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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum organization
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Accession:GO:0007029 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum.
Synonyms:exact_synonym: ER organisation;   endoplasmic reticulum organisation
 related_synonym: ER organization and biogenesis;   endoplasmic reticulum morphology;   endoplasmic reticulum organization and biogenesis



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endoplasmic reticulum organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atl1 atlastin GTPase 1 involved_in ISO
IBA
ISS
(PMID:19665976)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:19665976 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:88,377,168...88,475,242
Ensembl chr 6:88,377,239...88,475,204
JBrowse link
G Atl2 atlastin GTPase 2 involved_in IBA
ISO
PMID:21873635
(PMID:18270207), (PMID:19665976)
RGD PMID:18270207 PMID:19665976 PMID:21873635 RGD:13792537 NCBI chr 6:15,139,071...15,180,421
Ensembl chr 6:15,139,044...15,180,421
JBrowse link
G Atl3 atlastin GTPase 3 involved_in IEA
ISS
IBA
ISO
GO_REF:0000107
GO_REF:0000024
PMID:21873635
(PMID:18270207), (PMID:19665976)
Ensembl
UniProt
RGD
PMID:18270207 PMID:19665976 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 1:204,680,958...204,727,360
Ensembl chr 1:204,680,968...204,723,354
JBrowse link
G Bnip1 BCL2 interacting protein 1 involved_in ISO
ISS
(PMID:15272311)
GO_REF:0000024
RGD
HGNC-UCL
PMID:15272311 GO_REF:0000024 NCBI chr10:16,386,876...16,399,124
Ensembl chr10:16,386,841...16,399,157
JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO MGI:1856326 (MGI:53761|PMID:5041196) RGD PMID:5041196 MGI:53761 NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
JBrowse link
G Casq1 calsequestrin 1 acts_upstream_of_or_within ISO MGI:3530841 (MGI:3814667|PMID:17627988) RGD PMID:17627988 MGI:3814667 NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
JBrowse link
G Cav2 caveolin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:2180372 (MGI:3695802|PMID:17200204)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17200204 GO_REF:0000024 GO_REF:0000107 MGI:3695802 NCBI chr 4:45,616,766...45,624,144
Ensembl chr 4:45,616,712...45,624,244
JBrowse link
G Ccdc47 coiled-coil domain containing 47 acts_upstream_of_or_within ISO MGI:3722141 (MGI:5605216|PMID:25009997) RGD PMID:25009997 MGI:5605216 NCBI chr10:91,130,303...91,148,829
Ensembl chr10:91,130,303...91,148,881
JBrowse link
G Cert1 ceramide transporter 1 acts_upstream_of_or_within ISO MGI:3837565 (MGI:3836857|PMID:19139267) RGD PMID:19139267 MGI:3836857 NCBI chr 2:27,882,546...27,987,090
Ensembl chr 2:27,882,555...27,987,074
JBrowse link
G Dnm1l dynamin 1-like NOT|involved_in ISO (PMID:11514614) RGD PMID:11514614 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO MGI:2177666 (MGI:2136067|PMID:11430819) RGD PMID:11430819 MGI:2136067 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911
JBrowse link
G Gak cyclin G associated kinase acts_upstream_of_or_within ISO MGI:2176228|MGI:5305733 (MGI:5305417|PMID:18434600) RGD PMID:18434600 MGI:5305417 NCBI chr14:1,089,853...1,164,098
Ensembl chr14:1,089,866...1,216,398
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (MGI:3608142|PMID:16256944) RGD PMID:16256944 MGI:3608142 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Jagn1 jagunal homolog 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,591,577...146,596,287
Ensembl chr 4:146,591,510...146,596,288
JBrowse link
G Lman1 lectin, mannose-binding, 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:4123879 (MGI:5293569|PMID:21795745)
GO_REF:0000107
RGD
Ensembl
PMID:21795745 PMID:21873635 GO_REF:0000107 MGI:5293569, RGD:13792537 NCBI chr18:59,508,996...59,530,873
