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ONTOLOGY REPORT - ANNOTATIONS


Term:vacuolar transport
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Accession:GO:0007034 term browser browse the term
Definition:The directed movement of substances into, out of or within a vacuole.



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vacuolar transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6v0d1 ATPase H+ transporting V0 subunit D1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:33,403,352...33,447,357
Ensembl chr19:33,403,355...33,447,450
JBrowse link
G Atp6v0d2 ATPase H+ transporting V0 subunit D2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:33,336,257...33,385,354
Ensembl chr 5:33,336,264...33,385,354
JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:30,265,808...30,316,068
Ensembl chr18:30,250,613...30,322,311
JBrowse link
G Ndfip2 Nedd4 family interacting protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:82,032,366...82,087,043
Ensembl chr15:82,032,366...82,086,317
JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:106,888,284...106,913,139
Ensembl chr 6:106,888,284...106,913,117
JBrowse link
endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07026291.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G AABR07037545.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Aktip AKT interacting protein involved_in ISO
ISS
(PMID:18799622)
GO_REF:0000024
RGD
UniProt
PMID:18799622 GO_REF:0000024 NCBI chr19:15,866,811...15,877,123
Ensembl chr19:15,866,928...15,886,663
JBrowse link
G Atg14 autophagy related 14 acts_upstream_of_or_within ISO UniProtKB:O95295 (PMID:22797916) RGD PMID:22797916 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Becn2 beclin 2 involved_in
acts_upstream_of_or_within
ISO (PMID:23954414)
(MGI:5528919|PMID:23954414)
RGD PMID:23954414 MGI:5528919 NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787
JBrowse link
G Bin1 bridging integrator 1 involved_in ISO
IEA
(PMID:27179792)
GO_REF:0000107
RGD
Ensembl
PMID:27179792 GO_REF:0000107 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263
JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO (MGI:4457791|PMID:20551175) RGD PMID:20551175 MGI:4457791 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Chmp3 charged multivesicular body protein 3 IMP RGD PMID:18076377 RGD:4892661 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
G Chmp5 charged multivesicular body protein 5 acts_upstream_of_or_within ISO MGI:3626293 (MGI:3622513|PMID:16567502) RGD PMID:16567502 MGI:3622513 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529
JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578
JBrowse link
G Dennd3 DENN domain containing 3 involved_in ISO (MGI:5448516|PMID:21718402) RGD PMID:21718402 MGI:5448516 NCBI chr 7:105,415,870...105,473,583
Ensembl chr 7:105,415,677...105,473,592
JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in ISO (PMID:24790097) RGD PMID:24790097 NCBI chr11:64,814,926...64,824,538
Ensembl chr11:64,814,926...64,824,538
JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog involved_in ISO (PMID:29130391) RGD PMID:29130391 NCBI chr18:71,403,990...71,502,079
Ensembl chr18:71,404,010...71,501,502
JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:18799622)
UniProt
RGD
PMID:18799622 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:159,718,679...159,748,449
Ensembl chr 1:159,726,004...159,748,408
JBrowse link
G Gprasp1 G protein-coupled receptor associated sorting protein 1 involved_in ISO
IEA
ISS
(PMID:23954414)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23954414 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:98,765,581...98,772,685
Ensembl chr  X:98,709,841...98,772,851
JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate IMP RGD PMID:19808888 RGD:4892648 NCBI chr10:105,739,617...105,757,838
Ensembl chr10:105,739,296...105,757,835
JBrowse link
G Hook1 hook microtubule-tethering protein 1 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:110,824,501...110,887,791
Ensembl chr 5:110,824,501...110,887,787
JBrowse link
G Hook2 hook microtubule-tethering protein 2 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:23,151,869...23,170,139
