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ONTOLOGY REPORT - ANNOTATIONS

Term:endoplasmic reticulum organization
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Accession:GO:0007029 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum.
Synonyms:exact_synonym: ER organisation;   endoplasmic reticulum organisation
 related_synonym: ER organization and biogenesis;   endoplasmic reticulum morphology;   endoplasmic reticulum organization and biogenesis


show annotations for term's descendants           Sort by:
endoplasmic reticulum organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATL1 atlastin GTPase 1 involved_in IDA
IBA
IEA		 (PMID:19665976) UniProt
GO_Central
TreeGrafter		 PMID:19665976 GO_REF:0000033 GO_REF:0000118 NCBI chr14:50,533,082...50,633,068
Ensembl chr14:50,532,509...50,634,017 		JBrowse link
G ATL2 atlastin GTPase 2 involved_in IMP
IEA
IBA		 (PMID:18270207), (PMID:19665976) UniProt
TreeGrafter
GO_Central		 PMID:18270207 PMID:19665976 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:38,293,954...38,378,584
Ensembl chr 2:38,293,954...38,377,285 		JBrowse link
G ATL3 atlastin GTPase 3 involved_in IMP
IBA
IEA		 (PMID:18270207), (PMID:19665976) UniProt
GO_Central
TreeGrafter		 PMID:18270207 PMID:19665976 GO_REF:0000033 GO_REF:0000118 NCBI chr11:63,624,087...63,671,974
Ensembl chr11:63,624,087...63,671,921 		JBrowse link
G BNIP1 BCL2 interacting protein 1 involved_in IMP (PMID:15272311) HGNC-UCL PMID:15272311 NCBI chr 5:173,144,531...173,164,387
Ensembl chr 5:173,144,442...173,164,387 		JBrowse link
G CACNA1S calcium voltage-gated channel subunit alpha1 S involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:5041196) Ensembl
MGI		 PMID:5041196 GO_REF:0000107 NCBI chr 1:201,039,512...201,112,426
Ensembl chr 1:201,039,512...201,112,451 		JBrowse link
G CASQ1 calsequestrin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17627988) Ensembl
MGI		 PMID:17627988 GO_REF:0000107 NCBI chr 1:160,190,575...160,201,886
Ensembl chr 1:160,190,575...160,201,886 		JBrowse link
G CAV2 caveolin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:17200204) Ensembl
MGI
UniProt		 PMID:17200204 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:116,499,738...116,508,541
Ensembl chr 7:116,287,380...116,508,541 		JBrowse link
G CCDC47 coiled-coil domain containing 47 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25009997) Ensembl
MGI		 PMID:25009997 GO_REF:0000107 NCBI chr17:63,745,255...63,773,597
Ensembl chr17:63,745,255...63,776,351 		JBrowse link
G CERT1 ceramide transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19139267) Ensembl
MGI		 PMID:19139267 GO_REF:0000107 NCBI chr 5:75,368,486...75,511,981
Ensembl chr 5:75,356,345...75,512,138 		JBrowse link
G CRYZL2P-SEC16B CRYZL2P-SEC16B readthrough involved_in IDA (PMID:21768384) UniProt PMID:21768384 NCBI chr 1:177,928,788...178,037,976
Ensembl chr 1:177,928,788...178,038,007 		JBrowse link
G DNM1L dynamin 1 like NOT|involved_in IMP (PMID:11514614) ParkinsonsUK-UCL PMID:11514614 NCBI chr12:32,679,301...32,745,650
Ensembl chr12:32,679,200...32,745,650 		JBrowse link
G DOP1A DOP1 leucine zipper like protein A involved_in ISS (PMID:16301316) HGNC-UCL PMID:16301316 NCBI chr 6:83,067,671...83,171,350
Ensembl chr 6:83,067,666...83,171,350 		JBrowse link
G DOP1B DOP1 leucine zipper like protein B involved_in ISS (PMID:16301316) HGNC-UCL PMID:16301316 NCBI chr21:36,156,824...36,294,274
Ensembl chr21:36,156,782...36,294,274 		JBrowse link
G EIF2AK3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:11430819) UniProt
MGI		 PMID:11430819 GO_REF:0000024 NCBI chr 2:88,556,741...88,628,145
Ensembl chr 2:88,556,741...88,691,518 		JBrowse link
G GAK cyclin G associated kinase involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:18434600) ParkinsonsUK-UCL
MGI		 PMID:18434600 GO_REF:0000024 NCBI chr 4:849,277...932,316
Ensembl chr 4:849,276...932,373 		JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (PMID:16256944) MGI PMID:16256944 NCBI chr 4:3,074,681...3,243,960
Ensembl chr 4:3,041,363...3,243,957 		JBrowse link
G JAGN1 jagunal homolog 1 involved_in IEA
IBA		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:9,890,610...9,894,349
