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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum organization
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Accession:GO:0007029 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum.
Synonyms:exact_synonym: ER organisation;   endoplasmic reticulum organisation
 related_synonym: ER organization and biogenesis;   endoplasmic reticulum morphology;   endoplasmic reticulum organization and biogenesis


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endoplasmic reticulum organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atl1 atlastin GTPase 1 involved_in ISO
IBA
ISS
(PMID:19665976)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:19665976, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:92,229,764...92,370,428
Ensembl chr 6:92,229,686...92,370,421
JBrowse link
G Atl2 atlastin GTPase 2 involved_in IBA
ISO
PMID:21873635
(PMID:18270207), (PMID:19665976)
RGD PMID:18270207 PMID:19665976, PMID:21873635 RGD:13792537 NCBI chr 6:2,568,975...2,610,432
Ensembl chr 6:2,568,990...2,610,437
JBrowse link
G Atl3 atlastin GTPase 3 involved_in IEA
ISS
IBA
ISO
GO_REF:0000107
GO_REF:0000024
PMID:21873635
(PMID:18270207), (PMID:19665976)
Ensembl
UniProt
RGD
PMID:18270207 PMID:19665976, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 1:222,746,023...222,788,439
Ensembl chr 1:222,746,023...222,786,942
JBrowse link
G Bnip1 BCL2 interacting protein 1 involved_in ISO
ISS
(PMID:15272311)
GO_REF:0000024
RGD
HGNC-UCL
PMID:15272311 GO_REF:0000024 NCBI chr10:16,677,077...16,689,321
Ensembl chr10:16,677,077...16,689,321
JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO MGI:1856326 (MGI:53761|PMID:5041196) RGD PMID:5041196 MGI:53761 NCBI chr13:52,889,570...52,964,558
Ensembl chr13:52,889,737...52,964,155
JBrowse link
G Casq1 calsequestrin 1 acts_upstream_of_or_within ISO MGI:3530841 (MGI:3814667|PMID:17627988) RGD PMID:17627988 MGI:3814667 NCBI chr13:90,592,676...90,602,365
Ensembl chr13:90,592,681...90,602,365
JBrowse link
G Cav2 caveolin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:2180372 (MGI:3695802|PMID:17200204)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17200204 GO_REF:0000024 GO_REF:0000107 MGI:3695802 NCBI chr 4:44,573,264...44,580,640
Ensembl chr 4:44,573,264...44,580,638
JBrowse link
G Ccdc47 coiled-coil domain containing 47 acts_upstream_of_or_within ISO MGI:3722141 (MGI:5605216|PMID:25009997) RGD PMID:25009997 MGI:5605216 NCBI chr10:94,388,425...94,406,949
Ensembl chr10:94,388,430...94,406,949
JBrowse link
G Cert1 ceramide transporter 1 acts_upstream_of_or_within ISO MGI:3837565 (MGI:3836857|PMID:19139267) RGD PMID:19139267 MGI:3836857 NCBI chr 2:27,365,145...27,469,797
Ensembl chr 2:27,365,148...27,469,779
JBrowse link
G Dnm1l dynamin 1-like NOT|involved_in ISO (PMID:11514614) RGD PMID:11514614 NCBI chr11:88,830,968...88,882,271
Ensembl chr11:88,830,957...88,880,198
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO MGI:2177666 (MGI:2136067|PMID:11430819) RGD PMID:11430819 MGI:2136067 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Gak cyclin G associated kinase acts_upstream_of_or_within ISO MGI:2176228|MGI:5305733 (MGI:5305417|PMID:18434600) RGD PMID:18434600 MGI:5305417 NCBI chr14:2,100,104...2,174,332
Ensembl chr14:2,100,106...2,174,318
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (MGI:3608142|PMID:16256944) RGD PMID:16256944 MGI:3608142 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Jagn1 jagunal homolog 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:145,399,885...145,404,605
Ensembl chr 4:145,399,913...145,404,617
JBrowse link
G Lman1 lectin, mannose-binding, 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:4123879 (MGI:5293569|PMID:21795745)
GO_REF:0000107
RGD
Ensembl
PMID:21795745, PMID:21873635 GO_REF:0000107 MGI:5293569, RGD:13792537 NCBI chr18:61,683,377...61,707,344
Ensembl chr18:61,685,117...61,707,317
JBrowse link
G Lman1l lectin, mannose-binding, 1 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:62,386,806...62,400,370