Ensembl chr18:59,508,996...59,530,851
JBrowse link
G Lman1l lectin, mannose-binding, 1 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:58,010,839...58,029,599
Ensembl chr 8:58,010,839...58,023,681
JBrowse link
G Lman2 lectin, mannose-binding 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:9,269,236...9,286,923
Ensembl chr17:9,269,022...9,287,265
JBrowse link
G Lman2l lectin, mannose-binding 2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:38,683,174...38,685,249
Ensembl chr 9:38,661,712...38,685,337
JBrowse link
G Lnpk lunapark, ER junction formation factor involved_in ISO (PMID:30032983) RGD PMID:30032983 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518
JBrowse link
G LOC120094667 lectin, mannose binding 2 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:38,661,709...38,683,659
Ensembl chr 9:38,661,712...38,685,337
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in IBA
ISO
PMID:21873635
(MGI:5608715|PMID:25201882)
(PMID:25201882)
RGD PMID:25201882 PMID:21873635 MGI:5608715, RGD:13792537 NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703
JBrowse link
G Mapk15 mitogen-activated protein kinase 15 involved_in ISO
IEA
ISS
(PMID:21847093)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21847093 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:107,694,907...107,714,640
Ensembl chr 7:107,694,964...107,714,645
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 involved_in ISO
IEA
(PMID:28442536)
GO_REF:0000107
RGD
Ensembl
PMID:28442536 GO_REF:0000107 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972
JBrowse link
G Pex5 peroxisomal biogenesis factor 5 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2176228|MGI:2384516 (MGI:3656427|PMID:15732085)
GO_REF:0000107
RGD
Ensembl
PMID:15732085 GO_REF:0000107 MGI:3656427 NCBI chr 4:157,270,671...157,296,432
Ensembl chr 4:157,270,672...157,296,431
JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (MGI:6790058|PMID:34338405) RGD PMID:34338405 MGI:6790058 NCBI chr 2:76,335,609...76,474,817
Ensembl chr 2:76,335,609...76,493,898
JBrowse link
G Retreg2 reticulophagy regulator family member 2 acts_upstream_of_or_within ISO (MGI:6790058|PMID:34338405) RGD PMID:34338405 MGI:6790058 NCBI chr 9:76,640,282...76,646,400
Ensembl chr 9:76,640,319...76,646,395
JBrowse link
G Retreg3 reticulophagy regulator family member 3 acts_upstream_of_or_within ISO (MGI:6790058|PMID:34338405) RGD PMID:34338405 MGI:6790058 NCBI chr10:86,028,767...86,052,575
Ensembl chr10:86,028,774...86,052,692
JBrowse link
G Rnf112 ring finger protein 112 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,121,146...46,126,691
Ensembl chr10:46,121,148...46,126,699
JBrowse link
G Rtn4 reticulon 4 involved_in ISO (PMID:27786289) RGD PMID:27786289 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:17428803), (PMID:21768384), (PMID:28442536)
(MGI:6211123|PMID:17428803)
RGD PMID:17428803 PMID:21768384 PMID:28442536 MGI:6211123 NCBI chr 3:9,229,687...9,264,837
Ensembl chr 3:9,229,687...9,264,273
JBrowse link
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor involved_in ISO (PMID:21768384) RGD PMID:21768384 NCBI chr13:69,665,757...69,727,199
Ensembl chr13:69,684,291...69,727,196
JBrowse link
G Sec31a SEC31 homolog A, COPII coat complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:9,214,324...9,269,281
Ensembl chr14:9,214,349...9,269,273
JBrowse link
G Sec31b SEC31 homolog B, COPII coat complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:243,376,283...243,404,557
Ensembl chr 1:243,378,456...243,404,557
JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 acts_upstream_of_or_within ISO (PMID:22375059) RGD PMID:22375059 NCBI chr 4:120,973,519...120,987,871
