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ONTOLOGY REPORT - ANNOTATIONS

Term:vacuolar transport
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Accession:GO:0007034 term browser browse the term
Definition:The directed movement of substances into, out of or within a vacuole.

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show annotations for term's descendants           Sort by:
vacuolar transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps4b vacuolar protein sorting 4 homolog B acts_upstream_of_or_within ISO (MGI:5921629|PMID:28675177) MGI PMID:28675177 MGI:5921629 NCBI chrNW_004955402:47,154,350...47,183,979
Ensembl chrNW_004955402:47,154,007...47,184,021 		JBrowse link
endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aktip AKT interacting protein involved_in ISO (PMID:18799622) UniProt PMID:18799622 NCBI chrNW_004955433:11,237,717...11,248,638
Ensembl chrNW_004955433:11,237,717...11,248,249 		JBrowse link
G Atg14 autophagy related 14 acts_upstream_of_or_within ISO (PMID:22797916) MGI PMID:22797916 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Bin1 bridging integrator 1 involved_in ISO (PMID:27179792) ARUK-UCL PMID:27179792 NCBI chrNW_004955459:3,376,149...3,423,157
Ensembl chrNW_004955459:3,399,611...3,422,621 		JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (MGI:4457791|PMID:20551175) MGI PMID:20551175 MGI:4457791 NCBI chrNW_004955497:7,316,372...7,321,627 JBrowse link
G Dennd3 DENN domain containing 3 involved_in ISO (MGI:5448516|PMID:21718402) UniProt PMID:21718402 MGI:5448516 NCBI chrNW_004955454:185,299...253,935
Ensembl chrNW_004955454:185,299...253,428 		JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in ISO (PMID:24790097) UniProt PMID:24790097 NCBI chrNW_004955427:21,806,170...21,812,701
Ensembl chrNW_004955427:21,806,192...21,815,031 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor involved_in ISO (PMID:29130391) UniProt PMID:29130391 NCBI chrNW_004955402:31,422,848...31,532,189
Ensembl chrNW_004955402:31,422,848...31,532,289 		JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in ISO (PMID:18799622) UniProt PMID:18799622 NCBI chrNW_004955414:21,954,103...21,977,877
Ensembl chrNW_004955414:21,954,103...21,977,875 		JBrowse link
G Gprasp1 G protein-coupled receptor associated sorting protein 1 involved_in ISO (PMID:23954414) UniProt PMID:23954414 NCBI chrNW_004955548:132,373...137,817
Ensembl chrNW_004955548:133,425...137,468 		JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate ISO RGD PMID:19808888 RGD:4892648 NCBI chrNW_004955506:1,405,543...1,418,095
Ensembl chrNW_004955506:1,405,543...1,418,095 		JBrowse link
G Hook1 hook microtubule tethering protein 1 involved_in ISO (PMID:18799622) UniProt PMID:18799622 NCBI chrNW_004955464:47,895...129,414
Ensembl chrNW_004955464:47,732...129,414 		JBrowse link
G Hook2 hook microtubule tethering protein 2 involved_in ISO (PMID:18799622) UniProt PMID:18799622 NCBI chrNW_004955415:31,855,183...31,865,413
Ensembl chrNW_004955415:31,853,091...31,865,450 		JBrowse link
G Hook3 hook microtubule tethering protein 3 involved_in ISO (PMID:18799622) UniProt PMID:18799622 NCBI chrNW_004955457:13,149,013...13,249,524
Ensembl chrNW_004955457:13,149,013...13,249,321 		JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) UniProt PMID:19841138 NCBI chrNW_004955483:8,191,514...8,366,645
Ensembl chrNW_004955483:8,191,514...8,366,645 		JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within ISO (MGI:6510385|PMID:33357458) MGI PMID:33357458 MGI:6510385 NCBI chrNW_004955425:3,718,291...3,755,942
Ensembl chrNW_004955425:3,718,206...3,756,142 		JBrowse link
