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ONTOLOGY REPORT - ANNOTATIONS

Term:vacuolar transport
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Accession:GO:0007034 term browser browse the term
Definition:The directed movement of substances into, out of or within a vacuole.


show annotations for term's descendants           Sort by:
vacuolar transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP1A charged multivesicular body protein 1A involved_in IEA InterPro GO_REF:0000002 NCBI chr16:70,398,021...70,411,383
Ensembl chr16:90,003,892...90,017,653 		JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IEA InterPro GO_REF:0000002 NCBI chr19:55,564,622...55,568,214
Ensembl chr19:64,377,986...64,381,417 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:87,358,297...87,386,556
Ensembl chr 3:89,471,993...89,501,241 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA InterPro GO_REF:0000002 NCBI chr14:4,985,642...4,989,985 JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA InterPro GO_REF:0000002 NCBI chr20:30,098,796...30,146,347
Ensembl chr20:31,236,778...31,285,264 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:78,259,783...78,286,807
Ensembl chr 8:79,879,716...79,906,852 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:33,043,148...33,059,564
Ensembl chr 9:33,851,377...33,867,942 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:75,415,055...75,423,279
Ensembl chr17:81,144,837...81,151,962 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:22,497,479...22,513,005
Ensembl chr 8:19,434,829...19,450,221 		JBrowse link
G LOC100970314 charged multivesicular body protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr2A:86,559,695...86,619,615
Ensembl chr2A:88,106,242...88,165,104 		JBrowse link
G NDFIP1 Nedd4 family interacting protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:137,467,161...137,511,569
Ensembl chr 5:143,600,789...143,622,913 		JBrowse link
G NDFIP2 Nedd4 family interacting protein 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr13:60,717,590...60,792,373
Ensembl chr13:79,745,362...79,820,286 		JBrowse link
G TM9SF1 transmembrane 9 superfamily member 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:4,965,352...4,972,476 JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA UniProt GO_REF:0000104 NCBI chr 7:39,355,578...39,543,281
Ensembl chr 7:39,590,587...39,776,937 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5921629|PMID:28675177) MGI
Ensembl		 PMID:28675177 GO_REF:0000107 MGI:5921629 NCBI chr18:56,749,439...56,782,660
Ensembl chr18:60,060,285...60,095,109 		JBrowse link
endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKTIP AKT interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:33,731,652...33,743,571
Ensembl chr16:52,815,559...52,827,750 		JBrowse link
G ATG14 autophagy related 14 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22797916) MGI
Ensembl		 PMID:22797916 GO_REF:0000107 NCBI chr14:35,953,228...35,998,650
Ensembl chr14:54,226,720...54,272,018 		JBrowse link
G BECN2 beclin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23954414) MGI
Ensembl		 PMID:23954414 GO_REF:0000107 NCBI chr 1:217,520,628...217,522,177
Ensembl chr 1:222,499,853...222,501,148 		JBrowse link
G BIN1 bridging integrator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:33,168,767...33,228,075
Ensembl chr2B:127,716,550...127,775,378 		JBrowse link
G CDX2 caudal type homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4457791|PMID:20551175) MGI
Ensembl		 PMID:20551175 GO_REF:0000107 MGI:4457791 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632 		JBrowse link
G CHMP5 charged multivesicular body protein 5 acts_upstream_of_or_within ISO (MGI:3622513|PMID:16567502) MGI PMID:16567502 MGI:3622513 NCBI chr 9:33,043,148...33,059,564
Ensembl chr 9:33,851,377...33,867,942 		JBrowse link
G DENND3 DENN domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,805,456...137,873,492
Ensembl chr 8:140,889,343...140,956,967 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:119,654,019...119,664,918
Ensembl chr 3:126,558,924...126,569,807 		JBrowse link
