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ONTOLOGY REPORT - ANNOTATIONS


Term:peroxisome organization
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Accession:GO:0007031 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.
Synonyms:exact_synonym: peroxisome organisation
 related_synonym: peroxisome organization and biogenesis


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peroxisome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCD1 ATP binding cassette subfamily D member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:128,152,697...128,171,007 JBrowse link
G ABCD2 ATP binding cassette subfamily D member 2 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr11:35,866,928...35,884,503 JBrowse link
G ABCD3 ATP binding cassette subfamily D member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:38,750,147...38,846,011
Ensembl chr20:38,748,787...38,845,989
JBrowse link
G ABCD4 ATP binding cassette subfamily D member 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:51,497,440...51,516,919
Ensembl chr24:51,495,790...51,516,905
JBrowse link
G LOC103224063 peroxisomal membrane protein 11B involved_in IEA UniProt GO_REF:0000043 NCBI chr20:12,835,551...12,854,342
Ensembl chr20:12,827,633...12,835,517
Ensembl chr20:12,827,633...12,835,517
JBrowse link
G LOC103230534 protein transport protein Sec16B involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:51,309,875...51,379,187
Ensembl chr25:51,332,937...51,380,520
JBrowse link
G PEX1 peroxisomal biogenesis factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr21:56,493,424...56,535,565
Ensembl chr21:56,493,435...56,535,154
JBrowse link
G PEX10 peroxisomal biogenesis factor 10 involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 NCBI chr20:129,145,587...129,155,687
Ensembl chr20:129,145,638...129,153,968
JBrowse link
G PEX11A peroxisomal biogenesis factor 11 alpha involved_in IEA Ensembl
UniProt
GO_REF:0000043 GO_REF:0000107 NCBI chr29:8,220,082...8,229,448
Ensembl chr29:8,221,920...8,229,243
JBrowse link
G PEX12 peroxisomal biogenesis factor 12 involved_in ISO (PMID:9354782)
(PMID:17534573)
RGD
UniProt
PMID:9354782 PMID:9632816 PMID:17534573 RGD:729522 NCBI chr16:29,049,206...29,054,718 JBrowse link
G PEX12 peroxisomal biogenesis factor 12 involved_in IEA UniProt GO_REF:0000117 Ensembl chr16:29,050,199...29,052,429 JBrowse link
G PEX14 peroxisomal biogenesis factor 14 NOT|involved_in ISO (PMID:10022913) UniProt
RGD
PMID:10022913 PMID:10212238 RGD:68287 NCBI chr20:121,152,514...121,309,888
Ensembl chr20:121,152,498...121,309,919
JBrowse link
G PEX16 peroxisomal biogenesis factor 16 involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:19,424,155...19,432,430
Ensembl chr 1:19,423,581...19,431,948
JBrowse link
G PEX19 peroxisomal biogenesis factor 19 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:3,663,375...3,672,113
Ensembl chr20:3,663,001...3,669,404
JBrowse link
G PEX2 peroxisomal biogenesis factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:72,513,975...72,532,399
Ensembl chr 8:72,514,307...72,517,003
JBrowse link
G PEX3 peroxisomal biogenesis factor 3 involved_in ISO
IEA
RGD
UniProt
InterPro
PMID:10848631 GO_REF:0000002 GO_REF:0000043 RGD:633588 NCBI chr13:29,753,203...29,792,300
Ensembl chr13:29,751,233...29,792,247
JBrowse link
G PEX5 peroxisomal biogenesis factor 5 acts_upstream_of_or_within ISO (PMID:15732085)
(PMID:9288097)
(PMID:14586000)
MGI PMID:9288097 PMID:14586000 PMID:15732085 NCBI chr11:7,255,078...7,286,500
Ensembl chr11:7,256,182...7,274,938
JBrowse link
G PEX6 peroxisomal biogenesis factor 6 involved_in ISO
IEA
RGD
UniProt
Ensembl
PMID:7493019 GO_REF:0000043 GO_REF:0000107 RGD:729462 NCBI chr17:29,180,427...29,198,747
Ensembl chr17:29,180,460...29,200,398
JBrowse link
G PEX7 peroxisomal biogenesis factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:36,486,636...36,585,662
Ensembl chr13:36,485,513...36,585,736
JBrowse link
G PLAAT1 phospholipase A and acyltransferase 1 acts_upstream_of_or_within ISO (PMID:22134920) MGI PMID:22134920 NCBI chr15:87,317,822...87,353,220 JBrowse link
G PLAAT3 phospholipase A and acyltransferase 3 involved_in ISO (MGI:5427339|PMID:22134920) UniProt PMID:22134920 MGI:5427339 NCBI chr 1:10,632,342...10,660,757 JBrowse link
G TMEM135 transmembrane protein 135 involved_in ISO PMID:17522052 UniProt PMID:17522052 RGD:8554008 NCBI chr 1:78,285,287...78,539,607