Ensembl chr 3:9,890,574...9,894,349 		JBrowse link
G LMAN1 lectin, mannose binding 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21795745) Ensembl
MGI		 PMID:21795745 GO_REF:0000107 NCBI chr18:59,327,823...59,359,265
Ensembl chr18:59,327,823...59,359,265 		JBrowse link
G LNPK lunapark, ER junction formation factor involved_in IMP (PMID:30032983) UniProt PMID:30032983 NCBI chr 2:175,923,882...176,002,820
Ensembl chr 2:175,923,882...176,002,839 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA
IMP		 (PMID:25201882) Ensembl
UniProt		 PMID:25201882 GO_REF:0000107 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in IMP (PMID:21847093) UniProt PMID:21847093 NCBI chr 8:143,716,349...143,722,458
Ensembl chr 8:143,716,340...143,722,458 		JBrowse link
G MIA3 MIA SH3 domain ER export factor 3 involved_in IMP (PMID:28442536) UniProt PMID:28442536 NCBI chr 1:222,618,097...222,668,007
Ensembl chr 1:222,618,097...222,668,007 		JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15732085) Ensembl
MGI		 PMID:15732085 GO_REF:0000107 NCBI chr12:7,188,653...7,218,574
Ensembl chr12:7,188,685...7,218,574 		JBrowse link
G REEP5 receptor accessory protein 5 involved_in ISS FlyBase GO_REF:0000024 NCBI chr 5:112,876,385...112,922,227
Ensembl chr 5:112,876,385...112,922,289 		JBrowse link
G REEP6 receptor accessory protein 6 involved_in ISS FlyBase GO_REF:0000024 NCBI chr19:1,491,181...1,497,927
Ensembl chr19:1,491,166...1,497,927 		JBrowse link
G RETREG1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) Ensembl
MGI		 PMID:34338405 GO_REF:0000107 NCBI chr 5:16,473,053...16,616,997
Ensembl chr 5:16,473,038...16,617,101 		JBrowse link
G RETREG2 reticulophagy regulator family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) Ensembl
MGI		 PMID:34338405 GO_REF:0000107 NCBI chr 2:219,178,275...219,185,475
Ensembl chr 2:219,176,225...219,185,475 		JBrowse link
G RETREG3 reticulophagy regulator family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:34338405) Ensembl
MGI		 PMID:34338405 GO_REF:0000107 NCBI chr17:42,579,508...42,609,427
Ensembl chr17:42,579,513...42,610,623 		JBrowse link
G RNF112 ring finger protein 112 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:19,411,232...19,417,276
Ensembl chr17:19,411,125...19,417,276 		JBrowse link
G RTN4 reticulon 4 involved_in IDA (PMID:27786289) UniProt PMID:27786289 NCBI chr 2:54,972,189...55,137,831
Ensembl chr 2:54,972,187...55,112,621 		JBrowse link
G SEC16A SEC16 homolog A, endoplasmic reticulum export factor involved_in IDA
IEA
IMP		 (PMID:21768384)
(PMID:17428803), (PMID:28442536)		 UniProt
Ensembl		 PMID:17428803 PMID:21768384 PMID:28442536 GO_REF:0000107 NCBI chr 9:136,440,105...136,484,740
Ensembl chr 9:136,440,096...136,483,759 		JBrowse link
G SEC16B SEC16 homolog B, endoplasmic reticulum export factor involved_in IDA (PMID:21768384) UniProt PMID:21768384 NCBI chr 1:177,928,788...177,984,284
Ensembl chr 1:177,923,956...177,984,303 		JBrowse link
G SEC31A SEC31 homolog A, COPII coat complex component involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:82,818,509...82,900,569
Ensembl chr 4:82,818,509...82,901,166 		JBrowse link
G SEC31B SEC31 homolog B, COPII coat complex component involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:100,486,647...100,519,861
Ensembl chr10:100,486,646...100,519,864 		JBrowse link
G SEC61A1 SEC61 translocon subunit alpha 1 acts_upstream_of_or_within IMP (PMID:22375059) MGI PMID:22375059 NCBI chr 3:128,051,641...128,071,683
Ensembl chr 3:128,051,641...128,071,705 		JBrowse link
G SMPD4 sphingomyelin phosphodiesterase 4 involved_in IMP (PMID:31495489) UniProt PMID:31495489 NCBI chr 2:130,151,392...130,181,757
Ensembl chr 2:130,151,392...130,182,750 		JBrowse link
G SPTSSB serine palmitoyltransferase small subunit B involved_in
acts_upstream_of_or_within		 IEA
IBA
ISS		 Ensembl
TreeGrafter
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:161,344,798...161,371,517
Ensembl chr 3:161,344,798...161,372,880 		JBrowse link
G TMCC1 transmembrane and coiled-coil domain family 1 involved_in IMP (PMID:24454821) UniProt PMID:24454821 NCBI chr 3:129,647,792...129,893,711
Ensembl chr 3:129,647,792...129,893,711 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30236446) Ensembl