G Mgrn1 mahogunin ring finger 1 involved_in ISO (PMID:17229889) UniProt PMID:17229889 NCBI chrNW_004955442:12,780,795...12,823,716
Ensembl chrNW_004955442:12,781,539...12,824,222 		JBrowse link
G Mtm1 myotubularin 1 involved_in ISO (PMID:14722070) UniProt PMID:14722070 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISO (MGI:5448516|PMID:21718402) UniProt PMID:21718402 MGI:5448516 NCBI chrNW_004955402:3,102,709...3,109,701
Ensembl chrNW_004955402:3,103,708...3,110,701 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:18272684) BHF-UCL PMID:18272684 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Rhob ras homolog family member B involved_in ISO (PMID:10508588) UniProt PMID:10508588 NCBI chrNW_004955469:2,964,968...2,966,998
Ensembl chrNW_004955469:2,965,041...2,965,631 		JBrowse link
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:18272684) BHF-UCL PMID:18272684 NCBI chrNW_004955481:1,531,175...1,534,794
Ensembl chrNW_004955481:1,531,574...1,534,443 		JBrowse link
G Scyl2 SCY1 like pseudokinase 2 involved_in ISO (PMID:19643732) BHF-UCL PMID:19643732 NCBI chrNW_004955405:35,984,667...36,043,581
Ensembl chrNW_004955405:35,984,667...36,043,628 		JBrowse link
G Snapin SNAP associated protein acts_upstream_of_or_within ISO (PMID:22797916) MGI PMID:22797916 NCBI chrNW_004955545:306,546...308,229
Ensembl chrNW_004955545:306,546...308,229 		JBrowse link
G Snx16 sorting nexin 16 involved_in ISO (PMID:12813048) UniProt PMID:12813048 NCBI chrNW_004955417:159,369...209,166
Ensembl chrNW_004955417:159,312...209,183 		JBrowse link
G Sort1 sortilin 1 involved_in ISO (PMID:11331584) BHF-UCL PMID:11331584 NCBI chrNW_004955435:12,725,952...12,819,280
Ensembl chrNW_004955435:12,730,270...12,819,029 		JBrowse link
G Stx7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chrNW_004955436:12,928,274...12,975,745 JBrowse link
G Stx8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chrNW_004955467:7,524,223...7,789,630
Ensembl chrNW_004955467:7,523,464...7,792,056 		JBrowse link
G Tgfbrap1 transforming growth factor beta receptor associated protein 1 involved_in ISO (PMID:25266290) UniProt PMID:25266290 NCBI chrNW_004955470:10,178,936...10,223,234
Ensembl chrNW_004955470:10,176,607...10,223,234 		JBrowse link
G Trak1 trafficking kinesin protein 1 involved_in ISO (PMID:18675823) UniProt PMID:18675823 NCBI chrNW_004955420:28,457,179...28,547,585
Ensembl chrNW_004955420:28,454,812...28,549,489 		JBrowse link
G Trak2 trafficking kinesin protein 2 ISO RGD PMID:17062640 RGD:13208835 NCBI chrNW_004955403:205,372...261,210
Ensembl chrNW_004955403:206,146...261,326 		JBrowse link
G Tsg101 tumor susceptibility 101 ISO RGD PMID:19808888 RGD:4892648 NCBI chrNW_004955414:33,154,812...33,193,769
Ensembl chrNW_004955414:33,154,812...33,193,769 		JBrowse link
G Vamp7 vesicle associated membrane protein 7 involved_in ISO (PMID:10888671)
PMID:15133481		 RGD
UniProt		 PMID:10888671 PMID:15133481 RGD:4892614 NCBI chrNW_004955594:20,496...72,648
Ensembl chrNW_004955594:18,727...72,654 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in
NOT|involved_in		 ISO (PMID:19109425)
(PMID:25783203)		 UniProt PMID:19109425 PMID:25783203 NCBI chrNW_004955438:1,320,862...1,351,344
Ensembl chrNW_004955438:1,321,845...1,347,535 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955412:20,161,520...20,190,141
Ensembl chrNW_004955412:20,177,623...20,190,141 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955415:13,791,611...13,813,500
Ensembl chrNW_004955415:13,791,611...13,813,500 		JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955416:7,772,653...7,780,408
Ensembl chrNW_004955416:7,772,653...7,782,542 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955482:6,333,282...6,352,369