Ensembl chr 8:62,386,806...62,399,648
JBrowse link
G Lman2 lectin, mannose-binding 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,798,136...9,815,820
Ensembl chr17:9,797,907...9,816,139
JBrowse link
G Lman2l lectin, mannose-binding 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:43,020,940...43,023,015
Ensembl chr 9:42,999,229...43,022,999
JBrowse link
G Lnpk lunapark, ER junction formation factor involved_in ISO (PMID:30032983) RGD PMID:30032983 NCBI chr 3:61,432,128...61,494,828
Ensembl chr 3:61,433,863...61,494,778
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in IBA
ISO
PMID:21873635
(MGI:5608715|PMID:25201882)
(PMID:25201882)
RGD PMID:25201882, PMID:21873635 MGI:5608715, RGD:13792537 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Mapk15 mitogen-activated protein kinase 15 involved_in ISO
IEA
ISS
(PMID:21847093)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21847093 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:117,041,287...117,061,799
Ensembl chr 7:117,055,395...117,061,047
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 involved_in ISO (PMID:28442536) RGD PMID:28442536 NCBI chr13:101,727,434...101,770,127
Ensembl chr13:101,727,935...101,761,541
JBrowse link
G Pex5 peroxisomal biogenesis factor 5 acts_upstream_of_or_within ISO MGI:2176228|MGI:2384516 (MGI:3656427|PMID:15732085) RGD PMID:15732085 MGI:3656427 NCBI chr 4:156,983,914...157,009,675
Ensembl chr 4:156,983,915...157,009,674
Ensembl chr 4:156,983,915...157,009,674
JBrowse link
G Rnf112 ring finger protein 112 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:47,719,034...47,726,050
Ensembl chr10:47,719,014...47,725,172
JBrowse link
G Rtn4 reticulon 4 involved_in ISO (PMID:27786289) RGD PMID:27786289 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO
IBA
(PMID:17428803), (PMID:21768384), (PMID:28442536)
(MGI:6211123|PMID:17428803)
PMID:21873635
RGD PMID:17428803 PMID:21768384 PMID:28442536, PMID:21873635 MGI:6211123, RGD:13792537 NCBI chr 3:3,856,218...3,890,785
Ensembl chr 3:3,856,218...3,890,758
JBrowse link
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor involved_in IBA
ISO
PMID:21873635
(PMID:21768384)
RGD PMID:21768384, PMID:21873635 RGD:13792537 NCBI chr13:75,153,074...75,216,941
Ensembl chr13:75,175,254...75,216,941
JBrowse link
G Sec31a SEC31 homolog A, COPII coat complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:10,854,713...10,909,579
Ensembl chr14:10,854,682...10,909,612
JBrowse link
G Sec31b SEC31 homolog B, COPII coat complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:264,266,279...264,294,687
Ensembl chr 1:264,268,338...264,294,630
JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 acts_upstream_of_or_within ISO (PMID:22375059) RGD PMID:22375059 NCBI chr 4:120,453,577...120,467,932
Ensembl chr 4:120,453,581...120,467,932
JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 involved_in ISO (PMID:31495489) RGD PMID:31495489 NCBI chr11:87,522,971...87,546,687
Ensembl chr11:87,522,971...87,546,687
JBrowse link
G Sptssb serine palmitoyltransferase, small subunit B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5689843 (MGI:5689923|PMID:26438849)
RGD PMID:26438849, PMID:21873635 MGI:5689923, RGD:13792537 NCBI chr 2:166,654,036...166,682,325
Ensembl chr 2:166,654,043...166,682,325
JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 involved_in ISO (PMID:24454821) RGD PMID:24454821 NCBI chr 4:147,920,987...148,048,852
Ensembl chr 4:147,921,724...148,048,726
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:6260081|PMID:30236446) RGD PMID:30236446 MGI:6260081 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Tmem38a transmembrane protein 38a involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1098718 (MGI:3715564|PMID:17611541)
Ensembl
RGD
PMID:17611541 GO_REF:0000107 MGI:3715564 NCBI chr16:18,960,197...18,974,942
Ensembl chr16:18,959,315...18,974,770
JBrowse link
G Tmem38b transmembrane protein 38B acts_upstream_of_or_within ISO MGI:1921416 (MGI:3715564|PMID:17611541), (MGI:6141091|PMID:27188440) RGD PMID:17611541 PMID:27188440 MGI:3715564 MGI:6141091 NCBI chr 5:70,639,156...70,675,055