MGI		 PMID:30236446 GO_REF:0000107 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582 		JBrowse link
G TMEM38A transmembrane protein 38A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17611541) Ensembl
MGI		 PMID:17611541 GO_REF:0000107 NCBI chr19:16,661,139...16,690,023
Ensembl chr19:16,661,139...16,690,023 		JBrowse link
G TMEM38B transmembrane protein 38B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17611541)
(PMID:27188440)		 Ensembl
MGI		 PMID:17611541 PMID:27188440 GO_REF:0000107 NCBI chr 9:105,694,541...105,776,629
Ensembl chr 9:105,694,541...105,776,629 		JBrowse link
G TOR1AIP2 torsin 1A interacting protein 2 involved_in IMP
IEA
IBA		 (PMID:24275647) UniProt
TreeGrafter
GO_Central		 PMID:24275647 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:179,839,976...179,877,803
Ensembl chr 1:179,839,967...179,877,803 		JBrowse link
G TOR1B torsin family 1 member B involved_in IDA (PMID:24275647) UniProt PMID:24275647 NCBI chr 9:129,803,184...129,811,281
Ensembl chr 9:129,803,157...129,811,281 		JBrowse link
G UMOD uromodulin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28437467) Ensembl
MGI		 PMID:28437467 GO_REF:0000107 NCBI chr16:20,333,051...20,356,301
Ensembl chr16:20,333,051...20,356,301 		JBrowse link
G USE1 unconventional SNARE in the ER 1 acts_upstream_of_or_within ISO (PMID:19188447) MGI PMID:19188447 NCBI chr19:17,215,357...17,219,829
Ensembl chr19:17,215,346...17,219,829 		JBrowse link
G VAPA VAMP associated protein A NOT|involved_in IMP (PMID:18713837) UniProt PMID:18713837 NCBI chr18:9,914,016...9,960,021
Ensembl chr18:9,914,016...9,960,021 		JBrowse link
G VAPB VAMP associated protein B and C involved_in IMP (PMID:18713837) UniProt PMID:18713837 NCBI chr20:58,389,229...58,451,101
Ensembl chr20:58,389,229...58,451,101 		JBrowse link
endoplasmic reticulum localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYO5A myosin VA acts_upstream_of_or_within ISO (PMID:10749990)
(PMID:8899740)		 MGI PMID:8899740 PMID:10749990 NCBI chr15:52,307,283...52,529,050
Ensembl chr15:52,307,281...52,529,132 		JBrowse link
G TLE6 TLE family member 6, subcortical maternal complex member involved_in ISS UniProt GO_REF:0000024 NCBI chr19:2,977,401...2,995,179
Ensembl chr19:2,977,538...2,995,179 		JBrowse link
G ZBED3 zinc finger BED-type containing 3 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:77,072,072...77,087,285
Ensembl chr 5:77,072,072...77,087,285 		JBrowse link
endoplasmic reticulum membrane fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP1 BCL2 interacting protein 1 involved_in IMP (PMID:15272311) HGNC-UCL PMID:15272311 NCBI chr 5:173,144,531...173,164,387
Ensembl chr 5:173,144,442...173,164,387 		JBrowse link
G VCPIP1 valosin containing protein interacting protein 1 involved_in ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central
Ensembl		 PMID:12473691 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:1299500 NCBI chr 8:66,628,487...66,667,231
Ensembl chr 8:66,628,487...66,667,231 		JBrowse link
endoplasmic reticulum membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LPCAT3 lysophosphatidylcholine acyltransferase 3 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:6,976,185...7,018,476
Ensembl chr12:6,976,185...7,018,477 		JBrowse link
G REEP5 receptor accessory protein 5 involved_in ISS UniProt GO_REF:0000024 NCBI chr 5:112,876,385...112,922,227
Ensembl chr 5:112,876,385...112,922,289 		JBrowse link
G STEEP1 STING1 ER exit protein 1 involved_in IDA
IBA
IEA		 (PMID:32690950) UniProt
GO_Central
TreeGrafter		 PMID:32690950 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:119,538,149...119,565,409
Ensembl chr  X:119,538,149...119,565,409 		JBrowse link
G STX18 syntaxin 18 involved_in IMP (PMID:19401338) UniProt PMID:19401338 NCBI chr 4:4,418,968...4,542,343
Ensembl chr 4:4,415,742...4,542,346 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28797121) Ensembl
MGI		 PMID:28797121 GO_REF:0000107 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582 		JBrowse link
G TRDN triadin involved_in ISO
ISS		 RGD
BHF-UCL		 PMID:22505613 GO_REF:0000024 RGD:7327226 NCBI chr 6:123,216,339...123,636,950
Ensembl chr 6:123,216,339...123,637,189 		JBrowse link