G EPG5 ectopic P-granules 5 autophagy tethering factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:39,129,678...39,250,418
Ensembl chr18:42,669,223...42,788,788 		JBrowse link
G FHIP1B FHF complex subunit HOOK interacting protein 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,345,227...6,368,675
Ensembl chr11:6,027,300...6,050,850 		JBrowse link
G GPRASP1 G protein-coupled receptor associated sorting protein 1 involved_in ISO (PMID:23954414) UniProt PMID:23954414 NCBI chr  X:91,823,855...91,881,439 JBrowse link
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate ISO RGD PMID:19808888 RGD:4892648 NCBI chr17:76,143,212...76,161,469
Ensembl chr17:81,844,379...81,862,335 		JBrowse link
G HOOK1 hook microtubule tethering protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:59,072,565...59,134,191
Ensembl chr 1:60,777,769...60,839,384 		JBrowse link
G HOOK2 hook microtubule tethering protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,325,578...12,340,754
Ensembl chr19:13,070,289...13,082,612 		JBrowse link
G HOOK3 hook microtubule tethering protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:42,145,427...42,278,727
Ensembl chr 8:39,595,762...39,711,043 		JBrowse link
G KIF13A kinesin family member 13A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,593,535...17,836,915
Ensembl chr 6:17,966,994...18,190,286 		JBrowse link
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6510385|PMID:33357458) MGI
Ensembl		 PMID:33357458 GO_REF:0000107 MGI:6510385 NCBI chr10:85,938,240...85,976,610
Ensembl chr10:89,477,082...89,516,874 		JBrowse link
G LOC100970314 charged multivesicular body protein 3 ISO RGD PMID:18076377 RGD:4892661 NCBI chr2A:86,559,695...86,619,615
Ensembl chr2A:88,106,242...88,165,104 		JBrowse link
G MGRN1 mahogunin ring finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:3,550,352...3,615,693
Ensembl chr16:4,740,763...4,782,638 		JBrowse link
G MTM1 myotubularin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381 		JBrowse link
G RAB12 RAB12, member RAS oncogene family involved_in ISO (MGI:5448516|PMID:21718402) UniProt PMID:21718402 MGI:5448516 NCBI chr18:5,646,023...5,675,920
Ensembl chr18:7,972,938...8,027,500 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in ISO (PMID:18272684) BHF-UCL PMID:18272684 NCBI chr 3:125,784,604...125,873,051 JBrowse link
G RHOB ras homolog family member B involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:20,433,576...20,435,986
Ensembl chr2A:20,549,254...20,549,844 		JBrowse link
G RILP Rab interacting lysosomal protein involved_in ISO (PMID:18272684) BHF-UCL PMID:18272684 NCBI chr17:1,631,518...1,635,464
Ensembl chr17:1,528,638...1,531,757 		JBrowse link
G SCYL2 SCY1 like pseudokinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:97,848,852...97,920,561
Ensembl chr12:101,255,412...101,326,808 		JBrowse link
G SNAPIN SNAP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22797916) MGI
Ensembl		 PMID:22797916 GO_REF:0000107 NCBI chr 1:129,014,668...129,018,428
Ensembl chr 1:132,644,320...132,647,095 		JBrowse link
G SNX16 sorting nexin 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:78,324,407...78,367,143
Ensembl chr 8:79,944,729...79,987,430 		JBrowse link
G SNX27 sorting nexin 27 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:126,968,370...127,052,942
Ensembl chr 1:130,612,787...130,695,863 		JBrowse link
G SORT1 sortilin 1 involved_in ISO (PMID:11331584) BHF-UCL PMID:11331584 NCBI chr 1:111,687,119...111,775,339 JBrowse link
G STX7 syntaxin 7 ISO RGD PMID:15133481 RGD:4892614 NCBI chr 6:130,232,041...130,289,326
Ensembl chr 6:134,342,304...134,398,215 		JBrowse link
G STX8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chr17:42,076,600...42,403,334
Ensembl chr17:46,816,859...47,141,816 		JBrowse link
G TGFBRAP1 transforming growth factor beta receptor associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:96,500,444...96,578,068
Ensembl chr2A:106,338,098...106,394,327 		JBrowse link
G TRAK1 trafficking kinesin protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:41,920,678...42,135,881