Ensembl chr19:23,151,870...23,164,181
JBrowse link
G Hook3 hook microtubule-tethering protein 3 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:65,954,293...66,058,812
Ensembl chr16:65,954,350...66,061,338
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:17,766,597...17,948,517
Ensembl chr17:17,766,597...17,943,615
JBrowse link
G Mgrn1 mahogunin ring finger 1 involved_in ISO
IEA
IBA
(PMID:17229889)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:17229889 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:10,638,881...10,688,332
Ensembl chr10:10,638,880...10,688,315
JBrowse link
G Mtm1 myotubularin 1 involved_in ISO
IEA
ISS
(PMID:14722070)
GO_REF:0000002
GO_REF:0000024
GO_REF:0000107
RGD
InterPro
UniProt
Ensembl
PMID:14722070 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860
JBrowse link
G Pcdhga3 protocadherin gamma subfamily A, 3 acts_upstream_of_or_within ISO (MGI:5317350|PMID:21917590) RGD PMID:21917590 MGI:5317350 NCBI chr18:29,499,148...29,667,865
Ensembl chr18:29,493,954...29,667,868
JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(MGI:5448516|PMID:21718402)
UniProt
RGD
PMID:21718402 GO_REF:0000024 MGI:5448516 NCBI chr 9:106,480,301...106,506,895
Ensembl chr 9:106,480,301...106,506,910
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IBA
(PMID:18272684)
PMID:21873635
RGD PMID:18272684 PMID:21873635 RGD:13792537 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rab7b Rab7b, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:43,121,168...43,147,581
Ensembl chr13:43,121,226...43,147,581
JBrowse link
G Rhob ras homolog family member B involved_in ISO
ISS
(PMID:10508588)
GO_REF:0000024
RGD
UniProt
PMID:10508588 GO_REF:0000024 NCBI chr 6:31,363,752...31,365,926
Ensembl chr 6:31,363,548...31,366,108
JBrowse link
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:18272684) RGD PMID:18272684 NCBI chr10:60,355,276...60,358,434
Ensembl chr10:60,355,278...60,358,781
JBrowse link
G Rnf157 ring finger protein 157 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,571,972...101,639,874
Ensembl chr10:101,566,295...101,639,942
JBrowse link
G Scyl2 SCY1 like pseudokinase 2 involved_in ISO (PMID:19643732) RGD PMID:19643732 NCBI chr 7:24,064,404...24,117,338
Ensembl chr 7:24,064,404...24,117,305
JBrowse link
G Snapin SNAP-associated protein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
UniProtKB:Q6ZNE5 (PMID:22797916)
RGD PMID:22797916 PMID:21873635 RGD:13792537 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
JBrowse link
G Snx16 sorting nexin 16 involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000107
GO_REF:0000024
(PMID:12813048)
Ensembl
UniProt
RGD
PMID:12813048 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:91,335,896...91,357,622
Ensembl chr 2:91,336,092...91,357,619
JBrowse link
G Snx27 sorting nexin 27 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:182,135,904...182,218,906
Ensembl chr 2:182,135,905...182,218,906
JBrowse link
G Sort1 sortilin 1 involved_in ISO (PMID:11331584) RGD PMID:11331584 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354
JBrowse link
G Stx7 syntaxin 7 IDA RGD PMID:15133481 RGD:4892614 NCBI chr 1:21,197,075...21,237,320
Ensembl chr 1:21,197,075...21,237,279
JBrowse link
G Stx8 syntaxin 8 IDA RGD PMID:15133481 RGD:4892614 NCBI chr10:52,655,643...52,900,048
Ensembl chr10:52,654,990...52,894,993
JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 involved_in ISO (PMID:25266290) RGD PMID:25266290 NCBI chr 9:45,320,930...45,371,329
Ensembl chr 9:45,320,930...45,371,311
JBrowse link
G Trak1 trafficking kinesin protein 1 involved_in ISO
IBA
(PMID:18675823)
PMID:21873635
RGD PMID:18675823 PMID:21873635 RGD:13792537 NCBI chr 8:120,984,445...121,139,357
Ensembl chr 8:120,984,431...121,139,367
JBrowse link
G Trak2 trafficking kinesin protein 2 IDA RGD PMID:17062640 RGD:13208835 NCBI chr 9:60,348,531...60,414,036
Ensembl chr 9:60,350,012...60,413,996
JBrowse link
G Tsg101 tumor susceptibility 101 IMP RGD PMID:19808888 RGD:4892648 NCBI chr 1:97,412,689...97,442,589
Ensembl chr 1:97,410,848...97,442,554
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in IDA
IBA
ISO