G VAPB VAMP associated protein B and C involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr20:58,389,229...58,451,101
Ensembl chr20:58,389,229...58,451,101 		JBrowse link
endoplasmic reticulum polarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHTN1 shootin 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:116,881,477...117,126,586
Ensembl chr10:116,881,477...117,126,586 		JBrowse link
endoplasmic reticulum tubular network formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 involved_in IDA (PMID:24262037) UniProt PMID:24262037 NCBI chr16:18,791,667...18,801,549
Ensembl chr16:18,791,669...18,801,572 		JBrowse link
G RTN1 reticulon 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr14:59,595,976...59,870,776
Ensembl chr14:59,595,976...59,870,776 		JBrowse link
G RTN3 reticulon 3 involved_in IEA
IBA
IDA		 (PMID:25612671) Ensembl
GO_Central
UniProt		 PMID:25612671 GO_REF:0000033 GO_REF:0000107 NCBI chr11:63,681,450...63,759,891
Ensembl chr11:63,681,446...63,759,891 		JBrowse link
G RTN4 reticulon 4 involved_in IDA
IEA
IBA		 (PMID:24262037), (PMID:25612671) UniProt
TreeGrafter
GO_Central		 PMID:24262037 PMID:25612671 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:54,972,189...55,137,831
Ensembl chr 2:54,972,187...55,112,621 		JBrowse link
G ZFYVE27 zinc finger FYVE-type containing 27 involved_in IEA
IBA
IMP		 (PMID:23969831), (PMID:24668814) InterPro
GO_Central
TreeGrafter
UniProt		 PMID:23969831 PMID:24668814 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr10:97,737,128...97,760,895
Ensembl chr10:97,737,121...97,760,907 		JBrowse link
endoplasmic reticulum tubular network maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LNPK lunapark, ER junction formation factor involved_in IMP
IEA		 (PMID:25548161), (PMID:27619977) UniProt PMID:25548161 PMID:27619977 GO_REF:0000104 NCBI chr 2:175,923,882...176,002,820
Ensembl chr 2:175,923,882...176,002,839 		JBrowse link
endoplasmic reticulum tubular network membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 involved_in IDA (PMID:24262037) UniProt PMID:24262037 NCBI chr16:18,791,667...18,801,549
Ensembl chr16:18,791,669...18,801,572 		JBrowse link
G ATL1 atlastin GTPase 1 involved_in IMP (PMID:27619977) UniProt PMID:27619977 NCBI chr14:50,533,082...50,633,068
Ensembl chr14:50,532,509...50,634,017 		JBrowse link
G ATL2 atlastin GTPase 2 involved_in IMP (PMID:27619977) UniProt PMID:27619977 NCBI chr 2:38,293,954...38,378,584
Ensembl chr 2:38,293,954...38,377,285 		JBrowse link
G RTN4 reticulon 4 involved_in IMP (PMID:27619977) UniProt PMID:27619977 NCBI chr 2:54,972,189...55,137,831
Ensembl chr 2:54,972,187...55,112,621 		JBrowse link
endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC009163.5 novel TMEM170A-CFDP1 readthrough protein involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr16:75,412,684...75,464,706 JBrowse link
G LNPK lunapark, ER junction formation factor involved_in IEA
IBA		 InterPro
TreeGrafter
GO_Central
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr 2:175,923,882...176,002,820
Ensembl chr 2:175,923,882...176,002,839 		JBrowse link
G RAB10 RAB10, member RAS oncogene family involved_in IMP (PMID:23263280), (PMID:24891604) UniProt PMID:23263280 PMID:24891604 NCBI chr 2:26,033,285...26,137,454
Ensembl chr 2:26,034,084...26,137,454 		JBrowse link
G RAB18 RAB18, member RAS oncogene family involved_in IMP (PMID:24891604) UniProt PMID:24891604 NCBI chr10:27,504,304...27,542,239
Ensembl chr10:27,504,174...27,543,207 		JBrowse link
G REEP1 receptor accessory protein 1 involved_in IMP
IBA		 (PMID:20200447) UniProt
GO_Central		 PMID:20200447 GO_REF:0000033 NCBI chr 2:86,213,993...86,338,083
Ensembl chr 2:86,213,993...86,338,083 		JBrowse link
G REEP2 receptor accessory protein 2 involved_in IMP
IBA		 (PMID:24388663) UniProt
GO_Central		 PMID:24388663 GO_REF:0000033 NCBI chr 5:138,439,057...138,446,965
Ensembl chr 5:138,439,057...138,446,969 		JBrowse link
G REEP3 receptor accessory protein 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:63,521,401...63,625,128
Ensembl chr10:63,521,401...63,625,128 		JBrowse link
G REEP4 receptor accessory protein 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:22,138,020...22,141,907