Ensembl chr 3:42,262,630...42,399,068 		JBrowse link
G TRAK2 trafficking kinesin protein 2 ISO RGD PMID:17062640 RGD:13208835 NCBI chr2B:88,630,665...88,705,709
Ensembl chr2B:206,785,541...206,861,102 		JBrowse link
G TSG101 tumor susceptibility 101 ISO RGD PMID:19808888 RGD:4892648 NCBI chr11:18,518,110...18,564,814
Ensembl chr11:18,189,868...18,248,149 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in ISO (PMID:10888671)
PMID:15133481		 RGD
UniProt		 PMID:10888671 PMID:15133481 RGD:4892614 NCBI chr  X:145,362,432...145,425,097
Ensembl chr  X:155,257,185...155,320,215 		JBrowse link
G VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO
IEA		 (PMID:25783203) UniProt
Ensembl		 PMID:25783203 GO_REF:0000107 NCBI chr14:57,982,041...58,013,037
Ensembl chr14:77,183,185...77,213,382 		JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chr11:113,905,989...113,920,163
Ensembl chr11:117,835,557...117,849,389 		JBrowse link
G VPS16 VPS16 core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:2,931,553...2,956,604
Ensembl chr20:2,695,335...2,720,030 		JBrowse link
G VPS18 VPS18 core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,836,707...19,846,231
Ensembl chr15:38,086,518...38,095,835 		JBrowse link
G VPS33A VPS33A core subunit of CORVET and HOPS complexes involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:119,831,693...119,868,132
Ensembl chr12:123,201,663...123,236,019 		JBrowse link
G VPS33B VPS33B late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) UniProt PMID:25783203 NCBI chr15:69,691,717...69,715,617
Ensembl chr15:88,888,093...88,912,327 		JBrowse link
G VPS39 VPS39 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:21,113,047...21,162,738
Ensembl chr15:39,273,546...39,323,196 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:39,355,578...39,543,281
Ensembl chr 7:39,590,587...39,776,937 		JBrowse link
endosome to lysosome transport of low-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:5,069,592...5,127,301
Ensembl chr 3:5,169,950...5,225,543 		JBrowse link
G TPCN2 two pore segment channel 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:64,139,512...64,227,913
Ensembl chr11:67,438,635...67,478,106 		JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LYST lysosomal trafficking regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:211,229,800...211,451,947
Ensembl chr 1:216,231,824...216,436,293 		JBrowse link
G UBXN6 UBX domain protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,463,259...3,475,428
Ensembl chr19:4,410,952...4,423,092 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:56,749,439...56,782,660
Ensembl chr18:60,060,285...60,095,109 		JBrowse link
Golgi to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKFY1 ankyrin repeat and FYVE domain containing 1 involved_in ISO (PMID:22284051) UniProt PMID:22284051 NCBI chr17:4,217,880...4,316,017
Ensembl chr17:4,209,250...4,307,328 		JBrowse link
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:53,201,859...53,282,437
Ensembl chr16:71,568,863...71,648,744 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,137,085...92,142,756
Ensembl chr 7:105,570,205...105,575,971 		JBrowse link
G CCDC91 coiled-coil domain containing 91 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:57,678,990...58,123,663
Ensembl chr12:60,385,041...60,676,959 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:18817525) UniProt PMID:18817525
G EHD3 EH domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:31,245,908...31,280,485
Ensembl chr2A:31,317,432...31,353,312 		JBrowse link
G GAK cyclin G associated kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:952,474...1,049,612
Ensembl chr 4:883,096...967,473 		JBrowse link
G LAMP1 lysosomal associated membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,442,507...94,464,061
Ensembl chr13:113,507,401...113,530,457 		JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISO (MGI:6478861|PMID:24638062) ARUK-UCL PMID:24638062 MGI:6478861 NCBI chr 1:30,005,941...30,031,366
Ensembl chr 1:31,032,963...31,058,385 		JBrowse link