PMID:21873635
(PMID:10888671)
PMID:15133481
RGD PMID:10888671 PMID:15133481 PMID:21873635 PMID:15133481 RGD:4892614, RGD:13792537, RGD:4892614 NCBI chr12:16,728,477...16,764,261
Ensembl chr12:16,728,524...16,764,097
JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in
NOT|involved_in
ISO
IEA
(PMID:19109425)
GO_REF:0000107
(PMID:25783203)
RGD
Ensembl
PMID:19109425 PMID:25783203 GO_REF:0000107 NCBI chr 6:106,888,284...106,913,139
Ensembl chr 6:106,888,284...106,913,117
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 8:44,683,768...44,698,572
Ensembl chr 8:44,684,127...44,698,568
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:117,622,534...117,644,041
Ensembl chr 3:117,622,542...117,646,441
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in ISO
IBA
(PMID:25783203)
PMID:21873635
RGD PMID:25783203 PMID:21873635 RGD:13792537 NCBI chr 3:106,279,444...106,290,298
Ensembl chr 3:106,279,425...106,291,964
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:25266290), (PMID:25783203) RGD PMID:25266290 PMID:25783203 NCBI chr 3:107,266,846...107,304,884
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr17:46,063,124...46,227,582
Ensembl chr17:46,063,124...46,227,791
JBrowse link
endosome to lysosome transport of low-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor like GTPase 8B involved_in ISS
ISO
GO_REF:0000024
(PMID:21802320)
UniProt
RGD
PMID:21802320 GO_REF:0000024 NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596
JBrowse link
G Tpcn2 two pore segment channel 2 involved_in ISO
IEA
(MGI:5691857|PMID:25144390)
GO_REF:0000107
RGD
Ensembl
PMID:25144390 GO_REF:0000107 MGI:5691857 NCBI chr 1:200,416,538...200,446,252
Ensembl chr 1:200,416,540...200,446,236
JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028902.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Lyst lysosomal trafficking regulator involved_in ISO (PMID:9606205) RGD PMID:9606205 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Mvb12a multivesicular body subunit 12A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,252,227...18,257,111
Ensembl chr16:18,252,222...18,257,539
JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:21822278) RGD PMID:21822278 NCBI chr 9:900,883...906,047
Ensembl chr 9:900,884...906,124
JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO
GO_REF:0000024
(PMID:21822278)
UniProt
RGD
PMID:21822278 GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:15024011) RGD PMID:15024011 NCBI chr13:22,907,105...22,932,200
Ensembl chr13:22,907,109...22,932,229
JBrowse link
Golgi to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 involved_in ISO (PMID:22284051) RGD PMID:22284051 NCBI chr10:57,312,246...57,383,964
Ensembl chr10:57,312,246...57,383,964
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:23632890) RGD PMID:23632890 NCBI chr19:37,744,666...37,831,131
Ensembl chr19:37,744,633...37,829,167
JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:11139587)
UniProt
RGD
PMID:11139587 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026
JBrowse link
G Ccdc91 coiled-coil domain containing 91 involved_in IBA
ISO
ISS
PMID:21873635
(PMID:17596511)
GO_REF:0000024
RGD
UniProt
PMID:17596511 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:180,402,327...180,574,364
Ensembl chr 4:180,402,376...180,574,364
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:18817525) RGD PMID:18817525 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link
G Ehd3 EH-domain containing 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:19139087)
Ensembl
RGD
PMID:19139087 GO_REF:0000107 NCBI chr 6:21,640,861...21,665,601
Ensembl chr 6:21,639,290...21,665,236
JBrowse link
G Gak cyclin G associated kinase involved_in ISO
IEA
(PMID:16155256)
GO_REF:0000107
RGD
Ensembl
PMID:16155256 GO_REF:0000107 NCBI chr14:1,089,853...1,164,098
Ensembl chr14:1,089,866...1,216,398
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 involved_in ISO
IEA
(PMID:23632890)
GO_REF:0000107
RGD
Ensembl
PMID:23632890 GO_REF:0000107 NCBI chr16:76,355,982...76,380,700
Ensembl chr16:76,355,984...76,381,883
JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:6478861|PMID:24638062) RGD PMID:24638062 MGI:6478861 NCBI chr 5:143,087,759...143,109,807