Ensembl chr 5:70,639,156...70,675,054
JBrowse link
G Tor1aip2 torsin 1A interacting protein 2 involved_in ISO
ISS
IBA
(PMID:24275647)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:24275647, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr13:73,704,088...73,735,339
Ensembl chr13:73,708,815...73,735,339
Ensembl chr13:73,708,815...73,735,339
JBrowse link
G Tor1b torsin family 1, member B involved_in ISO (PMID:24275647) RGD PMID:24275647 NCBI chr 3:9,792,818...9,798,924
Ensembl chr 3:9,792,899...9,798,923
JBrowse link
G Umod uromodulin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5916257|PMID:28437467)
Ensembl
RGD
PMID:28437467 GO_REF:0000107 MGI:5916257 NCBI chr 1:189,186,027...189,199,939
Ensembl chr 1:189,186,026...189,199,376
JBrowse link
G Use1 unconventional SNARE in the ER 1 acts_upstream_of_or_within ISO MGI:2176173|MGI:3842569 (MGI:3842069|PMID:19188447) RGD PMID:19188447 MGI:3842069 NCBI chr16:19,762,202...19,765,781
Ensembl chr16:19,762,938...19,765,782
JBrowse link
G Vapa VAMP associated protein A NOT|involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 9:113,300,831...113,331,872
Ensembl chr 9:113,300,832...113,331,319
JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
endoplasmic reticulum localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856005|MGI:1858520 (MGI:1354789|PMID:10749990), (MGI:83960|PMID:8899740) RGD PMID:8899740 PMID:10749990 MGI:1354789 MGI:83960 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Tle6 TLE family member 6, subcortical maternal complex member involved_in ISO (MGI:6467696|PMID:28992324) RGD PMID:28992324 MGI:6467696 NCBI chr 7:10,964,136...10,988,127
Ensembl chr 7:10,962,330...10,988,137
JBrowse link
G Zbed3 zinc finger, BED-type containing 3 involved_in ISO (MGI:6467696|PMID:28992324) RGD PMID:28992324 MGI:6467696 NCBI chr 2:25,039,506...25,052,129
Ensembl chr 2:25,041,185...25,052,127
JBrowse link
endoplasmic reticulum membrane fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip1 BCL2 interacting protein 1 involved_in ISO
ISS
(PMID:15272311)
GO_REF:0000024
RGD
HGNC-UCL
PMID:15272311 GO_REF:0000024 NCBI chr10:16,677,077...16,689,321
Ensembl chr10:16,677,077...16,689,321
JBrowse link
G Vcpip1 valosin containing protein interacting protein 1 involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12473691, PMID:21873635 RGD:1299500, RGD:13792537 NCBI chr 5:9,231,180...9,257,821
Ensembl chr 5:9,230,984...9,257,934
JBrowse link
endoplasmic reticulum membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpcat3 lysophosphatidylcholine acyltransferase 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5927299|PMID:28846071)
UniProt
RGD
PMID:28846071 GO_REF:0000024 MGI:5927299 NCBI chr 4:157,181,722...157,222,997
Ensembl chr 4:157,181,795...157,222,996
JBrowse link
G Mospd3 motile sperm domain containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,164,978...22,169,251
Ensembl chr12:22,165,486...22,169,241
JBrowse link
G Steep1 STING1 ER exit protein 1 involved_in ISO
IEA
(PMID:32690950)
GO_REF:0000107
RGD
Ensembl
PMID:32690950 GO_REF:0000107 NCBI chr  X:123,460,280...123,486,814
Ensembl chr  X:123,460,280...123,486,814
JBrowse link
G Stx18 syntaxin 18 involved_in ISO (PMID:19401338) RGD PMID:19401338 NCBI chr14:77,402,952...77,492,910
Ensembl chr14:77,402,953...77,492,910
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:5914333|PMID:28797121) RGD PMID:28797121 MGI:5914333 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Trdn triadin IMP RGD PMID:22505613 RGD:7327226 NCBI chr 1:25,403,390...25,787,664
Ensembl chr 1:25,403,390...25,839,345
JBrowse link
G Vapb VAMP associated protein B and C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
endoplasmic reticulum polarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shtn1 shootin 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5505333|PMID:23864681)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23864681 GO_REF:0000024 GO_REF:0000107 MGI:5505333 NCBI chr 1:280,129,228...280,233,873