G RBSN rabenosyn, RAB effector involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:14,994,647...15,023,733
Ensembl chr 3:15,333,359...15,362,361 		JBrowse link
G SORT1 sortilin 1 involved_in ISO (PMID:16787399) UniProt PMID:16787399 NCBI chr 1:111,687,119...111,775,339 JBrowse link
Golgi to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3S1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:111,195,900...111,268,129
Ensembl chr 5:116,992,049...117,063,727 		JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:68,524,982...68,583,917 JBrowse link
G ARPIN actin related protein 2/3 complex inhibitor involved_in IEA InterPro GO_REF:0000002 NCBI chr15:68,585,634...68,602,105 JBrowse link
late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:5,069,592...5,127,301
Ensembl chr 3:5,169,950...5,225,543 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:27,395,054...27,422,282
Ensembl chr 9:28,001,813...28,022,066 		JBrowse link
G CHMP1A charged multivesicular body protein 1A involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr16:70,398,021...70,411,383
Ensembl chr16:90,003,892...90,017,653 		JBrowse link
G CHMP1B charged multivesicular body protein 1B involved_in ISO (PMID:17984323) ComplexPortal PMID:17984323 NCBI chr18:2,452,393...2,455,509 JBrowse link
G CHMP2A charged multivesicular body protein 2A involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr19:55,564,622...55,568,214
Ensembl chr19:64,377,986...64,381,417 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:87,358,297...87,386,556
Ensembl chr 3:89,471,993...89,501,241 		JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA UniProt GO_REF:0000117 NCBI chr14:4,985,642...4,989,985 JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr20:30,098,796...30,146,347
Ensembl chr20:31,236,778...31,285,264 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 8:78,259,783...78,286,807
Ensembl chr 8:79,879,716...79,906,852 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:33,043,148...33,059,564
Ensembl chr 9:33,851,377...33,867,942 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IEA UniProt GO_REF:0000117 NCBI chr17:75,415,055...75,423,279
Ensembl chr17:81,144,837...81,151,962 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 8:22,497,479...22,513,005
Ensembl chr 8:19,434,829...19,450,221 		JBrowse link
G LOC100970314 charged multivesicular body protein 3 involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chr2A:86,559,695...86,619,615
Ensembl chr2A:88,106,242...88,165,104 		JBrowse link
G PLEKHM1 pleckstrin homology and RUN domain containing M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:11,836,726...11,891,614
Ensembl chr17:12,011,604...12,063,912 		JBrowse link
G SNAPIN SNAP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4879078|PMID:20920792) MGI
Ensembl		 PMID:20920792 GO_REF:0000107 MGI:4879078 NCBI chr 1:129,014,668...129,018,428
Ensembl chr 1:132,644,320...132,647,095 		JBrowse link
G TM9SF1 transmembrane 9 superfamily member 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr14:4,965,352...4,972,476 JBrowse link
G VPS39 VPS39 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:21,113,047...21,162,738
Ensembl chr15:39,273,546...39,323,196 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:39,355,578...39,543,281
Ensembl chr 7:39,590,587...39,776,937 		JBrowse link
late endosome to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP7 charged multivesicular body protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:22,497,479...22,513,005
Ensembl chr 8:19,434,829...19,450,221 		JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:127,743,873...127,834,512
Ensembl chr 3:135,089,584...135,157,193 		JBrowse link
late endosome to vacuole transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VTA1 vesicle trafficking 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:139,914,978...139,988,419
Ensembl chr 6:143,988,724...144,061,746 		JBrowse link
lysosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALS2 alsin Rho guanine nucleotide exchange factor ALS2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12837691) MGI