Ensembl chrNW_004955482:6,332,366...6,353,834 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955416:15,049,849...15,071,108
Ensembl chrNW_004955416:15,048,106...15,071,102 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:25266290), (PMID:25783203) UniProt PMID:25266290 PMID:25783203 NCBI chrNW_004955416:8,893,249...8,936,351
Ensembl chrNW_004955416:8,893,249...8,936,351 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chrNW_004955460:4,555,870...4,749,154
Ensembl chrNW_004955460:4,555,870...4,749,153 		JBrowse link
endosome to lysosome transport of low-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP ribosylation factor like GTPase 8B involved_in ISO (PMID:21802320) UniProt PMID:21802320 NCBI chrNW_004955421:8,231,337...8,276,907
Ensembl chrNW_004955421:8,231,582...8,276,907 		JBrowse link
G Tpcn2 two pore segment channel 2 involved_in ISO (MGI:5691857|PMID:25144390) UniProt PMID:25144390 MGI:5691857 NCBI chrNW_004955422:16,899,730...16,923,962
Ensembl chrNW_004955422:16,900,239...16,923,978 		JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyst lysosomal trafficking regulator involved_in ISO (PMID:9606205) UniProt PMID:9606205 NCBI chrNW_004955492:4,161,976...4,371,637
Ensembl chrNW_004955492:4,209,749...4,369,762 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:21822278) UniProt PMID:21822278 NCBI chrNW_004955495:4,456,182...4,465,954
Ensembl chrNW_004955495:4,456,308...4,466,254 		JBrowse link
G Vcp valosin containing protein involved_in ISO (PMID:21822278) UniProt PMID:21822278 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:15024011) UniProt PMID:15024011 NCBI chrNW_004955402:47,154,350...47,183,979
Ensembl chrNW_004955402:47,154,007...47,184,021 		JBrowse link
Golgi to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 involved_in ISO (PMID:22284051) UniProt PMID:22284051 NCBI chrNW_004955467:12,644,070...12,734,546
Ensembl chrNW_004955467:12,644,098...12,730,711 		JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:23632890) UniProt PMID:23632890 NCBI chrNW_004955484:4,430,461...4,511,368
Ensembl chrNW_004955484:4,430,461...4,510,497 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:11139587) UniProt PMID:11139587 NCBI chrNW_004955573:759,222...763,222
Ensembl chrNW_004955573:759,222...763,222 		JBrowse link
G Ccdc91 coiled-coil domain containing 91 involved_in ISO (PMID:17596511) UniProt PMID:17596511 NCBI chrNW_004955505:6,269,667...6,613,191
Ensembl chrNW_004955505:6,266,918...6,535,059 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:18817525) UniProt PMID:18817525 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Ehd3 EH domain containing 3 involved_in ISO (PMID:19139087) UniProt PMID:19139087 NCBI chrNW_004955469:12,953,800...12,984,296
Ensembl chrNW_004955469:12,953,645...12,984,430 		JBrowse link
G Gak cyclin G associated kinase involved_in ISO (PMID:16155256) ParkinsonsUK-UCL PMID:16155256 NCBI chrNW_004955514:391,305...434,198
Ensembl chrNW_004955514:387,179...434,077 		JBrowse link
G Lamp1 lysosomal associated membrane protein 1 involved_in ISO (PMID:23632890) UniProt PMID:23632890 NCBI chrNW_004955404:557,090...573,532
Ensembl chrNW_004955404:557,862...573,379 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:6478861|PMID:24638062) ARUK-UCL PMID:24638062 MGI:6478861 NCBI chrNW_004955452:9,335,481...9,358,177
Ensembl chrNW_004955452:9,334,587...9,358,444 		JBrowse link
G Rbsn rabenosyn, RAB effector involved_in ISO (PMID:19139087) UniProt PMID:19139087 NCBI chrNW_004955429:17,444,031...17,468,024
Ensembl chrNW_004955429:17,444,622...17,468,050 		JBrowse link
G Sort1 sortilin 1 involved_in ISO (PMID:16787399) UniProt PMID:16787399 NCBI chrNW_004955435:12,725,952...12,819,280