Ensembl chr 4:120,960,626...120,987,925
JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 involved_in ISO (PMID:31495489) RGD PMID:31495489 NCBI chr11:83,362,534...83,386,257
Ensembl chr11:83,362,534...83,386,250
JBrowse link
G Sptssb serine palmitoyltransferase, small subunit B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5689843 (MGI:5689923|PMID:26438849)
RGD PMID:26438849 PMID:21873635 MGI:5689923, RGD:13792537 NCBI chr 2:154,133,728...154,162,127
Ensembl chr 2:154,133,733...154,163,120
JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 involved_in ISO (PMID:24454821) RGD PMID:24454821 NCBI chr 4:149,069,252...149,239,585
Ensembl chr 4:149,069,260...149,239,620
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:6260081|PMID:30236446) RGD PMID:30236446 MGI:6260081 NCBI chr12:32,052,542...32,061,596
Ensembl chr12:32,052,543...32,071,903
JBrowse link
G Tmem38a transmembrane protein 38a involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1098718 (MGI:3715564|PMID:17611541)
Ensembl
RGD
PMID:17611541 GO_REF:0000107 MGI:3715564 NCBI chr16:17,258,160...17,274,204
Ensembl chr16:17,258,164...17,273,415
JBrowse link
G Tmem38b transmembrane protein 38B acts_upstream_of_or_within ISO MGI:1921416 (MGI:3715564|PMID:17611541), (MGI:6141091|PMID:27188440) RGD PMID:17611541 PMID:27188440 MGI:3715564 MGI:6141091 NCBI chr 5:68,460,304...68,496,026
Ensembl chr 5:68,460,304...68,496,025
JBrowse link
G Tor1aip2 torsin 1A interacting protein 2 involved_in ISO
ISS
IBA
(PMID:24275647)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:24275647 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr13:68,225,226...68,256,536
Ensembl chr13:68,230,009...68,256,536
Ensembl chr13:68,230,009...68,256,536
JBrowse link
G Tor1b torsin family 1, member B involved_in ISO (PMID:24275647) RGD PMID:24275647 NCBI chr 3:14,243,181...14,249,279
Ensembl chr 3:14,243,243...14,249,272
JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO (MGI:5916257|PMID:28437467) RGD PMID:28437467 MGI:5916257 NCBI chr 1:173,816,341...173,829,681
Ensembl chr 1:173,816,339...173,830,302
JBrowse link
G Use1 unconventional SNARE in the ER 1 acts_upstream_of_or_within ISO MGI:2176173|MGI:3842569 (MGI:3842069|PMID:19188447) RGD PMID:19188447 MGI:3842069 NCBI chr16:18,038,284...18,041,826
Ensembl chr16:18,039,173...18,041,826
JBrowse link
G Vapa VAMP associated protein A NOT|involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 9:105,177,904...105,208,400
Ensembl chr 9:105,177,907...105,207,847
JBrowse link
G Vapb VAMP associated protein B and C involved_in ISO (PMID:18713837) RGD PMID:18713837 NCBI chr 3:162,536,090...162,578,738
Ensembl chr 3:162,535,905...162,573,763
JBrowse link
endoplasmic reticulum localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856005|MGI:1858520 (MGI:1354789|PMID:10749990), (MGI:83960|PMID:8899740) RGD PMID:8899740 PMID:10749990 MGI:1354789 MGI:83960 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Tle6 TLE family member 6, subcortical maternal complex member involved_in ISO (MGI:6467696|PMID:28992324) RGD PMID:28992324 MGI:6467696 NCBI chr 7:8,107,050...8,118,639
Ensembl chr 7:8,107,207...8,118,639
JBrowse link
G Zbed3 zinc finger, BED-type containing 3 involved_in ISO (MGI:6467696|PMID:28992324) RGD PMID:28992324 MGI:6467696 NCBI chr 2:26,587,620...26,600,177
Ensembl chr 2:26,587,572...26,600,386
JBrowse link
endoplasmic reticulum membrane fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip1 BCL2 interacting protein 1 involved_in ISO
ISS
(PMID:15272311)
GO_REF:0000024
RGD
HGNC-UCL
PMID:15272311 GO_REF:0000024 NCBI chr10:16,386,876...16,399,124
Ensembl chr10:16,386,841...16,399,157
JBrowse link