Ensembl		 PMID:12837691 GO_REF:0000107 NCBI chr2B:88,954,167...89,034,764
Ensembl chr2B:207,108,952...207,189,623 		JBrowse link
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:15,929,613...15,955,631
Ensembl chr 1:16,986,385...17,006,033
Ensembl chr 1:16,986,385...17,006,033 		JBrowse link
G GRN granulin precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:13,046,329...13,054,236
Ensembl chr17:13,211,784...13,219,609 		JBrowse link
G HGSNAT heparan-alpha-glucosaminide N-acetyltransferase involved_in ISO (PMID:20650889) UniProt PMID:20650889 NCBI chr 8:42,388,406...42,448,466 JBrowse link
G HSPA1A heat shock protein family A (Hsp70) member 1A involved_in ISO (MGI:6274951|PMID:27789271) UniProt PMID:27789271 MGI:6274951 NCBI chr 6:31,476,710...31,491,411 JBrowse link
G IGF2R insulin like growth factor 2 receptor involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:157,852,565...157,990,049
Ensembl chr 6:162,878,661...162,997,762 		JBrowse link
G LOC100968477 VPS53 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chr17:400,048...576,119
Ensembl chr17:414,782...604,705 		JBrowse link
G LRP1 LDL receptor related protein 1 involved_in ISO (MGI:5701557|PMID:26370502) UniProt PMID:26370502 MGI:5701557 NCBI chr12:31,713,938...31,799,287
Ensembl chr12:31,966,149...32,051,979 		JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:9,025,394...9,034,768
Ensembl chr12:9,256,706...9,266,428 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:18544533) UniProt PMID:18544533 NCBI chr15:34,798,880...34,963,823
Ensembl chr15:53,118,411...53,283,076 		JBrowse link
G PCSK9 proprotein convertase subtilisin/kexin type 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:54,323,036...54,355,397
Ensembl chr 1:55,911,016...55,936,456 		JBrowse link
G PSAP prosaposin involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:68,286,359...68,321,349
Ensembl chr10:70,810,881...70,828,781 		JBrowse link
G RAB34 RAB34, member RAS oncogene family involved_in ISO (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:5467668 NCBI chr17:28,057,077...28,061,234
Ensembl chr17:28,562,118...28,566,242 		JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 acts_upstream_of_or_within ISO (PMID:23704327) MGI PMID:23704327 NCBI chr15:20,789,568...20,839,907 JBrowse link
G TMEM106B transmembrane protein 106B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5588048|PMID:25066864) MGI
Ensembl		 PMID:25066864 GO_REF:0000107 MGI:5588048 NCBI chr 7:12,905,192...12,931,170
Ensembl chr 7:12,250,010...12,270,693 		JBrowse link
G TMEM251 transmembrane protein 251 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:73,817,605...73,819,747
Ensembl chr14:93,154,232...93,156,065 		JBrowse link
G VPS51 VPS51 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chr11:60,452,483...60,474,049
Ensembl chr11:63,791,519...63,812,340 		JBrowse link
G VPS52 VPS52 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chr 6:32,822,394...32,844,120
Ensembl chr 6:33,936,683...33,958,404 		JBrowse link
G VPS54 VPS54 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25799061) MGI
Ensembl		 PMID:25799061 GO_REF:0000107 NCBI chr2A:63,959,930...64,087,102
Ensembl chr2A:65,086,374...65,176,634 		JBrowse link
mitochondrion to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,583,330...19,601,248
Ensembl chr 1:20,627,693...20,645,560 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:159,293,016...160,679,106
Ensembl chr 6:164,314,990...165,678,770 		JBrowse link
G VPS35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:26,924,901...26,954,443
Ensembl chr16:45,817,371...45,846,531 		JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100970314 charged multivesicular body protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:86,559,695...86,619,615
Ensembl chr2A:88,106,242...88,165,104 		JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNPTAB N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:99,328,026...99,418,151
Ensembl chr12:102,729,615...102,816,560 		JBrowse link
negative regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:26,924,901...26,954,443