Ensembl chr 8:22,138,020...22,141,951 		JBrowse link
G RETREG3 reticulophagy regulator family member 3 involved_in IMP (PMID:33826365) UniProt PMID:33826365 NCBI chr17:42,579,508...42,609,427
Ensembl chr17:42,579,513...42,610,623 		JBrowse link
G RTN3 reticulon 3 involved_in IMP (PMID:18779370) UniProt PMID:18779370 NCBI chr11:63,681,450...63,759,891
Ensembl chr11:63,681,446...63,759,891 		JBrowse link
G RTN4 reticulon 4 involved_in IMP (PMID:18779370), (PMID:26906412) UniProt PMID:18779370 PMID:26906412 NCBI chr 2:54,972,189...55,137,831
Ensembl chr 2:54,972,187...55,112,621 		JBrowse link
G TMEM170A transmembrane protein 170A involved_in IMP
IEA
IBA		 (PMID:26906412) UniProt
TreeGrafter
GO_Central		 PMID:26906412 GO_REF:0000033 GO_REF:0000118 NCBI chr16:75,443,054...75,464,737
Ensembl chr16:75,443,054...75,465,497 		JBrowse link
G TMEM33 transmembrane protein 33 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:41,935,137...41,960,803
Ensembl chr 4:41,935,129...41,960,803 		JBrowse link
G USE1 unconventional SNARE in the ER 1 acts_upstream_of_or_within ISO (PMID:19188447) MGI PMID:19188447 NCBI chr19:17,215,357...17,219,829
Ensembl chr19:17,215,346...17,219,829 		JBrowse link
endoplasmic reticulum-plasma membrane tethering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ESYT1 extended synaptotagmin 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:56,128,267...56,144,674
Ensembl chr12:56,118,250...56,144,674 		JBrowse link
G ESYT2 extended synaptotagmin 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:158,730,997...158,829,509
Ensembl chr 7:158,730,995...158,830,253 		JBrowse link
G ESYT3 extended synaptotagmin 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:138,434,616...138,481,686
Ensembl chr 3:138,434,586...138,481,686 		JBrowse link
G GRAMD2A GRAM domain containing 2A involved_in IDA
IEA
IBA		 (PMID:29469807) UniProt
TreeGrafter
GO_Central		 PMID:29469807 GO_REF:0000033 GO_REF:0000118 NCBI chr15:72,159,806...72,197,787
Ensembl chr15:72,159,806...72,197,787 		JBrowse link
G VAPA VAMP associated protein A involved_in IDA (PMID:33124732) UniProt PMID:33124732 NCBI chr18:9,914,016...9,960,021
Ensembl chr18:9,914,016...9,960,021 		JBrowse link
G VAPB VAMP associated protein B and C involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr20:58,389,229...58,451,101
Ensembl chr20:58,389,229...58,451,101 		JBrowse link
establishment of endoplasmic reticulum localization to postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MYO5A myosin VA involved_in ISO (PMID:21151132) SynGO PMID:21151132 NCBI chr15:52,307,283...52,529,050
Ensembl chr15:52,307,281...52,529,132 		JBrowse link
maintenance of ER location term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCOM1 GCOM1, MYZAP-POLR2M combined locus involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:57,591,904...57,717,557
Ensembl chr15:57,591,908...57,714,745 		JBrowse link
G MYZAP myocardial zonula adherens protein involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:57,591,904...57,685,364
Ensembl chr15:57,591,904...57,685,364 		JBrowse link
G POLR2M RNA polymerase II subunit M involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr15:57,706,714...57,717,557
Ensembl chr15:57,706,695...57,782,762 		JBrowse link
multi-pass transmembrane protein insertion into ER membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC47 coiled-coil domain containing 47 involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr17:63,745,255...63,773,597
Ensembl chr17:63,745,255...63,776,351 		JBrowse link
G NCLN nicalin involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr19:3,185,930...3,209,575
Ensembl chr19:3,185,563...3,209,575 		JBrowse link
G NOMO1 NODAL modulator 1 involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr16:14,833,721...14,896,157
Ensembl chr16:14,833,721...14,896,157 		JBrowse link
G NOMO2 NODAL modulator 2 involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr16:18,499,927...18,562,112
Ensembl chr16:18,417,325...18,562,211 		JBrowse link
G NOMO3 NODAL modulator 3 involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr16:16,232,528...16,294,811
Ensembl chr16:16,232,506...16,300,806 		JBrowse link