Ensembl chr 5:143,087,759...143,109,807
JBrowse link
G Rbsn rabenosyn, RAB effector involved_in ISO (PMID:19139087) RGD PMID:19139087 NCBI chr 4:124,682,228...124,712,578
Ensembl chr 4:124,683,969...124,712,578
JBrowse link
G Sort1 sortilin 1 involved_in ISO
ISS
(PMID:16787399)
GO_REF:0000024
RGD
UniProt
PMID:16787399 GO_REF:0000024 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354
JBrowse link
Golgi to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1g2 adaptor related protein complex 1 subunit gamma 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,571,571...28,579,421
Ensembl chr15:28,571,568...28,589,004
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:39,462,727...39,531,626
Ensembl chr18:39,462,765...39,531,622
JBrowse link
G Ap3s2 adaptor related protein complex 3 subunit sigma 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:133,818,825...133,859,269
Ensembl chr 1:133,818,825...133,859,322
JBrowse link
G Rnf215 ring finger protein 215 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:79,006,659...79,013,091
Ensembl chr14:79,006,688...79,013,091
JBrowse link
G Vps52 VPS52 subunit of GARP complex involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,920,715...4,931,685
Ensembl chr20:4,860,843...4,931,665
JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465
JBrowse link
late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor like GTPase 8B involved_in ISS
ISO
GO_REF:0000024
(MGI:6508507|PMID:25637027)
(PMID:28325809)
UniProt
RGD
PMID:25637027 PMID:28325809 GO_REF:0000024 MGI:6508507 NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596
JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436
JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452
JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:3,338,007...3,364,357
Ensembl chr11:3,337,494...3,385,181
JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO
IEA
(PMID:17984323)
GO_REF:0000107
RGD
Ensembl
PMID:17984323 GO_REF:0000107 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668
JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO
IEA
(PMID:17984323)
GO_REF:0000107
RGD
Ensembl
PMID:17984323 GO_REF:0000107 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529
JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO
IEA
(PMID:17984323)
GO_REF:0000107
RGD
Ensembl
PMID:17984323 GO_REF:0000107 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216
JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412
JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5779453|PMID:26989253)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26989253 GO_REF:0000024 GO_REF:0000107 MGI:5779453 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408
JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (MGI:4879078|PMID:20920792) RGD PMID:20920792 MGI:4879078 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231
JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:23167963) RGD PMID:23167963 NCBI chr 3:107,266,846...107,304,884
Ensembl chr 3:107,267,310...107,304,975
JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in ISO (PMID:23167963) RGD PMID:23167963 NCBI chr17:46,063,124...46,227,582
Ensembl chr17:46,063,124...46,227,791
JBrowse link
late endosome to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
JBrowse link
G Becn2 beclin 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787
JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436
JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452
JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:3,338,007...3,364,357
Ensembl chr11:3,337,494...3,385,181
JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:16856878) RGD PMID:16856878 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:106,267,908...106,316,585
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G RGD1566265 similar to RIKEN cDNA 2610002M06 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:72,860,409...72,901,232
Ensembl chr  X:72,860,409...72,901,246
JBrowse link
