...64,019,428 		JBrowse link
G VPS8 VPS8 subunit of CORVET complex involved_in IEA
IBA		 (PMID:21873635) InterPro
GO_Central		 PMID:21873635 GO_REF:0000002 NCBI chr 3:184,812,166...185,052,614
Ensembl chr 3:184,812,143...185,052,614 		JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGM immunity related GTPase M involved_in IDA (PMID:29420192) UniProt PMID:29420192 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IMP (PMID:22020285) ParkinsonsUK-UCL
ParkinsonsUK-UCL		 PMID:22020285 NCBI chr 7:99,027,440...99,144,108
Ensembl chr 7:99,027,440...99,144,108 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IDA (PMID:27498865), (PMID:30612879), (PMID:32715615), (PMID:36221902) UniProt PMID:27498865 PMID:30612879 PMID:32715615 PMID:36221902 NCBI chr 5:179,806,393...179,838,078
Ensembl chr 5:179,806,398...179,838,078 		JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate involved_in NAS (PMID:19278655) ComplexPortal PMID:19278655 NCBI chr17:81,684,011...81,702,121
Ensembl chr17:81,683,326...81,703,138 		JBrowse link
G MVB12A multivesicular body subunit 12A involved_in NAS (PMID:32424346) ComplexPortal PMID:32424346 NCBI chr19:17,405,741...17,425,332
Ensembl chr19:17,405,722...17,433,724 		JBrowse link
G MVB12B multivesicular body subunit 12B involved_in NAS (PMID:32424346) ComplexPortal PMID:32424346 NCBI chr 9:126,326,829...126,507,040
Ensembl chr 9:126,326,829...126,507,041 		JBrowse link
G PTPN23 protein tyrosine phosphatase non-receptor type 23 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:47,381,021...47,413,435
Ensembl chr 3:47,381,011...47,413,435 		JBrowse link
G SNF8 SNF8 subunit of ESCRT-II involved_in IBA
NAS		 (PMID:21873635)
(PMID:18539118)		 GO_Central
ComplexPortal
GO_Central		 PMID:18539118 PMID:21873635 NCBI chr17:48,929,316...48,944,842
Ensembl chr17:48,929,316...48,944,842 		JBrowse link
G STAM signal transducing adaptor molecule involved_in IBA
NAS		 (PMID:21873635)
(PMID:19278655)		 GO_Central
ComplexPortal
GO_Central		 PMID:19278655 PMID:21873635 NCBI chr10:17,644,151...17,716,824
Ensembl chr10:17,644,151...17,716,824 		JBrowse link
G STAM2 signal transducing adaptor molecule 2 involved_in NAS (PMID:19278655) ComplexPortal PMID:19278655 NCBI chr 2:152,116,801...152,175,763
Ensembl chr 2:152,116,801...152,175,763 		JBrowse link
G TSG101 tumor susceptibility 101 involved_in NAS (PMID:32424346) ComplexPortal PMID:32424346 NCBI chr11:18,480,311...18,526,942
Ensembl chr11:18,468,336...18,526,951 		JBrowse link
G UBAP1 ubiquitin associated protein 1 involved_in NAS (PMID:32424346) ComplexPortal PMID:32424346 NCBI chr 9:34,179,005...34,252,523
Ensembl chr 9:34,179,005...34,252,523 		JBrowse link
G VPS25 vacuolar protein sorting 25 homolog involved_in IBA
NAS		 (PMID:21873635)
(PMID:18539118)		 GO_Central
ComplexPortal
GO_Central		 PMID:18539118 PMID:21873635 NCBI chr17:42,773,449...42,779,599
Ensembl chr17:42,773,449...42,779,599 		JBrowse link
G VPS28 VPS28 subunit of ESCRT-I involved_in IBA
NAS
IEA		 (PMID:21873635)
(PMID:32424346)		 GO_Central
ComplexPortal
GO_Central
UniProt		 PMID:21873635 PMID:32424346 GO_REF:0000104 NCBI chr 8:144,423,617...144,428,548
Ensembl chr 8:144,423,601...144,428,563 		JBrowse link
G VPS36 vacuolar protein sorting 36 homolog involved_in IBA
NAS
IEA		 (PMID:21873635)
(PMID:18539118)		 GO_Central
ComplexPortal
GO_Central
UniProt
UniProt		 PMID:18539118 PMID:21873635 GO_REF:0000104 NCBI chr13:52,412,606...52,450,634
Ensembl chr13:52,412,602...52,450,634 		JBrowse link
G VPS37A VPS37A subunit of ESCRT-I involved_in NAS (PMID:32424346) ComplexPortal PMID:32424346 NCBI chr 8:17,246,958...17,333,455
Ensembl chr 8:17,246,931...17,302,427 		JBrowse link
G VPS37B VPS37B subunit of ESCRT-I involved_in NAS (PMID:32424346) ComplexPortal PMID:32424346 NCBI chr12:122,865,330...122,896,124
Ensembl chr12:122,865,330...122,896,127 		JBrowse link
G VPS37C VPS37C subunit of ESCRT-I involved_in NAS (PMID:32424346) ComplexPortal PMID:32424346 NCBI chr11:61,130,257...61,161,426
Ensembl chr11:61,130,257...61,161,615 		JBrowse link
G VPS37D VPS37D subunit of ESCRT-I involved_in NAS (PMID:32424346) ComplexPortal PMID:32424346 NCBI chr 7:73,665,347...73,672,110
Ensembl chr 7:73,667,831...73,672,112 		JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VAMP7 vesicle associated membrane protein 7 acts_upstream_of_or_within ISO (MGI:3774712|PMID:18227281) MGI PMID:18227281 MGI:3774712 NCBI chr  X:155,881,345...155,943,769
NCBI chr  Y:57,067,865...57,130,289
Ensembl chr  X:155,881,345...155,943,769 		JBrowse link
zinc ion import into lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC30A2 solute carrier family 30 member 2 involved_in IMP (PMID:25808614) UniProt PMID:25808614 NCBI chr 1:26,037,252...26,046,118
Ensembl chr 1:26,037,252...26,046,118 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19824
    localization 6029
      cellular localization 3924
        intracellular transport 1828
          vacuolar transport 181
            Golgi to vacuole transport + 22
            endocytosed protein transport to vacuole 0
            late endosome to vacuole transport + 39
            lysosomal transport + 143
            negative regulation of vacuolar transport + 2
            plastid to vacuole vesicle-mediated transport 0
            positive regulation of vacuolar transport + 2
            protein targeting to vacuole + 50
            regulation of vacuolar transport + 5
            retrograde transport, vacuole to Golgi 0
Path 2
Term Annotations click to browse term
  biological_process 19824
    cellular process 18112
      cellular localization 3924
        establishment of localization in cell 2527
          intracellular transport 1828
            vacuolar transport 181
              Golgi to vacuole transport + 22
              endocytosed protein transport to vacuole 0
              late endosome to vacuole transport + 39
              lysosomal transport + 143
              negative regulation of vacuolar transport + 2
              plastid to vacuole vesicle-mediated transport 0
              positive regulation of vacuolar transport + 2
              protein targeting to vacuole + 50
              regulation of vacuolar transport + 5
              retrograde transport, vacuole to Golgi 0
paths to the root