G Vcpip1 valosin containing protein interacting protein 1 involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12473691 PMID:21873635 RGD:1299500, RGD:13792537 NCBI chr 5:9,534,247...9,560,889
Ensembl chr 5:9,534,129...9,562,040
JBrowse link
endoplasmic reticulum membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lpcat3 lysophosphatidylcholine acyltransferase 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5927299|PMID:28846071)
UniProt
RGD
PMID:28846071 GO_REF:0000024 MGI:5927299 NCBI chr 4:157,468,397...157,509,889
Ensembl chr 4:157,468,290...157,509,880
JBrowse link
G Mospd3 motile sperm domain containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,095,203...19,100,303
Ensembl chr12:19,095,242...19,099,477
JBrowse link
G Reep5 receptor accessory protein 5 involved_in ISO
ISS
(MGI:6401630|PMID:32075961)
GO_REF:0000024
RGD
UniProt
PMID:32075961 GO_REF:0000024 MGI:6401630 NCBI chr18:25,945,375...25,983,271
Ensembl chr18:25,945,381...25,976,509
JBrowse link
G Steep1 STING1 ER exit protein 1 involved_in ISO (PMID:32690950) RGD PMID:32690950 NCBI chr  X:116,087,626...116,114,159
Ensembl chr  X:116,060,929...116,114,159
JBrowse link
G Stx18 syntaxin 18 involved_in ISO (PMID:19401338) RGD PMID:19401338 NCBI chr14:72,670,683...72,761,423
Ensembl chr14:72,670,411...72,761,464
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO MGI:4456438 (MGI:5914333|PMID:28797121) RGD PMID:28797121 MGI:5914333 NCBI chr12:32,052,542...32,061,596
Ensembl chr12:32,052,543...32,071,903
JBrowse link
G Trdn triadin IMP RGD PMID:22505613 RGD:7327226 NCBI chr 1:23,955,651...24,410,494
Ensembl chr 1:23,955,651...24,410,595
JBrowse link
G Vapb VAMP associated protein B and C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:162,536,090...162,578,738
Ensembl chr 3:162,535,905...162,573,763
JBrowse link
endoplasmic reticulum polarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shtn1 shootin 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5505333|PMID:23864681)
UniProt
RGD
PMID:23864681 GO_REF:0000024 MGI:5505333 NCBI chr 1:258,121,966...258,225,861
Ensembl chr 1:258,121,968...258,228,265
JBrowse link
endoplasmic reticulum tubular network formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994
JBrowse link
G Rtn3 reticulon 3 involved_in ISO (PMID:25612671)
(MGI:5770041|PMID:24262037)
RGD PMID:24262037 PMID:25612671 MGI:5770041 NCBI chr 1:204,612,675...204,669,212
Ensembl chr 1:204,612,675...204,669,275
JBrowse link
G Rtn4 reticulon 4 involved_in ISO
ISS
IEA
(PMID:24262037), (PMID:25612671)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:24262037 PMID:25612671 GO_REF:0000024 GO_REF:0000107 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686
JBrowse link
G Zfyve27 zinc finger FYVE-type containing 27 involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000002
GO_REF:0000024
(PMID:23969831), (PMID:24668814)
InterPro
UniProt
RGD
PMID:23969831 PMID:24668814 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 1:240,979,831...241,003,193
Ensembl chr 1:240,979,842...241,003,193
JBrowse link
endoplasmic reticulum tubular network maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lnpk lunapark, ER junction formation factor involved_in ISO (PMID:25548161), (PMID:27619977) RGD PMID:25548161 PMID:27619977 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518
JBrowse link
endoplasmic reticulum tubular network membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994
JBrowse link
G Atl1 atlastin GTPase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27619977)
UniProt
RGD
PMID:27619977 GO_REF:0000024 NCBI chr 6:88,377,168...88,475,242
Ensembl chr 6:88,377,239...88,475,204
JBrowse link
G Atl2 atlastin GTPase 2 involved_in ISO (PMID:27619977) RGD PMID:27619977 NCBI chr 6:15,139,071...15,180,421