Ensembl chrNW_004955435:12,730,270...12,819,029 		JBrowse link
late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP ribosylation factor like GTPase 8B involved_in ISO (PMID:28325809)
(MGI:6508507|PMID:25637027)		 UniProt PMID:25637027 PMID:28325809 MGI:6508507 NCBI chrNW_004955421:8,231,337...8,276,907
Ensembl chrNW_004955421:8,231,582...8,276,907 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (MGI:5779453|PMID:26989253) UniProt PMID:26989253 MGI:5779453 NCBI chrNW_004955472:7,299,092...7,337,591
Ensembl chrNW_004955472:7,310,788...7,337,735 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955541:3,216,972...3,223,636
Ensembl chrNW_004955541:3,216,972...3,223,634 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955402:1,196,912...1,199,480 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955584:1,156,828...1,160,056
Ensembl chrNW_004955584:1,156,828...1,160,056 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955407:6,014,478...6,047,916
Ensembl chrNW_004955407:6,014,478...6,047,916 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955422:27,482,239...27,526,798
Ensembl chrNW_004955422:27,478,698...27,526,575 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955417:96,674...135,601
Ensembl chrNW_004955417:96,865...137,739 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955506:1,987,710...1,994,731
Ensembl chrNW_004955506:1,987,195...1,994,666 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chrNW_004955403:46,467,463...46,478,897
Ensembl chrNW_004955403:46,467,463...46,478,897 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO (PMID:28325809) UniProt PMID:28325809 NCBI chrNW_004955451:18,043,194...18,079,808
Ensembl chrNW_004955451:18,043,194...18,079,873 		JBrowse link
G Snapin SNAP associated protein acts_upstream_of_or_within ISO (MGI:4879078|PMID:20920792) MGI PMID:20920792 MGI:4879078 NCBI chrNW_004955545:306,546...308,229
Ensembl chrNW_004955545:306,546...308,229 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:23167963) UniProt PMID:23167963 NCBI chrNW_004955416:8,893,249...8,936,351
Ensembl chrNW_004955416:8,893,249...8,936,351 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in ISO (PMID:23167963) UniProt PMID:23167963 NCBI chrNW_004955460:4,555,870...4,749,154
Ensembl chrNW_004955460:4,555,870...4,749,153 		JBrowse link
late endosome to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:16856878) UniProt PMID:16856878 NCBI chrNW_004955403:46,467,463...46,478,897
Ensembl chrNW_004955403:46,467,463...46,478,897 		JBrowse link
lysosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 acts_upstream_of_or_within ISO (PMID:12837691) MGI PMID:12837691 NCBI chrNW_004955403:22,449...104,577
Ensembl chrNW_004955403:22,449...104,948 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:31996848) UniProt PMID:31996848 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Grn granulin precursor involved_in ISO (PMID:28541286)
(MGI:5920379|PMID:28541286)		 UniProt PMID:28541286 MGI:5920379 NCBI chrNW_004955451:17,368,600...17,371,981
Ensembl chrNW_004955451:17,368,428...17,372,377 		JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase involved_in ISO (PMID:20650889) UniProt PMID:20650889 NCBI chrNW_004955457:13,351,963...13,386,521
Ensembl chrNW_004955457:13,349,213...13,387,251 		JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in ISO (MGI:5701557|PMID:26370502) UniProt PMID:26370502 MGI:5701557 NCBI chrNW_004955458:4,861,431...4,941,939
Ensembl chrNW_004955458:4,861,431...4,941,146 		JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent involved_in ISO (MGI:5701557|PMID:26370502) UniProt PMID:26370502 MGI:5701557 NCBI chrNW_004955413:6,144,486...6,156,860