G RAB5IF RAB5 interacting factor involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr20:36,605,779...36,612,557
Ensembl chr20:36,605,779...36,612,557 		JBrowse link
G TMCO1 transmembrane and coiled-coil domains 1 involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr 1:165,724,291...165,768,922
Ensembl chr 1:165,724,293...165,827,755 		JBrowse link
G TMEM147 transmembrane protein 147 involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr19:35,545,626...35,547,526
Ensembl chr19:35,545,600...35,547,526 		JBrowse link
G WDR83OS WD repeat domain 83 opposite strand involved_in IDA (PMID:36261522) UniProt PMID:36261522 NCBI chr19:12,668,073...12,669,415
Ensembl chr19:12,668,073...12,669,415 		JBrowse link
positive regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATL3 atlastin GTPase 3 involved_in IMP (PMID:27619977) UniProt PMID:27619977 NCBI chr11:63,624,087...63,671,974
Ensembl chr11:63,624,087...63,671,921 		JBrowse link
G LNPK lunapark, ER junction formation factor involved_in IEA
IMP		 (PMID:24223779), (PMID:25404289) UniProt PMID:24223779 PMID:25404289 GO_REF:0000104 NCBI chr 2:175,923,882...176,002,820
Ensembl chr 2:175,923,882...176,002,839 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IMP (PMID:24891604) UniProt PMID:24891604 NCBI chr 2:135,052,292...135,176,396
Ensembl chr 2:135,052,289...135,176,667 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IMP (PMID:24891604) UniProt PMID:24891604 NCBI chr 1:220,148,293...220,272,453
Ensembl chr 1:220,148,293...220,272,529 		JBrowse link
protein insertion into ER membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC010422.5 novel protein involved_in IEA InterPro GO_REF:0000002 Ensembl chr19:12,664,828...12,669,397 JBrowse link
G CAMLG calcium modulating ligand involved_in NAS (PMID:23041287) ComplexPortal PMID:23041287 NCBI chr 5:134,738,548...134,752,157
Ensembl chr 5:134,738,495...134,752,157 		JBrowse link
G CCDC47 coiled-coil domain containing 47 involved_in IDA (PMID:32814900) UniProt PMID:32814900 NCBI chr17:63,745,255...63,773,597
Ensembl chr17:63,745,255...63,776,351 		JBrowse link
G GET1 guided entry of tail-anchored proteins factor 1 involved_in IMP
NAS
IDA		 (PMID:31417168)
(PMID:23041287)
(PMID:32187542)		 UniProt
ComplexPortal		 PMID:23041287 PMID:31417168 PMID:32187542 NCBI chr21:39,380,326...39,428,528
Ensembl chr21:39,377,698...39,428,528 		JBrowse link
G GET3 guided entry of tail-anchored proteins factor 3, ATPase involved_in IEA
NAS		 (PMID:23041287) UniProt
ComplexPortal		 PMID:23041287 GO_REF:0000104 NCBI chr19:12,737,106...12,748,323
Ensembl chr19:12,737,139...12,748,323 		JBrowse link
G GET4 guided entry of tail-anchored proteins factor 4 involved_in IEA
IBA
IMP		 (PMID:32395830) InterPro
GO_Central
TreeGrafter
UniProt		 PMID:32395830 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:876,554...896,436
Ensembl chr 7:876,554...896,436 		JBrowse link
G SEC61A1 SEC61 translocon subunit alpha 1 involved_in IDA (PMID:8616892) UniProt PMID:8616892 NCBI chr 3:128,051,641...128,071,683
Ensembl chr 3:128,051,641...128,071,705 		JBrowse link
G TRAM1 translocation associated membrane protein 1 involved_in IDA
IBA
IEA		 (PMID:8616892) UniProt
GO_Central
TreeGrafter		 PMID:8616892 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:70,573,218...70,608,416
Ensembl chr 8:70,573,218...70,608,416 		JBrowse link
G TRAM1L1 translocation associated membrane protein 1 like 1 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:117,083,554...117,085,576
Ensembl chr 4:117,083,554...117,085,576 		JBrowse link
G TRAM2 translocation associated membrane protein 2 involved_in IDA
IEA
IBA		 (PMID:27499293) UniProt
TreeGrafter
GO_Central		 PMID:27499293 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:52,497,408...52,577,060
Ensembl chr 6:52,497,408...52,577,060 		JBrowse link
G WDR83OS WD repeat domain 83 opposite strand involved_in IEA
IDA		 (PMID:32814900) InterPro
TreeGrafter
UniProt		 PMID:32814900 GO_REF:0000002 GO_REF:0000118 NCBI chr19:12,668,073...12,669,415
Ensembl chr19:12,668,073...12,669,415 		JBrowse link
protein insertion into ER membrane by stop-transfer membrane-anchor sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EMC1 ER membrane protein complex subunit 1 involved_in IDA