Ensembl chr 6:15,139,044...15,180,421
JBrowse link
G Rtn4 reticulon 4 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:27619977)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27619977 GO_REF:0000024 GO_REF:0000107 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686
JBrowse link
endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lnpk lunapark, ER junction formation factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518
JBrowse link
G Rab10 RAB10, member RAS oncogene family involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:23263280), (PMID:24891604)
UniProt
Ensembl
RGD
PMID:23263280 PMID:24891604 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:26,267,081...26,319,739
Ensembl chr 6:26,266,859...26,320,193
JBrowse link
G Rab18 RAB18, member RAS oncogene family involved_in ISO (PMID:24891604) RGD PMID:24891604 NCBI chr17:54,944,099...54,976,093
Ensembl chr17:54,943,955...54,976,043
JBrowse link
G Reep1 receptor accessory protein 1 involved_in ISO
IBA
(PMID:20200447)
PMID:21873635
RGD PMID:20200447 PMID:21873635 RGD:13792537 NCBI chr 4:103,746,004...103,862,347
Ensembl chr 4:103,745,633...103,862,338
JBrowse link
G Reep2 receptor accessory protein 2 involved_in ISO
IBA
(PMID:24388663)
PMID:21873635
RGD PMID:24388663 PMID:21873635 RGD:13792537 NCBI chr18:26,438,130...26,447,165
Ensembl chr18:26,438,346...26,447,161
JBrowse link
G Reep3 receptor accessory protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:21,493,868...21,578,698
Ensembl chr20:21,493,954...21,578,697
JBrowse link
G Reep4 receptor accessory protein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:45,620,317...45,623,524
Ensembl chr15:45,619,941...45,623,526
JBrowse link
G Rtn3 reticulon 3 involved_in ISO (PMID:18779370) RGD PMID:18779370 NCBI chr 1:204,612,675...204,669,212
Ensembl chr 1:204,612,675...204,669,275
JBrowse link
G Rtn4 reticulon 4 involved_in ISO
ISS
(PMID:18779370), (PMID:26906412)
GO_REF:0000024
RGD
UniProt
PMID:18779370 PMID:26906412 GO_REF:0000024 NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686
JBrowse link
G Tmem170a transmembrane protein 170A involved_in ISO
IBA
(PMID:26906412)
PMID:21873635
RGD PMID:26906412 PMID:21873635 RGD:13792537 NCBI chr19:39,833,947...39,846,807
Ensembl chr19:39,833,980...39,846,783
JBrowse link
G Tmem33 transmembrane protein 33 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:40,888,485...40,910,715
Ensembl chr14:40,885,712...40,910,715
JBrowse link
G Use1 unconventional SNARE in the ER 1 acts_upstream_of_or_within ISO MGI:3842569|MGI:3842571 (MGI:3842069|PMID:19188447) RGD PMID:19188447 MGI:3842069 NCBI chr16:18,038,284...18,041,826
Ensembl chr16:18,039,173...18,041,826
JBrowse link
endoplasmic reticulum-plasma membrane tethering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esyt1 extended synaptotagmin 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:928,848...946,199
Ensembl chr 7:928,848...946,199
JBrowse link
G Esyt2 extended synaptotagmin 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:137,219,653...137,312,590
Ensembl chr 6:137,219,707...137,312,590
JBrowse link
G Esyt3 extended synaptotagmin 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:99,870,418...99,917,298
Ensembl chr 8:99,871,149...99,917,232
JBrowse link
G Gramd2a GRAM domain containing 2A involved_in ISO
IBA
(PMID:29469807)
PMID:21873635
RGD PMID:29469807 PMID:21873635 RGD:13792537 NCBI chr 8:60,079,744...60,117,788
Ensembl chr 8:60,080,338...60,115,842
JBrowse link
G Mospd3 motile sperm domain containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,095,203...19,100,303
Ensembl chr12:19,095,242...19,099,477
JBrowse link
G Vapb VAMP associated protein B and C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:162,536,090...162,578,738