Ensembl chrNW_004955413:6,144,105...6,156,854 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:18544533) UniProt PMID:18544533 NCBI chrNW_004955409:183,645...281,252
Ensembl chrNW_004955409:183,545...281,318 		JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:17452316) BHF-UCL PMID:17452316 NCBI chrNW_004955464:4,424,583...4,439,805
Ensembl chrNW_004955464:4,425,435...4,439,842 		JBrowse link
G Psap prosaposin involved_in ISO (PMID:26370502)
(PMID:28541286), (PMID:28835281)		 UniProt PMID:26370502 PMID:28541286 PMID:28835281 NCBI chrNW_004955437:19,667,252...19,683,669 JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISO (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:5467668 NCBI chrNW_004955481:4,441,290...4,445,969
Ensembl chrNW_004955481:4,441,407...4,445,969 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 acts_upstream_of_or_within ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004955416:8,643,177...8,684,469 JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within ISO (MGI:5588048|PMID:25066864) MGI PMID:25066864 MGI:5588048 NCBI chrNW_004955432:18,619,418...18,644,876
Ensembl chrNW_004955432:18,619,413...18,639,151 		JBrowse link
G Tmem251 transmembrane protein 251 involved_in ISO (PMID:36074821), (PMID:36074822) UniProt PMID:36074821 PMID:36074822 NCBI chrNW_004955438:15,305,699...15,309,851 JBrowse link
G Vps51 VPS51 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:25799061) MGI PMID:25799061 NCBI chrNW_004955422:20,091,682...20,102,371
Ensembl chrNW_004955422:20,091,682...20,102,938 		JBrowse link
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:25799061) MGI PMID:25799061 NCBI chrNW_004955437:1,820,355...1,833,615
Ensembl chrNW_004955437:1,820,817...1,833,363 		JBrowse link
G Vps53 VPS53 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:25799061) MGI PMID:25799061 NCBI chrNW_004955481:2,130,669...2,265,065
Ensembl chrNW_004955481:2,130,888...2,264,924 		JBrowse link
G Vps54 VPS54 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:25799061) MGI PMID:25799061 NCBI chrNW_004955424:20,329,009...20,443,652
Ensembl chrNW_004955424:20,327,754...20,445,980 		JBrowse link
mitochondrion to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:24446486) ParkinsonsUK-UCL PMID:24446486 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:24446486) ParkinsonsUK-UCL PMID:24446486 NCBI chrNW_004955439:18,664,230...19,953,358
Ensembl chrNW_004955439:18,664,379...19,951,152 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:26618722) ParkinsonsUK-UCL PMID:26618722 NCBI chrNW_004955448:207,582...240,264
Ensembl chrNW_004955448:204,991...240,160 		JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in ISO (PMID:19938078), (PMID:25505245) UniProt PMID:19938078 PMID:25505245 NCBI chrNW_004955405:37,107,902...37,136,993
Ensembl chrNW_004955405:37,107,542...37,136,993 		JBrowse link
negative regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:23563491) UniProt PMID:23563491 NCBI chrNW_004955448:207,582...240,264
Ensembl chrNW_004955448:204,991...240,160 		JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO (MGI:5819335|PMID:24217640) SynGO PMID:24217640 MGI:5819335 NCBI chrNW_004955495:5,972,177...6,012,525
Ensembl chrNW_004955495:5,972,433...6,012,433 		JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 involved_in ISO (MGI:5819335|PMID:24217640) SynGO PMID:24217640 MGI:5819335 NCBI chrNW_004955413:23,136,369...23,248,231
Ensembl chrNW_004955413:23,132,896...23,248,231 		JBrowse link
positive regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP ribosylation factor 1 ISO RGD PMID:21421027 RGD:9684860 NCBI chrNW_004955581:319,942...335,112