Ensembl chr16:45,817,371...45,846,531 		JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:1,110,419...1,161,826
Ensembl chr19:2,085,540...2,137,593 		JBrowse link
G CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:17,475,693...17,618,299
Ensembl chr22:35,317,121...35,454,850 		JBrowse link
positive regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:21421027 RGD:9684860 NCBI chr 1:203,484,803...203,501,395
Ensembl chr 1:208,695,615...208,712,105 		JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2679144|PMID:14557411) MGI
Ensembl		 PMID:14557411 GO_REF:0000107 MGI:2679144 NCBI chr 5:37,015,518...37,305,769
Ensembl chr 5:37,503,162...37,840,205 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,137,085...92,142,756
Ensembl chr 7:105,570,205...105,575,971 		JBrowse link
G GCC2 GRIP and coiled-coil domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:94,659,117...94,721,491
Ensembl chr2A:109,682,552...109,734,682 		JBrowse link
G GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:69,185,045...69,208,766
Ensembl chr17:74,737,164...74,762,039 		JBrowse link
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:76,143,212...76,161,469
Ensembl chr17:81,844,379...81,862,335 		JBrowse link
G LAPTM5 lysosomal protein transmembrane 5 involved_in ISO (MGI:3803048|PMID:18619870) ARUK-UCL PMID:18619870 MGI:3803048 NCBI chr 1:30,005,941...30,031,366
Ensembl chr 1:31,032,963...31,058,385 		JBrowse link
G LHCGR luteinizing hormone/choriogonadotropin receptor ISO chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chr2A:48,808,822...48,879,021
Ensembl chr2A:49,729,002...49,798,780 		JBrowse link
G LOC100968477 VPS53 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:400,048...576,119
Ensembl chr17:414,782...604,705 		JBrowse link
G M6PR mannose-6-phosphate receptor, cation dependent involved_in IEA InterPro GO_REF:0000002 NCBI chr12:9,025,394...9,034,768
Ensembl chr12:9,256,706...9,266,428 		JBrowse link
G NCOA4 nuclear receptor coactivator 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25327288) MGI
Ensembl		 PMID:25327288 GO_REF:0000107 NCBI chr10:43,159,014...43,184,558
Ensembl chr10:46,420,952...46,443,223 		JBrowse link
G NDP norrin cystine knot growth factor NDP acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5921629|PMID:28675177) MGI
Ensembl		 PMID:28675177 GO_REF:0000107 MGI:5921629 NCBI chr  X:36,399,868...36,424,953
Ensembl chr  X:44,224,161...44,249,067 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:17116753) ARUK-UCL PMID:17116753 NCBI chr15:34,798,880...34,963,823
Ensembl chr15:53,118,411...53,283,076 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in ISO (PMID:22115783) BHF-UCL PMID:22115783 NCBI chr 3:125,784,604...125,873,051 JBrowse link
G SCARB2 scavenger receptor class B member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:47,992,589...48,047,528
Ensembl chr 4:53,830,488...53,886,059 		JBrowse link
G SNX16 sorting nexin 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:78,324,407...78,367,143
Ensembl chr 8:79,944,729...79,987,430 		JBrowse link
G SORL1 sortilin related receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:116,297,014...116,477,399
Ensembl chr11:120,222,491...120,402,432 		JBrowse link
G SORT1 sortilin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4368056|PMID:19732768) MGI
Ensembl		 PMID:19732768 GO_REF:0000107 MGI:4368056 NCBI chr 1:111,687,119...111,775,339 JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:49,685,827...49,699,542
Ensembl chr16:69,074,091...69,085,714 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:63,959,930...64,087,102
Ensembl chr2A:65,086,374...65,176,634 		JBrowse link
G ZFYVE16 zinc finger FYVE-type containing 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:34,837,410...34,910,416
Ensembl chr 5:35,111,723...35,183,028 		JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLU clusterin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:26,867,973...26,884,838
Ensembl chr 8:24,070,053...24,083,523 		JBrowse link