Ensembl chr 3:162,535,905...162,573,763
JBrowse link
establishment of endoplasmic reticulum localization to postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo5a myosin VA involved_in ISO (MGI:4939562|PMID:21151132) RGD PMID:21151132 MGI:4939562 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
maintenance of ER location term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07043557.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:22,481,952...22,483,036 JBrowse link
G Polr2m RNA polymerase II subunit M involved_in IBA
ISO
PMID:21873635
(MGI:3688366|PMID:14602821)
RGD PMID:14602821 PMID:21873635 MGI:3688366, RGD:13792537 NCBI chr 8:72,131,992...72,139,423
Ensembl chr 8:72,131,530...72,243,036
JBrowse link
positive regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atl3 atlastin GTPase 3 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27619977)
UniProt
Ensembl
RGD
PMID:27619977 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:204,680,958...204,727,360
Ensembl chr 1:204,680,968...204,723,354
JBrowse link
G Lnpk lunapark, ER junction formation factor involved_in ISO (PMID:24223779), (PMID:25404289) RGD PMID:24223779 PMID:25404289 NCBI chr 3:59,418,872...59,487,029
Ensembl chr 3:59,424,286...59,486,518
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
(PMID:24891604)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:24891604 GO_REF:0000024 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO
IEA
(PMID:24891604)
GO_REF:0000107
RGD
Ensembl
PMID:24891604 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
JBrowse link
protein insertion into ER membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc47 coiled-coil domain containing 47 involved_in ISO
ISS
(PMID:32814900)
GO_REF:0000024
RGD
UniProt
PMID:32814900 GO_REF:0000024 NCBI chr10:91,130,303...91,148,829
Ensembl chr10:91,130,303...91,148,881
JBrowse link
G Get1 guided entry of tail-anchored proteins factor 1 involved_in ISO (PMID:31417168), (PMID:32187542) RGD PMID:31417168 PMID:32187542 NCBI chr11:35,438,555...35,460,156
Ensembl chr11:35,445,815...35,459,973
JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:15,377,009...15,394,238
Ensembl chr12:15,377,009...15,394,053
JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:8616892)
UniProt
RGD
PMID:8616892 GO_REF:0000024 NCBI chr 4:120,973,519...120,987,871
Ensembl chr 4:120,960,626...120,987,925
JBrowse link
G Tram1 translocation associated membrane protein 1 involved_in IBA
ISS
IEA
ISO
PMID:21873635
GO_REF:0000024
GO_REF:0000107
(PMID:8616892)
UniProt
Ensembl
RGD
PMID:8616892 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 5:5,642,579...5,667,666
Ensembl chr 5:5,642,546...5,686,971
JBrowse link
G Tram1l1 translocation associated membrane protein 1-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:212,511,130...212,513,311 JBrowse link
G Tram2 translocation associated membrane protein 2 involved_in ISO
IBA
(PMID:27499293)
PMID:21873635
RGD PMID:27499293 PMID:21873635 RGD:13792537 NCBI chr 9:23,419,204...23,498,745
Ensembl chr 9:23,424,232...23,498,689
JBrowse link
G Wdr83os WD repeat domain 83 opposite strand involved_in ISO
IBA
(PMID:32814900)
PMID:21873635
RGD PMID:32814900 PMID:21873635 RGD:13792537 NCBI chr19:23,075,372...23,076,934
Ensembl chr19:23,075,376...23,076,894
JBrowse link
protein insertion into ER membrane by stop-transfer membrane-anchor sequence term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emc1 ER membrane protein complex subunit 1 involved_in ISO (PMID:29242231), (PMID:29809151), (PMID:30415835) RGD PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr 5:151,608,557...151,633,888
Ensembl chr 5:151,608,568...151,633,888
JBrowse link