late endosome to vacuole transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp4b charged multivesicular body protein 4B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Chmp4bl1 chromatin modifying protein 4B-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:68,049,742...68,050,791
Ensembl chr 4:68,049,705...68,050,676
JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668
JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529
JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640
JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216
JBrowse link
G Leprot leptin receptor overlapping transcript involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:116,289,843...116,301,951
Ensembl chr 5:116,289,822...116,301,988
JBrowse link
G Leprotl1 leptin receptor overlapping transcript-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,040,934...58,053,600
Ensembl chr16:58,040,960...58,053,593
JBrowse link
G Tmem50a transmembrane protein 50A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:147,123,670...147,138,859
Ensembl chr 5:147,123,688...147,138,849
JBrowse link
G Tmem50b transmembrane protein 50B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:30,804,835...30,837,675
Ensembl chr11:30,804,837...30,837,661
JBrowse link
G Vta1 vesicle trafficking 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:9,031,226...9,080,654
Ensembl chr 1:9,032,335...9,080,635
JBrowse link
lysosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07026294.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07053509.2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 3:107,013,265...107,054,324 JBrowse link
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 acts_upstream_of_or_within ISO (PMID:12837691) RGD PMID:12837691 NCBI chr 9:60,613,182...60,686,394
Ensembl chr 9:60,613,167...60,670,737
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:31996848) RGD PMID:31996848 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139
JBrowse link
G Grn granulin precursor involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5920379|PMID:28541286)
(PMID:28541286)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28541286 GO_REF:0000024 GO_REF:0000107 MGI:5920379 NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase involved_in ISO (PMID:20650889) RGD PMID:20650889 NCBI chr16:66,105,233...66,137,444
Ensembl chr16:66,105,181...66,136,138
JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A involved_in ISS
ISO
GO_REF:0000024
(MGI:6274951|PMID:27789271)
UniProt
RGD
PMID:27789271 GO_REF:0000024 MGI:6274951
G Hspa1b heat shock protein family A (Hsp70) member 1B involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,855,104...3,859,148
Ensembl chr20:3,856,006...3,873,240
JBrowse link
G Igf2r insulin-like growth factor 2 receptor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501
JBrowse link
G LOC108348108 heat shock 70 kDa protein 1A involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,870,765...3,873,221 JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in ISO (MGI:5701557|PMID:26370502) RGD PMID:26370502 MGI:5701557 NCBI chr 7:63,380,325...63,461,029
Ensembl chr 7:63,380,356...63,460,910
JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent involved_in ISS
ISO
GO_REF:0000024
(MGI:5701557|PMID:26370502)
UniProt
RGD
PMID:26370502 GO_REF:0000024 MGI:5701557 NCBI chr 4:155,501,080...155,510,219
Ensembl chr 4:155,500,921...155,510,216
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:18544533) RGD PMID:18544533 NCBI chr 8:73,384,095...73,468,951
Ensembl chr 8:73,383,695...73,468,951
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:17452316) RGD PMID:17452316 NCBI chr 5:121,211,278...121,233,688
Ensembl chr 5:121,211,278...121,233,688
JBrowse link
G Psap prosaposin involved_in ISO
IEA
ISS
(PMID:26370502), (PMID:28541286), (PMID:28835281)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26370502 PMID:28541286 PMID:28835281 GO_REF:0000024 GO_REF:0000107 NCBI chr20:28,214,229...28,240,501
Ensembl chr20:28,214,271...28,240,498
JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISO (MGI:5467668|PMID:23197834) RGD PMID:23197834 MGI:5467668 NCBI chr10:63,083,319...63,087,538
Ensembl chr10:63,083,338...63,087,538
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23704327)