Ensembl chr 1:280,130,504...280,233,929
JBrowse link
endoplasmic reticulum tubular network formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:187,770,160...187,779,675
Ensembl chr 1:187,770,160...187,779,675
JBrowse link
G Rtn3 reticulon 3 involved_in ISO (PMID:25612671)
(MGI:5770041|PMID:24262037)
RGD PMID:24262037 PMID:25612671 MGI:5770041 NCBI chr 1:222,677,359...222,734,307
Ensembl chr 1:222,677,365...222,734,241
JBrowse link
G Rtn4 reticulon 4 involved_in ISO
ISS
IEA
(PMID:24262037), (PMID:25612671)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:24262037 PMID:25612671 GO_REF:0000024 GO_REF:0000107 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Zfyve27 zinc finger FYVE-type containing 27 involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000002
GO_REF:0000024
(PMID:23969831), (PMID:24668814)
InterPro
UniProt
RGD
PMID:23969831 PMID:24668814, PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 1:261,415,172...261,438,539
Ensembl chr 1:261,415,191...261,438,539
JBrowse link
endoplasmic reticulum tubular network maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lnpk lunapark, ER junction formation factor involved_in ISO (PMID:25548161), (PMID:27619977) RGD PMID:25548161 PMID:27619977 NCBI chr 3:61,432,128...61,494,828
Ensembl chr 3:61,433,863...61,494,778
JBrowse link
endoplasmic reticulum tubular network membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:187,770,160...187,779,675
Ensembl chr 1:187,770,160...187,779,675
JBrowse link
G Atl1 atlastin GTPase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27619977)
UniProt
RGD
PMID:27619977 GO_REF:0000024 NCBI chr 6:92,229,764...92,370,428
Ensembl chr 6:92,229,686...92,370,421
JBrowse link
G Atl2 atlastin GTPase 2 involved_in ISO (PMID:27619977) RGD PMID:27619977 NCBI chr 6:2,568,975...2,610,432
Ensembl chr 6:2,568,990...2,610,437
JBrowse link
G Rtn4 reticulon 4 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:27619977)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27619977 GO_REF:0000024 GO_REF:0000107 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lnpk lunapark, ER junction formation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:61,432,128...61,494,828
Ensembl chr 3:61,433,863...61,494,778
JBrowse link
G Rab10 RAB10, member RAS oncogene family involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:23263280), (PMID:24891604)
UniProt
Ensembl
RGD
PMID:23263280 PMID:24891604 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:27,668,387...27,721,120
Ensembl chr 6:27,668,403...27,721,120
JBrowse link
G Rab18 RAB18, member RAS oncogene family involved_in ISO (PMID:24891604) RGD PMID:24891604 NCBI chr17:59,844,781...59,876,170
Ensembl chr17:59,844,781...59,876,164
JBrowse link
G Reep1 receptor accessory protein 1 involved_in ISO
IBA
(PMID:20200447)
PMID:21873635
RGD PMID:20200447, PMID:21873635 RGD:13792537 NCBI chr 4:99,618,622...99,735,329
Ensembl chr 4:99,618,622...99,735,319
JBrowse link
G Reep2 receptor accessory protein 2 involved_in ISO
IBA
(PMID:24388663)
PMID:21873635
RGD PMID:24388663, PMID:21873635 RGD:13792537 NCBI chr18:27,632,562...27,641,594
Ensembl chr18:27,632,786...27,641,591
JBrowse link
G Reep3 receptor accessory protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:22,887,053...22,998,985
Ensembl chr20:22,913,694...22,999,010
JBrowse link
G Reep4 receptor accessory protein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:52,235,283...52,238,490
Ensembl chr15:52,234,563...52,238,471
JBrowse link
G Rtn3 reticulon 3 involved_in ISO (PMID:18779370) RGD PMID:18779370 NCBI chr 1:222,677,359...222,734,307
Ensembl chr 1:222,677,365...222,734,241
JBrowse link
G Rtn4 reticulon 4 involved_in ISO
ISS
(PMID:18779370), (PMID:26906412)
GO_REF:0000024
RGD
UniProt
PMID:18779370 PMID:26906412 GO_REF:0000024 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Tmem170a transmembrane protein 170A involved_in ISO (PMID:26906412) RGD PMID:26906412 NCBI chr19:44,090,418...44,101,365
Ensembl chr19:44,088,612...44,101,365