G Emc10 ER membrane protein complex subunit 10 involved_in ISS
ISO
GO_REF:0000024
(PMID:29242231), (PMID:29809151), (PMID:30415835)
UniProt
RGD
PMID:29242231 PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr 1:94,980,260...94,988,847
Ensembl chr 1:94,943,587...94,988,847
JBrowse link
G Emc2 ER membrane protein complex subunit 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:29242231), (PMID:29809151), (PMID:30415835)
UniProt
RGD
PMID:29242231 PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr 7:74,587,196...74,624,163
Ensembl chr 7:74,587,175...74,625,189
JBrowse link
G Emc3 ER membrane protein complex subunit 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:29242231), (PMID:29809151), (PMID:30415835)
UniProt
RGD
PMID:29242231 PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr 4:146,663,065...146,678,976
Ensembl chr 4:146,663,067...146,679,029
JBrowse link
G Emc4 ER membrane protein complex subunit 4 involved_in ISO (PMID:29242231), (PMID:29809151), (PMID:30415835) RGD PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr 3:99,169,711...99,174,730
Ensembl chr 3:99,169,711...99,174,729
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO (PMID:29242231), (PMID:29809151), (PMID:30415835) RGD PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr10:57,794,072...57,795,671
Ensembl chr10:57,793,685...57,796,217
JBrowse link
G Emc7 ER membrane protein complex subunit 7 involved_in ISO (PMID:29242231), (PMID:29809151), (PMID:30415835) RGD PMID:29242231 PMID:29809151 PMID:30415835 NCBI chr 3:99,263,933...99,274,365
Ensembl chr 3:99,263,980...99,274,360
JBrowse link
G Emc8 ER membrane protein complex subunit 8 involved_in ISS
ISO
GO_REF:0000024
(PMID:29242231), (PMID:29809151), (PMID:30415835)
UniProt
RGD
PMID:29242231 PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr19:48,708,304...48,721,626
Ensembl chr19:48,582,574...48,721,543
JBrowse link
G Emc9 ER membrane protein complex subunit 9 involved_in ISS
ISO
GO_REF:0000024
(PMID:29242231), (PMID:29809151), (PMID:30415835)
UniProt
RGD
PMID:29242231 PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr15:29,071,881...29,076,098
Ensembl chr15:29,071,883...29,076,098
JBrowse link
G Mmgt1 membrane magnesium transporter 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:29242231), (PMID:29809151), (PMID:30415835)
UniProt
RGD
PMID:29242231 PMID:29809151 PMID:30415835 GO_REF:0000024 NCBI chr  X:134,408,463...134,420,798
Ensembl chr  X:134,408,466...134,420,729
JBrowse link
regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 involved_in ISO (PMID:24262037) RGD PMID:24262037 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994
JBrowse link
G Tmem33 transmembrane protein 33 involved_in ISO
ISS
(PMID:25612671)
GO_REF:0000024
RGD
UniProt
PMID:25612671 GO_REF:0000024 NCBI chr14:40,888,485...40,910,715
Ensembl chr14:40,885,712...40,910,715
JBrowse link
tail-anchored membrane protein insertion into ER membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag6 BAG cochaperone 6 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20676083), (PMID:25535373)
UniProt
Ensembl
RGD
PMID:20676083 PMID:25535373 GO_REF:0000024 GO_REF:0000107 NCBI chr20:3,675,938...3,690,414
Ensembl chr20:3,675,938...3,688,657
JBrowse link
G Camlg calcium modulating ligand involved_in ISO
IBA
IDA
(PMID:23041287), (PMID:27226539)
PMID:21873635
RGD PMID:23041287 PMID:27226539 PMID:21873635 PMID:23041287 RGD:13792537, RGD:42721997 NCBI chr17:8,992,697...9,003,576
Ensembl chr17:8,992,696...9,003,552
JBrowse link
G Emc1 ER membrane protein complex subunit 1 involved_in ISO (PMID:29242231) RGD PMID:29242231 NCBI chr 5:151,608,557...151,633,888
Ensembl chr 5:151,608,568...151,633,888
JBrowse link
G Emc10 ER membrane protein complex subunit 10 involved_in ISS