Ensembl chrNW_004955581:319,942...335,112 		JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (MGI:2679144|PMID:14557411) MGI PMID:14557411 MGI:2679144 NCBI chrNW_004955425:22,792,616...23,051,509
Ensembl chrNW_004955425:22,792,616...23,051,737 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:11139587) UniProt PMID:11139587 NCBI chrNW_004955573:759,222...763,222
Ensembl chrNW_004955573:759,222...763,222 		JBrowse link
G Gcc2 GRIP and coiled-coil domain containing 2 involved_in ISO (PMID:16885419) UniProt PMID:16885419 NCBI chrNW_004955470:12,011,606...12,053,625
Ensembl chrNW_004955470:12,011,708...12,055,907 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in ISO (PMID:17116753) ARUK-UCL PMID:17116753 NCBI chrNW_004955553:2,103,694...2,124,748
Ensembl chrNW_004955553:2,108,379...2,124,748 		JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate involved_in ISO (PMID:18767904) UniProt PMID:18767904 NCBI chrNW_004955506:1,405,543...1,418,095
Ensembl chrNW_004955506:1,405,543...1,418,095 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:3803048|PMID:18619870) ARUK-UCL PMID:18619870 MGI:3803048 NCBI chrNW_004955452:9,335,481...9,358,177
Ensembl chrNW_004955452:9,334,587...9,358,444 		JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor ISO chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chrNW_004955441:15,205,883...15,263,617
Ensembl chrNW_004955441:15,207,252...15,242,914 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 acts_upstream_of_or_within ISO (PMID:25327288) MGI PMID:25327288 NCBI chrNW_004955556:392,412...413,643
Ensembl chrNW_004955556:392,398...412,166 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (MGI:5921629|PMID:28675177) MGI PMID:28675177 MGI:5921629 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:17116753) ARUK-UCL PMID:17116753 NCBI chrNW_004955409:183,645...281,252
Ensembl chrNW_004955409:183,545...281,318 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:22115783) BHF-UCL PMID:22115783 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Scarb2 scavenger receptor class B member 2 involved_in ISO (PMID:18022370)
(MGI:3773765|PMID:18022370)		 BHF-UCL PMID:18022370 MGI:3773765 NCBI chrNW_004955433:884,740...962,932
Ensembl chrNW_004955433:884,740...962,932 		JBrowse link
G Snx16 sorting nexin 16 involved_in ISO (PMID:12813048) UniProt PMID:12813048 NCBI chrNW_004955417:159,369...209,166
Ensembl chrNW_004955417:159,312...209,183 		JBrowse link
G Sorl1 sortilin related receptor 1 involved_in ISO (PMID:24523320) Alzheimers_University_of_Toronto PMID:24523320 NCBI chrNW_004955412:22,421,984...22,576,179
Ensembl chrNW_004955412:22,421,984...22,576,179 		JBrowse link
G Sort1 sortilin 1 acts_upstream_of_or_within ISO (MGI:4368056|PMID:19732768) MGI PMID:19732768 MGI:4368056 NCBI chrNW_004955435:12,725,952...12,819,280
Ensembl chrNW_004955435:12,730,270...12,819,029 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO (PMID:16973552) UniProt PMID:16973552 NCBI chrNW_004955484:7,368,938...7,375,964
Ensembl chrNW_004955484:7,368,938...7,375,969 		JBrowse link
G Vps53 VPS53 subunit of GARP complex involved_in ISO (MGI:6103674|PMID:28658628) MGI PMID:28658628 MGI:6103674 NCBI chrNW_004955481:2,130,669...2,265,065
Ensembl chrNW_004955481:2,130,888...2,264,924 		JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in ISO (MGI:6103674|PMID:28658628), (MGI:6430941|PMID:32345721) MGI PMID:28658628 PMID:32345721 MGI:6103674 MGI:6430941 NCBI chrNW_004955424:20,329,009...20,443,652
Ensembl chrNW_004955424:20,327,754...20,445,980 		JBrowse link