Ensembl chr 1:78,285,376...78,541,905
JBrowse link
ER-dependent peroxisome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX16 peroxisomal biogenesis factor 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,424,155...19,432,430
Ensembl chr 1:19,423,581...19,431,948
JBrowse link
ER-dependent peroxisome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX16 peroxisomal biogenesis factor 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,424,155...19,432,430
Ensembl chr 1:19,423,581...19,431,948
JBrowse link
establishment of protein localization to peroxisome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX19 peroxisomal biogenesis factor 19 involved_in ISO (PMID:18782765) UniProt PMID:18782765 NCBI chr20:3,663,375...3,672,113
Ensembl chr20:3,663,001...3,669,404
JBrowse link
G PEX7 peroxisomal biogenesis factor 7 involved_in IEA UniProt GO_REF:0000117 NCBI chr13:36,486,636...36,585,662
Ensembl chr13:36,485,513...36,585,736
JBrowse link
peroxisome fission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACOT8 acyl-CoA thioesterase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:18,026,927...18,043,940
Ensembl chr 2:18,027,016...18,043,823
JBrowse link
G ACOX1 acyl-CoA oxidase 1 involved_in ISO (PMID:20195242) UniProt PMID:20195242 NCBI chr16:45,706,009...45,745,564
Ensembl chr16:45,706,360...45,740,247
JBrowse link
G DNM1L dynamin 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:32,114,642...32,178,330
Ensembl chr11:32,114,675...32,177,661
JBrowse link
G FIS1 fission, mitochondrial 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:11,934,848...11,940,230
Ensembl chr28:11,934,821...11,941,901
JBrowse link
G LOC103224063 peroxisomal membrane protein 11B involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr20:12,835,551...12,854,342
Ensembl chr20:12,827,633...12,835,517
Ensembl chr20:12,827,633...12,835,517
JBrowse link
G LOC103230534 protein transport protein Sec16B involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:51,309,875...51,379,187
Ensembl chr25:51,332,937...51,380,520
JBrowse link
G MFF mitochondrial fission factor involved_in ISO (PMID:18353969), (PMID:21149567) UniProt PMID:18353969 PMID:21149567 NCBI chr10:113,348,330...113,381,875
Ensembl chr10:113,348,446...113,381,162
JBrowse link
G PEX11A peroxisomal biogenesis factor 11 alpha involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr29:8,220,082...8,229,448
Ensembl chr29:8,221,920...8,229,243
JBrowse link
G PEX11G peroxisomal biogenesis factor 11 gamma involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:6,975,467...7,000,937
Ensembl chr 6:6,975,792...6,984,350
JBrowse link
G PEX19 peroxisomal biogenesis factor 19 involved_in ISO (PMID:18782765) UniProt PMID:18782765 NCBI chr20:3,663,375...3,672,113
Ensembl chr20:3,663,001...3,669,404
JBrowse link
peroxisome membrane biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX11A peroxisomal biogenesis factor 11 alpha ISO RGD PMID:9548716 RGD:633614 NCBI chr29:8,220,082...8,229,448
Ensembl chr29:8,221,920...8,229,243
JBrowse link
G PEX16 peroxisomal biogenesis factor 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,424,155...19,432,430
Ensembl chr 1:19,423,581...19,431,948
JBrowse link
G PEX19 peroxisomal biogenesis factor 19 involved_in ISO (PMID:10051604) UniProt PMID:10051604 NCBI chr20:3,663,375...3,672,113
Ensembl chr20:3,663,001...3,669,404
JBrowse link
G PEX3 peroxisomal biogenesis factor 3 ISO RGD PMID:10848631 RGD:633588 NCBI chr13:29,753,203...29,792,300
Ensembl chr13:29,751,233...29,792,247
JBrowse link
protein import into peroxisome matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LONP2 lon peptidase 2, peroxisomal involved_in IEA UniProt GO_REF:0000104 NCBI chr 5:34,050,284...34,160,363
Ensembl chr 5:34,050,446...34,160,165
JBrowse link
G PEX1 peroxisomal biogenesis factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:56,493,424...56,535,565
Ensembl chr21:56,493,435...56,535,154
JBrowse link
G PEX10 peroxisomal biogenesis factor 10 involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr20:129,145,587...129,155,687
Ensembl chr20:129,145,638...129,153,968
JBrowse link
G PEX12 peroxisomal biogenesis factor 12 involved_in ISO (PMID:10562279), (PMID:9090384) UniProt PMID:9090384 PMID:10562279 NCBI chr16:29,049,206...29,054,718 JBrowse link