JBrowse link
G Tmem33 transmembrane protein 33 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:42,537,352...42,559,580
Ensembl chr14:42,535,701...42,560,174
JBrowse link
G Use1 unconventional SNARE in the ER 1 acts_upstream_of_or_within ISO MGI:3842569|MGI:3842571 (MGI:3842069|PMID:19188447) RGD PMID:19188447 MGI:3842069 NCBI chr16:19,762,202...19,765,781
Ensembl chr16:19,762,938...19,765,782
JBrowse link
endoplasmic reticulum-plasma membrane tethering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esyt1 extended synaptotagmin 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:2,924,216...2,941,213
Ensembl chr 7:2,924,603...2,941,122
JBrowse link
G Esyt2 extended synaptotagmin 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:144,156,021...144,248,374
Ensembl chr 6:144,156,175...144,245,545
JBrowse link
G Esyt3 extended synaptotagmin 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:107,555,417...107,602,414
Ensembl chr 8:107,555,277...107,602,263
JBrowse link
G Gramd2a GRAM domain containing 2A involved_in ISO
IBA
(PMID:29469807)
PMID:21873635
RGD PMID:29469807, PMID:21873635 RGD:13792537 NCBI chr 8:64,503,058...64,539,149
Ensembl chr 8:64,531,594...64,539,367
JBrowse link
G Mospd3 motile sperm domain containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,164,978...22,169,251
Ensembl chr12:22,165,486...22,169,241
JBrowse link
G Vapb VAMP associated protein B and C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
establishment of endoplasmic reticulum localization to postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo5a myosin VA involved_in ISO (MGI:4939562|PMID:21151132) RGD PMID:21151132 MGI:4939562 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
maintenance of ER location term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07043557.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:29,320,701...29,324,203 JBrowse link
G Polr2m RNA polymerase II subunit M involved_in IBA
ISO
PMID:21873635
(MGI:3688366|PMID:14602821)
RGD PMID:14602821, PMID:21873635 MGI:3688366, RGD:13792537 NCBI chr 8:77,985,190...77,992,621
Ensembl chr 8:77,985,190...78,096,390
JBrowse link
positive regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atl3 atlastin GTPase 3 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27619977)
UniProt
Ensembl
RGD
PMID:27619977 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:222,746,023...222,788,439
Ensembl chr 1:222,746,023...222,786,942
JBrowse link
G Lnpk lunapark, ER junction formation factor involved_in ISO (PMID:24223779), (PMID:25404289) RGD PMID:24223779 PMID:25404289 NCBI chr 3:61,432,128...61,494,828
Ensembl chr 3:61,433,863...61,494,778
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA
ISS
(PMID:24891604)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
ParkinsonsUK-UCL
PMID:24891604 GO_REF:0000024 GO_REF:0000107 NCBI chr13:44,578,208...44,649,876
Ensembl chr13:44,615,553...44,648,620
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO
IEA
(PMID:24891604)
GO_REF:0000107
RGD
Ensembl
PMID:24891604 GO_REF:0000107 NCBI chr13:103,157,806...103,229,010
Ensembl chr13:103,157,806...103,228,423
JBrowse link
protein insertion into ER membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc47 coiled-coil domain containing 47 involved_in IEA
ISO
GO_REF:0000107
(PMID:32814900)
Ensembl
RGD
PMID:32814900 GO_REF:0000107 NCBI chr10:94,388,425...94,406,949
Ensembl chr10:94,388,430...94,406,949
JBrowse link
G Get1 guided entry of tail-anchored proteins factor 1 involved_in ISO (PMID:31417168), (PMID:32187542) RGD PMID:31417168 PMID:32187542 NCBI chr11:36,497,513...36,511,445
Ensembl chr11:36,497,509...36,511,535
JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:17,469,112...17,486,709
Ensembl chr12:17,469,112...17,486,157
JBrowse link
G Tram1 translocation associated membrane protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:5,215,196...5,297,337
Ensembl chr 5:5,215,196...5,316,685
JBrowse link
G Tram1l1 translocation associated membrane protein 1-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:228,544,418...228,546,599