G HSPA8 heat shock protein family A (Hsp70) member 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:117,890,545...117,895,262
Ensembl chr11:121,809,800...121,815,773 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 PMID:18644871 MGI
Ensembl		 PMID:18644871 GO_REF:0000107 RGD:10412301 NCBI chr  X:109,700,185...109,743,579
Ensembl chr  X:119,886,982...119,929,896 		JBrowse link
protein targeting to vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MON1A MON1 homolog A, secretory trafficking associated involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 3:49,840,824...49,862,101
Ensembl chr 3:51,077,398...51,099,498 		JBrowse link
G MON1B MON1 homolog B, secretory trafficking associated involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr16:57,765,901...57,774,639
Ensembl chr16:77,112,238...77,120,937 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:39,355,578...39,543,281
Ensembl chr 7:39,590,587...39,776,937 		JBrowse link
G VPS54 VPS54 subunit of GARP complex involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:63,959,930...64,087,102
Ensembl chr2A:65,086,374...65,176,634 		JBrowse link
G VPS8 VPS8 subunit of CORVET complex involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:181,850,827...182,089,846
Ensembl chr 3:190,329,567...190,567,700 		JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGM immunity related GTPase M involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:146,274,097...146,329,979
Ensembl chr 5:152,278,581...152,308,182 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:90,995,923...91,112,240
Ensembl chr 7:104,500,965...104,568,046 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:174,960,727...174,989,946
Ensembl chr 5:182,284,436...182,299,093 		JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS28 VPS28 subunit of ESCRT-I involved_in IEA UniProt GO_REF:0000104 NCBI chr 8:141,189,967...141,195,482
Ensembl chr 8:144,180,081...144,185,175 		JBrowse link
G VPS36 vacuolar protein sorting 36 homolog involved_in IEA UniProt GO_REF:0000104 NCBI chr13:33,398,165...33,436,615
Ensembl chr13:52,336,484...52,372,851 		JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VAMP7 vesicle associated membrane protein 7 acts_upstream_of_or_within ISO (MGI:3774712|PMID:18227281) MGI PMID:18227281 MGI:3774712 NCBI chr  X:145,362,432...145,425,097
Ensembl chr  X:155,257,185...155,320,215 		JBrowse link
zinc ion import into lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC30A2 solute carrier family 30 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:25,296,643...25,304,751
Ensembl chr 1:26,359,575...26,370,803 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15348
    localization 4837
      cellular localization 3087
        intracellular transport 1336
          vacuolar transport 127
            Golgi to vacuole transport + 14
            endocytosed protein transport to vacuole 0
            late endosome to vacuole transport + 5
            lysosomal transport + 112
            negative regulation of vacuolar transport + 1
            plastid to vacuole vesicle-mediated transport 0
            positive regulation of vacuolar transport + 1
            protein targeting to vacuole + 32
            regulation of vacuolar transport + 3
            retrograde transport, vacuole to Golgi 0
Path 2
Term Annotations click to browse term
  biological_process 15348
    cellular process 14054
      cellular localization 3087
        establishment of localization in cell 1911
          intracellular transport 1336
            vacuolar transport 127
              Golgi to vacuole transport + 14
              endocytosed protein transport to vacuole 0
              late endosome to vacuole transport + 5
              lysosomal transport + 112
              negative regulation of vacuolar transport + 1
              plastid to vacuole vesicle-mediated transport 0
              positive regulation of vacuolar transport + 1
              protein targeting to vacuole + 32
              regulation of vacuolar transport + 3
              retrograde transport, vacuole to Golgi 0
paths to the root