G PEX12 peroxisomal biogenesis factor 12 involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 Ensembl chr16:29,050,199...29,052,429 JBrowse link
G PEX14 peroxisomal biogenesis factor 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:121,152,514...121,309,888
Ensembl chr20:121,152,498...121,309,919
JBrowse link
G PEX16 peroxisomal biogenesis factor 16 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9922452) MGI
Ensembl
PMID:9922452 GO_REF:0000107 NCBI chr 1:19,424,155...19,432,430
Ensembl chr 1:19,423,581...19,431,948
JBrowse link
G PEX2 peroxisomal biogenesis factor 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:72,513,975...72,532,399
Ensembl chr 8:72,514,307...72,517,003
JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:7,255,078...7,286,500
Ensembl chr11:7,256,182...7,274,938
JBrowse link
G PEX6 peroxisomal biogenesis factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:29,180,427...29,198,747
Ensembl chr17:29,180,460...29,200,398
JBrowse link
G PEX7 peroxisomal biogenesis factor 7 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9090381) MGI
TreeGrafter
Ensembl
InterPro
PMID:9090381 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr13:36,486,636...36,585,662
Ensembl chr13:36,485,513...36,585,736
JBrowse link
G TRIM37 tripartite motif containing 37 acts_upstream_of ISO (PMID:28724525) UniProt PMID:28724525 NCBI chr16:34,310,090...34,446,887
Ensembl chr16:34,310,159...34,436,177
JBrowse link
protein import into peroxisome matrix, docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX13 peroxisomal biogenesis factor 13 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12897163) Ensembl
TreeGrafter
MGI
InterPro
PMID:12897163 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:45,939,181...45,973,049
Ensembl chr14:45,938,940...45,973,125
JBrowse link
G PEX14 peroxisomal biogenesis factor 14 involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr20:121,152,514...121,309,888
Ensembl chr20:121,152,498...121,309,919
JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr11:7,255,078...7,286,500
Ensembl chr11:7,256,182...7,274,938
JBrowse link
G PEX5L peroxisomal biogenesis factor 5 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:9,373,826...9,613,276 JBrowse link
protein import into peroxisome matrix, receptor recycling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX1 peroxisomal biogenesis factor 1 involved_in ISO (PMID:16314507), (PMID:16854980), (PMID:19208625), (PMID:21362118), (PMID:29884772) UniProt PMID:16314507 PMID:16854980 PMID:19208625 PMID:21362118 PMID:29884772 NCBI chr21:56,493,424...56,535,565
Ensembl chr21:56,493,435...56,535,154
JBrowse link
G PEX10 peroxisomal biogenesis factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:129,145,587...129,155,687
Ensembl chr20:129,145,638...129,153,968
JBrowse link
G PEX12 peroxisomal biogenesis factor 12 involved_in ISO (PMID:24662292) UniProt PMID:24662292 NCBI chr16:29,049,206...29,054,718 JBrowse link
G PEX2 peroxisomal biogenesis factor 2 involved_in ISO (PMID:24662292) UniProt PMID:24662292 NCBI chr 8:72,513,975...72,532,399
Ensembl chr 8:72,514,307...72,517,003
JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:7,255,078...7,286,500
Ensembl chr11:7,256,182...7,274,938
JBrowse link
G PEX6 peroxisomal biogenesis factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:29,180,427...29,198,747
Ensembl chr17:29,180,460...29,200,398
JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked involved_in ISO (PMID:22371489) UniProt PMID:22371489 NCBI chr  X:38,255,414...38,402,855
Ensembl chr  X:38,256,008...38,403,323
Ensembl chr  Y:38,256,008...38,403,323
JBrowse link
protein import into peroxisome matrix, substrate release term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX14 peroxisomal biogenesis factor 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:121,152,514...121,309,888
Ensembl chr20:121,152,498...121,309,919
JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:7,255,078...7,286,500
Ensembl chr11:7,256,182...7,274,938
JBrowse link
protein import into peroxisome matrix, translocation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX13 peroxisomal biogenesis factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,939,181...45,973,049
Ensembl chr14:45,938,940...45,973,125
JBrowse link
G PEX14 peroxisomal biogenesis factor 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:121,152,514...121,309,888