Ensembl chr 2:228,544,418...228,546,599
JBrowse link
G Tram2 translocation associated membrane protein 2 involved_in ISO
IBA
(PMID:27499293)
PMID:21873635
RGD PMID:27499293, PMID:21873635 RGD:13792537 NCBI chr 9:27,117,861...27,192,166
Ensembl chr 9:27,117,869...27,192,135
JBrowse link
G Wdr83os WD repeat domain 83 opposite strand involved_in ISO (PMID:32814900) RGD PMID:32814900 NCBI chr19:26,194,336...26,195,837
Ensembl chr19:26,194,465...26,195,837
JBrowse link
protein insertion into ER membrane by stop-transfer membrane-anchor sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emc1 ER membrane protein complex subunit 1 involved_in ISO (PMID:29809151), (PMID:30415835) RGD PMID:29809151 PMID:30415835 NCBI chr 5:157,820,908...157,846,226
Ensembl chr 5:157,820,908...157,846,226
JBrowse link
G Emc10 ER membrane protein complex subunit 10 involved_in ISO
ISS
(PMID:29809151), (PMID:30415835)
GO_REF:0000024
RGD
UniProt
PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr 1:100,495,112...100,501,468
Ensembl chr 1:100,495,119...100,501,437
JBrowse link
G Emc2 ER membrane protein complex subunit 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:29809151), (PMID:30415835)
Ensembl
UniProt
RGD
PMID:29809151 PMID:30415835 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:82,338,639...82,377,389
Ensembl chr 7:82,338,663...82,377,109
JBrowse link
G Emc3 ER membrane protein complex subunit 3 involved_in ISO
ISS
(PMID:29809151), (PMID:30415835)
GO_REF:0000024
RGD
UniProt
PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr 4:145,471,466...145,487,375
Ensembl chr 4:145,471,454...145,487,426
JBrowse link
G Emc4 ER membrane protein complex subunit 4 involved_in ISO (PMID:29809151), (PMID:30415835) RGD PMID:29809151 PMID:30415835 NCBI chr 3:103,852,139...103,857,172
Ensembl chr 3:103,852,139...103,857,158
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO (PMID:29809151), (PMID:30415835) RGD PMID:29809151 PMID:30415835 NCBI chr10:59,741,772...59,743,338
Ensembl chr10:59,741,772...59,743,315
JBrowse link
G Emc7 ER membrane protein complex subunit 7 involved_in ISO (PMID:29809151), (PMID:30415835) RGD PMID:29809151 PMID:30415835 NCBI chr 3:103,945,276...103,955,970
Ensembl chr 3:103,945,329...103,956,007
JBrowse link
G Emc8 ER membrane protein complex subunit 8 involved_in ISS
ISO
GO_REF:0000024
(PMID:29809151), (PMID:30415835)
UniProt
RGD
PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr19:54,235,949...54,245,810
Ensembl chr19:54,235,936...54,245,855
JBrowse link
G Emc9 ER membrane protein complex subunit 9 involved_in ISO
ISS
(PMID:29809151), (PMID:30415835)
GO_REF:0000024
RGD
UniProt
PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr15:34,258,940...34,263,156
Ensembl chr15:34,256,374...34,263,224
JBrowse link
G Mmgt1 membrane magnesium transporter 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:29809151), (PMID:30415835)
UniProt
RGD
PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr  X:158,966,694...158,978,995
Ensembl chr  X:158,966,673...158,978,995
JBrowse link
regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:187,770,160...187,779,675
Ensembl chr 1:187,770,160...187,779,675
JBrowse link
G Tmem33 transmembrane protein 33 involved_in ISO
ISS
IEA
(PMID:25612671)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:25612671 GO_REF:0000024 GO_REF:0000107 NCBI chr14:42,537,352...42,559,580
Ensembl chr14:42,535,701...42,560,174
JBrowse link
tail-anchored membrane protein insertion into ER membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag6 BAG cochaperone 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:20676083), (PMID:25535373)
UniProt
RGD
PMID:20676083 PMID:25535373 GO_REF:0000024 NCBI chr20:5,124,512...5,138,084
Ensembl chr20:5,125,349...5,138,084
JBrowse link
G Camlg calcium modulating ligand involved_in ISO
IDA
(PMID:23041287), (PMID:27226539) RGD PMID:23041287 PMID:27226539, PMID:23041287 RGD:42721997 NCBI chr17:9,523,792...9,534,683
Ensembl chr17:9,523,795...9,534,653
JBrowse link