ISO
GO_REF:0000024
(PMID:29242231)
UniProt
RGD
PMID:29242231 GO_REF:0000024 NCBI chr 1:94,980,260...94,988,847
Ensembl chr 1:94,943,587...94,988,847
JBrowse link
G Emc2 ER membrane protein complex subunit 2 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr 7:74,587,196...74,624,163
Ensembl chr 7:74,587,175...74,625,189
JBrowse link
G Emc3 ER membrane protein complex subunit 3 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr 4:146,663,065...146,678,976
Ensembl chr 4:146,663,067...146,679,029
JBrowse link
G Emc4 ER membrane protein complex subunit 4 involved_in ISO (PMID:29242231) RGD PMID:29242231 NCBI chr 3:99,169,711...99,174,730
Ensembl chr 3:99,169,711...99,174,729
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO (PMID:29242231) RGD PMID:29242231 NCBI chr10:57,794,072...57,795,671
Ensembl chr10:57,793,685...57,796,217
JBrowse link
G Emc7 ER membrane protein complex subunit 7 involved_in ISO (PMID:29242231) RGD PMID:29242231 NCBI chr 3:99,263,933...99,274,365
Ensembl chr 3:99,263,980...99,274,360
JBrowse link
G Emc8 ER membrane protein complex subunit 8 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr19:48,708,304...48,721,626
Ensembl chr19:48,582,574...48,721,543
JBrowse link
G Emc9 ER membrane protein complex subunit 9 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr15:29,071,881...29,076,098
Ensembl chr15:29,071,883...29,076,098
JBrowse link
G Get1 guided entry of tail-anchored proteins factor 1 involved_in ISO
IBA
IDA
(PMID:23041287), (PMID:27226539)
PMID:21873635
RGD PMID:23041287 PMID:27226539 PMID:21873635 PMID:23041287 RGD:13792537, RGD:42721997 NCBI chr11:35,438,555...35,460,156
Ensembl chr11:35,445,815...35,459,973
JBrowse link
G Get3 guided entry of tail-anchored proteins factor 3, ATPase involved_in ISO
IDA
(PMID:23041287), (PMID:25535373)
PMID:27226539
RGD PMID:23041287 PMID:25535373 PMID:23041287 PMID:27226539 RGD:42721997, RGD:42721993 NCBI chr19:23,130,109...23,138,196
Ensembl chr19:23,130,109...23,138,193
JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in ISO (PMID:20676083), (PMID:25535373) RGD PMID:20676083 PMID:25535373 NCBI chr12:15,377,009...15,394,238
Ensembl chr12:15,377,009...15,394,053
JBrowse link
G Mmgt1 membrane magnesium transporter 1 involved_in ISO
ISS
(PMID:29242231)
GO_REF:0000024
RGD
UniProt
PMID:29242231 GO_REF:0000024 NCBI chr  X:134,408,463...134,420,798
Ensembl chr  X:134,408,466...134,420,729
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISS
ISO
GO_REF:0000024
(PMID:25535373)
UniProt
RGD
PMID:25535373 GO_REF:0000024 NCBI chr 7:8,653,681...8,670,460
Ensembl chr 7:8,653,778...8,670,458
JBrowse link
G Ubl4a ubiquitin-like 4A involved_in ISO
ISS
(PMID:20676083), (PMID:25535373)
GO_REF:0000024
RGD
UniProt
PMID:20676083 PMID:25535373 GO_REF:0000024 NCBI chr  X:152,151,242...152,154,094
Ensembl chr  X:152,151,460...152,154,069
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    cellular process 18319
      cellular component organization or biogenesis 6656
        cellular component organization 6418
          endomembrane system organization 528
            endoplasmic reticulum organization 97
              endoplasmic reticulum cisternal network organization + 0
              endoplasmic reticulum disassembly 0
              endoplasmic reticulum inheritance 0
              endoplasmic reticulum localization + 11
              endoplasmic reticulum membrane fusion 2
              endoplasmic reticulum membrane organization + 14
              endoplasmic reticulum polarization 1
              endoplasmic reticulum tubular network organization + 19
              protein insertion into ER membrane + 23
              vesicle fusion with endoplasmic reticulum + 0
paths to the root