IMP		 (PMID:29242231)
(PMID:29809151), (PMID:30415835)		 ComplexPortal
UniProt		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr 1:19,215,660...19,251,524
Ensembl chr 1:19,215,660...19,251,552 		JBrowse link
G EMC10 ER membrane protein complex subunit 10 involved_in IDA
IMP		 (PMID:29242231)
(PMID:29809151), (PMID:30415835)		 ComplexPortal
UniProt		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr19:50,476,507...50,490,871
Ensembl chr19:50,476,400...50,490,871 		JBrowse link
G EMC2 ER membrane protein complex subunit 2 involved_in IMP
IDA		 (PMID:29809151), (PMID:30415835)
(PMID:29242231), (PMID:33964204)		 UniProt PMID:29242231 PMID:29809151 PMID:30415835 PMID:33964204 NCBI chr 8:108,443,624...108,489,196
Ensembl chr 8:108,443,601...108,489,196 		JBrowse link
G EMC3 ER membrane protein complex subunit 3 involved_in IDA
IMP		 (PMID:29242231)
(PMID:29809151), (PMID:30415835)		 ComplexPortal
UniProt		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr 3:9,962,682...10,011,118
Ensembl chr 3:9,962,682...10,011,202 		JBrowse link
G EMC4 ER membrane protein complex subunit 4 involved_in IMP
IDA		 (PMID:29809151), (PMID:30415835)
(PMID:29242231)		 UniProt
ComplexPortal		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr15:34,225,016...34,230,156
Ensembl chr15:34,225,013...34,230,156 		JBrowse link
G EMC6 ER membrane protein complex subunit 6 involved_in IDA
IMP		 (PMID:29242231)
(PMID:29809151), (PMID:30415835)		 ComplexPortal
UniProt		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr17:3,668,812...3,669,665
Ensembl chr17:3,668,812...3,669,668 		JBrowse link
G EMC7 ER membrane protein complex subunit 7 involved_in IMP
IDA		 (PMID:29809151), (PMID:30415835)
(PMID:29242231)		 UniProt
ComplexPortal		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr15:34,084,017...34,101,862
Ensembl chr15:34,084,017...34,101,862 		JBrowse link
G EMC8 ER membrane protein complex subunit 8 involved_in IMP
IDA		 (PMID:29809151), (PMID:30415835)
(PMID:29242231)		 UniProt
ComplexPortal		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr16:85,778,624...85,799,544
Ensembl chr16:85,771,758...85,799,608 		JBrowse link
G EMC9 ER membrane protein complex subunit 9 involved_in IMP
IDA		 (PMID:29809151), (PMID:30415835)
(PMID:29242231)		 UniProt
ComplexPortal		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr14:24,138,965...24,141,591
Ensembl chr14:24,138,959...24,141,591 		JBrowse link
G MMGT1 membrane magnesium transporter 1 involved_in IDA
IMP		 (PMID:29242231)
(PMID:29809151), (PMID:30415835)		 ComplexPortal
UniProt		 PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr  X:135,960,588...135,973,988
Ensembl chr  X:135,960,588...135,974,029 		JBrowse link
G WNK1 WNK lysine deficient protein kinase 1 involved_in IDA (PMID:33964204) UniProt PMID:33964204 NCBI chr12:752,579...911,452
Ensembl chr12:752,579...911,452 		JBrowse link
regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 involved_in IMP (PMID:24262037) CACAO PMID:24262037 NCBI chr16:18,791,667...18,801,549
Ensembl chr16:18,791,669...18,801,572 		JBrowse link
G TMEM33 transmembrane protein 33 involved_in IDA (PMID:25612671) UniProt PMID:25612671 NCBI chr 4:41,935,137...41,960,803
Ensembl chr 4:41,935,129...41,960,803 		JBrowse link
tail-anchored membrane protein insertion into ER membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG6 BAG cochaperone 6 involved_in IDA (PMID:20676083), (PMID:25535373) UniProt PMID:20676083 PMID:25535373 NCBI chr 6:31,639,028...31,652,661
Ensembl chr 6:31,639,028...31,652,705 		JBrowse link
G CAMLG calcium modulating ligand involved_in IDA
IBA
IEA
IMP		 (PMID:27226539)
(PMID:23041287)		 UniProt
GO_Central
TreeGrafter		 PMID:23041287 PMID:27226539 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:134,738,548...134,752,157
Ensembl chr 5:134,738,495...134,752,157 		JBrowse link
G EMC1 ER membrane protein complex subunit 1 involved_in IDA (PMID:29242231) ComplexPortal PMID:29242231 NCBI chr 1:19,215,660...19,251,524
Ensembl chr 1:19,215,660...19,251,552 		JBrowse link
G EMC10 ER membrane protein complex subunit 10 involved_in IDA (PMID:29242231) UniProt PMID:29242231 NCBI chr19:50,476,507...50,490,871
Ensembl chr19:50,476,400...50,490,871 		JBrowse link