G Emc1 ER membrane protein complex subunit 1 involved_in ISO (PMID:29242231) RGD PMID:29242231 NCBI chr 5:157,820,908...157,846,226
Ensembl chr 5:157,820,908...157,846,226
JBrowse link
G Emc10 ER membrane protein complex subunit 10 involved_in ISS
ISO
GO_REF:0000024
(PMID:29242231)
UniProt
RGD
PMID:29242231 GO_REF:0000024 NCBI chr 1:100,495,112...100,501,468
Ensembl chr 1:100,495,119...100,501,437
JBrowse link
G Emc2 ER membrane protein complex subunit 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:29242231)
Ensembl
UniProt
RGD
PMID:29242231 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:82,338,639...82,377,389
Ensembl chr 7:82,338,663...82,377,109
JBrowse link
G Emc3 ER membrane protein complex subunit 3 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr 4:145,471,466...145,487,375
Ensembl chr 4:145,471,454...145,487,426
JBrowse link
G Emc4 ER membrane protein complex subunit 4 involved_in ISO (PMID:29242231) RGD PMID:29242231 NCBI chr 3:103,852,139...103,857,172
Ensembl chr 3:103,852,139...103,857,158
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO (PMID:29242231) RGD PMID:29242231 NCBI chr10:59,741,772...59,743,338
Ensembl chr10:59,741,772...59,743,315
JBrowse link
G Emc7 ER membrane protein complex subunit 7 involved_in ISO (PMID:29242231) RGD PMID:29242231 NCBI chr 3:103,945,276...103,955,970
Ensembl chr 3:103,945,329...103,956,007
JBrowse link
G Emc8 ER membrane protein complex subunit 8 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr19:54,235,949...54,245,810
Ensembl chr19:54,235,936...54,245,855
JBrowse link
G Emc9 ER membrane protein complex subunit 9 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr15:34,258,940...34,263,156
Ensembl chr15:34,256,374...34,263,224
JBrowse link
G Get1 guided entry of tail-anchored proteins factor 1 involved_in IBA
IDA
ISO
PMID:21873635
PMID:23041287
(PMID:23041287), (PMID:27226539)
RGD PMID:23041287 PMID:27226539, PMID:21873635, PMID:23041287 RGD:13792537, RGD:42721997 NCBI chr11:36,497,513...36,511,445
Ensembl chr11:36,497,509...36,511,535
JBrowse link
G Get3 guided entry of tail-anchored proteins factor 3, ATPase involved_in ISO
IDA
(PMID:23041287), (PMID:25535373)
PMID:27226539
RGD PMID:23041287 PMID:25535373, PMID:23041287, PMID:27226539 RGD:42721997, RGD:42721993 NCBI chr19:26,133,024...26,142,637
Ensembl chr19:26,133,027...26,141,111
JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in ISO (PMID:20676083), (PMID:25535373) RGD PMID:20676083 PMID:25535373 NCBI chr12:17,469,112...17,486,709
Ensembl chr12:17,469,112...17,486,157
JBrowse link
G Mmgt1 membrane magnesium transporter 1 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr  X:158,966,694...158,978,995
Ensembl chr  X:158,966,673...158,978,995
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISS
ISO
GO_REF:0000024
(PMID:25535373)
UniProt
RGD
PMID:25535373 GO_REF:0000024 NCBI chr 7:11,521,949...11,538,691
Ensembl chr 7:11,521,998...11,539,319
JBrowse link
G Ubl4a ubiquitin-like 4A involved_in ISO
ISS
(PMID:20676083), (PMID:25535373)
GO_REF:0000024
RGD
UniProt
PMID:20676083 PMID:25535373 GO_REF:0000024 NCBI chr  X:156,340,919...156,343,771
Ensembl chr  X:156,340,925...156,343,777
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    cellular process 18457
      cellular component organization or biogenesis 6724
        cellular component organization 6479
          endomembrane system organization 502
            endoplasmic reticulum organization 92
              endoplasmic reticulum cisternal network organization + 0
              endoplasmic reticulum disassembly 0
              endoplasmic reticulum inheritance 0
              endoplasmic reticulum localization + 11
              endoplasmic reticulum membrane fusion 2
              endoplasmic reticulum membrane organization + 13
              endoplasmic reticulum polarization 1
              endoplasmic reticulum tubular network organization + 19
              protein insertion into ER membrane + 22
              vesicle fusion with endoplasmic reticulum + 0
paths to the root