GO_REF:0000107
RGD
Ensembl
PMID:23704327 GO_REF:0000107 NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324
JBrowse link
G Tmem106b transmembrane protein 106B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5588048|PMID:25066864)
RGD PMID:25066864 PMID:21873635 MGI:5588048, RGD:13792537 NCBI chr 4:41,328,125...41,347,315
Ensembl chr 4:41,327,994...41,345,619
JBrowse link
G Vps51 VPS51 subunit of GARP complex involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:25799061)
RGD PMID:25799061 PMID:21873635 RGD:13792537 NCBI chr 1:203,360,434...203,370,295
Ensembl chr 1:203,360,440...203,370,430
JBrowse link
G Vps52 VPS52 subunit of GARP complex involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:25799061)
RGD PMID:25799061 PMID:21873635 RGD:13792537 NCBI chr20:4,920,715...4,931,685
Ensembl chr20:4,860,843...4,931,665
JBrowse link
G Vps53 VPS53 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:25799061) RGD PMID:25799061 NCBI chr10:60,919,820...61,038,674
Ensembl chr10:60,919,820...61,038,676
JBrowse link
G Vps54 VPS54 subunit of GARP complex acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25799061)
GO_REF:0000107
RGD
Ensembl
PMID:25799061 GO_REF:0000107 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857
JBrowse link
mitochondrion to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:24446486) RGD PMID:24446486 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:24446486) RGD PMID:24446486 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:26618722) RGD PMID:26618722 NCBI chr19:21,765,771...21,801,620
Ensembl chr19:21,765,749...21,801,618
JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959
JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in ISO
IBA
(PMID:19938078), (PMID:25505245)
PMID:21873635
RGD PMID:19938078 PMID:25505245 PMID:21873635 RGD:13792537 NCBI chr 7:22,800,502...22,866,336
Ensembl chr 7:22,800,485...22,866,933
JBrowse link
negative regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:23563491) RGD PMID:23563491 NCBI chr19:21,765,771...21,801,620
Ensembl chr19:21,765,749...21,801,618
JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IBA
ISO
PMID:21873635
(MGI:5819335|PMID:24217640)
RGD PMID:24217640 PMID:21873635 MGI:5819335, RGD:13792537 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 involved_in IBA
ISO
PMID:21873635
(MGI:5819335|PMID:24217640)
RGD PMID:24217640 PMID:21873635 MGI:5819335, RGD:13792537 NCBI chr 7:109,572,838...109,698,516
Ensembl chr 7:109,574,459...109,697,227
JBrowse link
G Cacng3 calcium voltage-gated channel auxiliary subunit gamma 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:177,201,990...177,296,473
Ensembl chr 1:177,201,288...177,297,024
JBrowse link
G Cacng4 calcium voltage-gated channel auxiliary subunit gamma 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:92,686,100...92,745,601
Ensembl chr10:92,683,761...92,746,126
JBrowse link
G Cacng5 calcium voltage-gated channel auxiliary subunit gamma 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:92,827,441...92,869,632
Ensembl chr10:92,829,196...92,869,614
JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:65,800,820...65,831,165
Ensembl chr 1:65,800,355...65,831,006
JBrowse link
G Cacng8 calcium voltage-gated channel auxiliary subunit gamma 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:65,755,334...65,775,567
Ensembl chr 1:65,755,334...65,779,089
JBrowse link
positive regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 IMP RGD PMID:21421027 RGD:9684860 NCBI chr10:43,997,983...44,014,543
Ensembl chr10:43,997,986...44,014,434
JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO MGI:1856989 (MGI:2679144|PMID:14557411) RGD PMID:14557411 MGI:2679144 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:11139587) RGD PMID:11139587 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026
JBrowse link
G Gcc2 GRIP and coiled-coil domain containing 2 involved_in ISO
IEA
ISS
(PMID:16885419)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:16885419 GO_REF:0000024 GO_REF:0000107 NCBI chr20:26,247,394...26,293,613
Ensembl chr20:26,247,404...26,293,613
JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in ISO UniProtKB:P46934 (PMID:17116753) RGD PMID:17116753 NCBI chr10:100,825,426...100,844,462
Ensembl chr10:100,825,426...100,844,462
JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate involved_in ISO
IEA
(PMID:18767904)
GO_REF:0000107
RGD
Ensembl
PMID:18767904 GO_REF:0000107 NCBI chr10:105,739,617...105,757,838
Ensembl chr10:105,739,296...105,757,835
JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:3803048|PMID:18619870) RGD PMID:18619870 MGI:3803048 NCBI chr 5:143,087,759...143,109,807
Ensembl chr 5:143,087,759...143,109,807
JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor IMP chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chr 6:5,661,871...5,728,109
Ensembl chr 6:5,661,871...5,724,521
JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,501,080...155,510,219
Ensembl chr 4:155,500,921...155,510,216
JBrowse link
G Ncoa4 nuclear receptor coactivator 4 acts_upstream_of_or_within ISO (PMID:25327288) RGD PMID:25327288 NCBI chr16:7,389,222...7,409,564
Ensembl chr16:7,366,542...7,409,556
Ensembl chr16:7,366,542...7,409,556
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO
IEA
UniProtKB:Q9NZ52 (PMID:17116753)
GO_REF:0000107
RGD
Ensembl
PMID:17116753 GO_REF:0000107 NCBI chr 8:73,384,095...73,468,951
Ensembl chr 8:73,383,695...73,468,951
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Scarb2 scavenger receptor class B, member 2 involved_in IBA
ISO
PMID:21873635
(MGI:3773765|PMID:18022370)
(PMID:18022370)
RGD PMID:18022370 PMID:21873635 MGI:3773765, RGD:13792537 NCBI chr14:15,558,271...15,609,813
Ensembl chr14:15,558,236...15,609,813
JBrowse link
G Snx16 sorting nexin 16 involved_in ISO
IEA
ISS
IBA
(PMID:12813048)
GO_REF:0000107
GO_REF:0000024
PMID:21873635
RGD
Ensembl
UniProt
PMID:12813048 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:91,335,896...91,357,622
Ensembl chr 2:91,336,092...91,357,619
JBrowse link
G Sorl1 sortilin related receptor 1 involved_in ISO (PMID:24523320) RGD PMID:24523320 NCBI chr 8:42,341,704...42,504,435
Ensembl chr 8:42,341,704...42,504,513
JBrowse link
G Sort1 sortilin 1 acts_upstream_of_or_within ISO MGI:4397584 (MGI:4368056|PMID:19732768) RGD PMID:19732768 MGI:4368056 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO (PMID:16973552) RGD PMID:16973552 NCBI chr19:34,934,999...34,948,267
Ensembl chr19:34,934,961...34,948,887
JBrowse link
G Zfyve16 zinc finger FYVE-type containing 16 involved_in ISO
IBA
(PMID:11546807)
PMID:21873635
RGD PMID:11546807 PMID:21873635 RGD:13792537 NCBI chr 2:23,713,018...23,757,576
Ensembl chr 2:23,713,766...23,756,990
JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011951.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:164,044,261...164,046,336 JBrowse link
G AABR07033324.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:17,466,782...17,468,721 JBrowse link
G AABR07048992.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:155,934,794...155,936,910 JBrowse link
G Clu clusterin involved_in ISO
IEA
(PMID:9228033)
GO_REF:0000107
RGD
Ensembl
PMID:9228033 GO_REF:0000107 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:164,044,226...164,046,344
Ensembl chr 2:164,044,261...164,046,336
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IBA
ISO
PMID:21873635
(PMID:26212789)
RGD PMID:26212789 PMID:21873635 RGD:13792537 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in
acts_upstream_of_or_within
ISO
IBA
IGI
IMP
ISS
(PMID:27628032)
PMID:21873635
PMID:18644871
(MGI:5805578|PMID:27628032)
GO_REF:0000024
RGD
UniProt
PMID:27628032 PMID:21873635 PMID:18644871 PMID:18644871 PMID:21873635 GO_REF:0000024 MGI:5805578, RGD:13792537, RGD:10412301, RGD:10412301, RGD:13792537 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522
JBrowse link
G LOC680121 similar to heat shock protein 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:5,628,432...5,630,535
Ensembl chr11:5,628,427...5,630,533
JBrowse link
protein targeting to vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006458.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Mon1a MON1 homolog A, secretory trafficking associated involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:108,574,272...108,593,163
Ensembl chr 8:108,574,388...108,593,156