Ensembl chr20:121,152,498...121,309,919
JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in ISO (PMID:11336669), (PMID:7719337) UniProt PMID:7719337 PMID:11336669 NCBI chr11:7,255,078...7,286,500
Ensembl chr11:7,256,182...7,274,938
JBrowse link
G PEX6 peroxisomal biogenesis factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:29,180,427...29,198,747
Ensembl chr17:29,180,460...29,200,398
JBrowse link
protein import into peroxisome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PEX16 peroxisomal biogenesis factor 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,424,155...19,432,430
Ensembl chr 1:19,423,581...19,431,948
JBrowse link
G PEX19 peroxisomal biogenesis factor 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:3,663,375...3,672,113
Ensembl chr20:3,663,001...3,669,404
JBrowse link
G PEX3 peroxisomal biogenesis factor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:29,753,203...29,792,300
Ensembl chr13:29,751,233...29,792,247
JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:7,255,078...7,286,500
Ensembl chr11:7,256,182...7,274,938
JBrowse link
G RAB8B RAB8B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:20,275,555...20,354,298
Ensembl chr26:20,275,258...20,354,202
JBrowse link
protein targeting to peroxisome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HACL1 2-hydroxyacyl-CoA lyase 1 involved_in ISO (PMID:10468558) UniProt PMID:10468558 NCBI chr15:60,360,380...60,433,528
Ensembl chr15:60,322,722...60,433,647
JBrowse link
G LONP2 lon peptidase 2, peroxisomal involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:34,050,284...34,160,363
Ensembl chr 5:34,050,446...34,160,165
JBrowse link
G PEX1 peroxisomal biogenesis factor 1 involved_in ISO (PMID:11439091), (PMID:16854980) UniProt PMID:11439091 PMID:16854980 NCBI chr21:56,493,424...56,535,565
Ensembl chr21:56,493,435...56,535,154
JBrowse link
G PEX16 peroxisomal biogenesis factor 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,424,155...19,432,430
Ensembl chr 1:19,423,581...19,431,948
JBrowse link
G PEX19 peroxisomal biogenesis factor 19 involved_in ISO (PMID:16344115), (PMID:16763195)
(PMID:10704444), (PMID:19114594)
UniProt PMID:10704444 PMID:16344115 PMID:16763195 PMID:19114594 NCBI chr20:3,663,375...3,672,113
Ensembl chr20:3,663,001...3,669,404
JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in ISO (PMID:9668159)
(PMID:21375735)
UniProt PMID:9668159 PMID:21375735 NCBI chr11:7,255,078...7,286,500
Ensembl chr11:7,256,182...7,274,938
JBrowse link
G PEX6 peroxisomal biogenesis factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:29,180,427...29,198,747
Ensembl chr17:29,180,460...29,200,398
JBrowse link
G PEX7 peroxisomal biogenesis factor 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12915479) Ensembl
MGI
PMID:12915479 GO_REF:0000107 NCBI chr13:36,486,636...36,585,662
Ensembl chr13:36,485,513...36,585,736
JBrowse link
G ZFAND6 zinc finger AN1-type containing 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:3,274,721...3,356,873
Ensembl chr26:3,274,194...3,314,527
JBrowse link
regulation of peroxisome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNM1L dynamin 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:32,114,642...32,178,330
Ensembl chr11:32,114,675...32,177,661
JBrowse link
G MAVS mitochondrial antiviral signaling protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:34,534,433...34,555,406
Ensembl chr 2:34,541,229...34,552,823
JBrowse link
G PJVK pejvakin involved_in ISO (MGI:5704282|PMID:26544938), (MGI:6294584|PMID:30936319) UniProt PMID:26544938 PMID:30936319 MGI:5704282 MGI:6294584 NCBI chr10:64,004,113...64,013,025
Ensembl chr10:64,005,259...64,014,571
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17080
    cellular process 15997
      cellular component organization or biogenesis 6843
        cellular component organization 6618
          organelle organization 3704
            peroxisome organization 38
              ER-dependent peroxisome organization 1
              glyoxysome organization 0
              peroxisome fission 10
              peroxisome inheritance 0
              peroxisome membrane biogenesis 4
              positive regulation of peroxisome organization 0
              protein localization to peroxisome + 20
              regulation of peroxisome organization + 3
              vesicle fusion with peroxisome 0
paths to the root