G EMC2 ER membrane protein complex subunit 2 involved_in IDA (PMID:29242231) UniProt PMID:29242231 NCBI chr 8:108,443,624...108,489,196
Ensembl chr 8:108,443,601...108,489,196 		JBrowse link
G EMC3 ER membrane protein complex subunit 3 involved_in IDA (PMID:29242231) ComplexPortal PMID:29242231 NCBI chr 3:9,962,682...10,011,118
Ensembl chr 3:9,962,682...10,011,202 		JBrowse link
G EMC4 ER membrane protein complex subunit 4 involved_in IDA (PMID:29242231) UniProt PMID:29242231 NCBI chr15:34,225,016...34,230,156
Ensembl chr15:34,225,013...34,230,156 		JBrowse link
G EMC6 ER membrane protein complex subunit 6 involved_in IDA
IMP		 (PMID:29242231)
(PMID:29242231), (PMID:34918864)		 ComplexPortal
UniProt		 PMID:29242231 PMID:34918864 NCBI chr17:3,668,812...3,669,665
Ensembl chr17:3,668,812...3,669,668 		JBrowse link
G EMC7 ER membrane protein complex subunit 7 involved_in IDA (PMID:29242231) UniProt PMID:29242231 NCBI chr15:34,084,017...34,101,862
Ensembl chr15:34,084,017...34,101,862 		JBrowse link
G EMC8 ER membrane protein complex subunit 8 involved_in IDA (PMID:29242231) ComplexPortal PMID:29242231 NCBI chr16:85,778,624...85,799,544
Ensembl chr16:85,771,758...85,799,608 		JBrowse link
G EMC9 ER membrane protein complex subunit 9 involved_in IDA (PMID:29242231) UniProt PMID:29242231 NCBI chr14:24,138,965...24,141,591
Ensembl chr14:24,138,959...24,141,591 		JBrowse link
G GET1 guided entry of tail-anchored proteins factor 1 involved_in IDA
IBA
IEA
IMP		 (PMID:27226539)
(PMID:23041287)		 UniProt
GO_Central
TreeGrafter
InterPro		 PMID:23041287 PMID:27226539 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr21:39,380,326...39,428,528
Ensembl chr21:39,377,698...39,428,528 		JBrowse link
G GET1-SH3BGR GET1-SH3BGR readthrough involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr21:39,380,326...39,515,504
Ensembl chr21:39,380,332...39,515,506 		JBrowse link
G GET3 guided entry of tail-anchored proteins factor 3, ATPase involved_in IEA
IBA
IMP
IDA		 (PMID:23041287), (PMID:31461301)
(PMID:25535373)		 Ensembl
GO_Central
UniProt		 PMID:23041287 PMID:25535373 PMID:31461301 GO_REF:0000033 GO_REF:0000107 NCBI chr19:12,737,106...12,748,323
Ensembl chr19:12,737,139...12,748,323 		JBrowse link
G GET4 guided entry of tail-anchored proteins factor 4 involved_in IMP
IDA		 (PMID:20676083)
(PMID:25535373)		 UniProt PMID:20676083 PMID:25535373 NCBI chr 7:876,554...896,436
Ensembl chr 7:876,554...896,436 		JBrowse link
G MMGT1 membrane magnesium transporter 1 involved_in IDA
IMP		 (PMID:29242231)
(PMID:29242231), (PMID:34918864)		 ComplexPortal
UniProt		 PMID:29242231 PMID:34918864 NCBI chr  X:135,960,588...135,973,988
Ensembl chr  X:135,960,588...135,974,029 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in IDA (PMID:25535373) UniProt PMID:25535373 NCBI chr19:2,754,715...2,783,273
Ensembl chr19:2,754,715...2,783,362 		JBrowse link
G SLC10A3 solute carrier family 10 member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:154,487,311...154,490,629
Ensembl chr  X:154,487,306...154,490,690 		JBrowse link
G UBL4A ubiquitin like 4A involved_in IDA
IBA
IEA
IMP		 (PMID:25535373)
(PMID:20676083)		 UniProt
GO_Central
TreeGrafter		 PMID:20676083 PMID:25535373 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:154,483,717...154,486,615
Ensembl chr  X:154,483,717...154,486,615 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    cellular process 18460
      cellular component organization or biogenesis 7619
        cellular component organization 7393
          endomembrane system organization 693
            endoplasmic reticulum organization 110
              endoplasmic reticulum cisternal network organization + 0
              endoplasmic reticulum disassembly 0
              endoplasmic reticulum inheritance 0
              endoplasmic reticulum localization + 12
              endoplasmic reticulum membrane fusion 2
              endoplasmic reticulum membrane organization + 13
              endoplasmic reticulum polarization 1
              endoplasmic reticulum tubular network organization + 22
              protein insertion into ER membrane + 34
              vesicle fusion with endoplasmic reticulum + 0
paths to the root