JBrowse link
G Mon1b MON1 homolog B, secretory trafficking associated involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr19:41,617,201...41,625,347
Ensembl chr19:41,617,364...41,625,347
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:106,267,908...106,316,585
Ensembl chr 8:106,267,954...106,316,584
JBrowse link
G Rnf215 ring finger protein 215 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:79,006,659...79,013,091
Ensembl chr14:79,006,688...79,013,091
JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:68,478,366...68,651,893
Ensembl chr 8:68,478,395...68,651,895
JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:156,830,509...157,055,895
Ensembl chr 5:156,830,512...157,055,891
JBrowse link
G Vps37a VPS37A subunit of ESCRT-I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:51,736,170...51,775,384
Ensembl chr16:51,737,481...51,775,390
JBrowse link
G Vps37b VPS37B subunit of ESCRT-I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:32,560,047...32,589,015
Ensembl chr12:32,560,047...32,589,014
JBrowse link
G Vps37c VPS37C subunit of ESCRT-I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:207,336,694...207,362,295
Ensembl chr 1:207,336,731...207,362,289
JBrowse link
G Vps37d VPS37D subunit of ESCRT-I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:21,609,210...21,614,669
Ensembl chr12:21,609,182...21,614,659
JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:46,063,124...46,227,582
Ensembl chr17:46,063,124...46,227,791
JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snf8 SNF8 subunit of ESCRT-II involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:80,984,337...80,996,724
Ensembl chr10:80,984,363...80,996,734
JBrowse link
G Stam signal transducing adaptor molecule involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,120,235...77,166,173
Ensembl chr17:77,120,158...77,166,467
JBrowse link
G Vps25 vacuolar protein sorting 25 homolog involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,196,062...86,201,606
Ensembl chr10:86,188,812...86,231,829
JBrowse link
G Vps28 VPS28 subunit of ESCRT-I involved_in IBA
IEA
PMID:21873635
GO_REF:0000104
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 7:108,341,989...108,345,837
Ensembl chr 7:108,341,989...108,345,837
JBrowse link
G Vps36 vacuolar protein sorting 36 homolog involved_in IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr16:69,810,404...69,834,789
Ensembl chr16:69,808,193...69,834,810
JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vamp7 vesicle-associated membrane protein 7 acts_upstream_of_or_within ISO (MGI:3774712|PMID:18227281) RGD PMID:18227281 MGI:3774712 NCBI chr12:16,728,477...16,764,261
Ensembl chr12:16,728,524...16,764,097
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    localization 6554
      cellular localization 3075
        intracellular transport 1625
          vacuolar transport 162
            Golgi to vacuole transport + 20
            endocytosed protein transport to vacuole 0
            late endosome to vacuole transport + 24
            lysosomal transport + 128
            negative regulation of vacuolar transport + 1
            plastid to vacuole vesicle-mediated transport 0
            positive regulation of vacuolar transport + 1
            protein targeting to vacuole + 41
            regulation of vacuolar transport + 3
            retrograde transport, vacuole to Golgi 0
Path 2
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular localization 3075
        establishment of localization in cell 2295
          intracellular transport 1625
            vacuolar transport 162
              Golgi to vacuole transport + 20
              endocytosed protein transport to vacuole 0
              late endosome to vacuole transport + 24
              lysosomal transport + 128
              negative regulation of vacuolar transport + 1
              plastid to vacuole vesicle-mediated transport 0
              positive regulation of vacuolar transport + 1
              protein targeting to vacuole + 41
              regulation of vacuolar transport + 3
              retrograde transport, vacuole to Golgi 0
paths to the root