G Zfyve16 zinc finger FYVE-type containing 16 involved_in ISO (PMID:11546807) UniProt PMID:11546807 NCBI chrNW_004955418:29,353,276...29,403,336 JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin involved_in ISO (PMID:9228033) ARUK-UCL PMID:9228033 NCBI chrNW_004955403:50,160,598...50,175,876
Ensembl chrNW_004955403:50,160,598...50,175,876 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in ISO (PMID:26212789)
(PMID:11559757), (PMID:36586411)		 ParkinsonsUK-UCL
UniProt		 PMID:11559757 PMID:26212789 PMID:36586411 NCBI chrNW_004955412:23,863,513...23,867,984
Ensembl chrNW_004955412:23,862,590...23,867,984 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:27628032)
PMID:18644871
(MGI:5805578|PMID:27628032)		 UniProt
MGI		 PMID:18644871 PMID:27628032 MGI:5805578 RGD:10412301 NCBI chrNW_004955572:1,423,048...1,464,443
Ensembl chrNW_004955572:1,422,981...1,462,622 		JBrowse link
protein targeting to vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps54 VPS54 subunit of GARP complex involved_in ISO (MGI:6161933|PMID:23708095) MGI PMID:23708095 MGI:6161933 NCBI chrNW_004955424:20,329,009...20,443,652
Ensembl chrNW_004955424:20,327,754...20,445,980 		JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgm immunity related GTPase M involved_in ISO (PMID:29420192) UniProt PMID:29420192 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004955460:14,774,545...14,860,783
Ensembl chrNW_004955460:14,774,545...14,802,879 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO (PMID:27498865), (PMID:30612879), (PMID:32715615), (PMID:36221902) UniProt PMID:27498865 PMID:30612879 PMID:32715615 PMID:36221902 NCBI chrNW_004955408:757,426...764,989
Ensembl chrNW_004955408:757,426...771,615 		JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vamp7 vesicle associated membrane protein 7 acts_upstream_of_or_within ISO (MGI:3774712|PMID:18227281) MGI PMID:18227281 MGI:3774712 NCBI chrNW_004955594:20,496...72,648
Ensembl chrNW_004955594:18,727...72,654 		JBrowse link
zinc ion import into lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc30a2 solute carrier family 30 member 2 involved_in ISO (PMID:25808614) UniProt PMID:25808614 NCBI chrNW_004955452:5,507,614...5,515,669
Ensembl chrNW_004955452:5,504,022...5,516,246 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12249
    localization 4107
      cellular localization 2702
        intracellular transport 1164
          vacuolar transport 107
            Golgi to vacuole transport + 11
            endocytosed protein transport to vacuole 0
            late endosome to vacuole transport + 1
            lysosomal transport + 104
            negative regulation of vacuolar transport + 1
            plastid to vacuole vesicle-mediated transport 0
            positive regulation of vacuolar transport + 1
            protein targeting to vacuole + 27
            regulation of vacuolar transport + 3
            retrograde transport, vacuole to Golgi 0
Path 2
Term Annotations click to browse term
  biological_process 12249
    cellular process 11243
      cellular localization 2702
        establishment of localization in cell 1653
          intracellular transport 1164
            vacuolar transport 107
              Golgi to vacuole transport + 11
              endocytosed protein transport to vacuole 0
              late endosome to vacuole transport + 1
              lysosomal transport + 104
              negative regulation of vacuolar transport + 1
              plastid to vacuole vesicle-mediated transport 0
              positive regulation of vacuolar transport + 1
              protein targeting to vacuole + 27
              regulation of vacuolar transport + 3
              retrograde transport, vacuole to Golgi 0
paths to the root