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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasm organization
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Accession:GO:0007028 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Synonyms:exact_synonym: cytoplasm organisation
 related_synonym: cytoplasm organization and biogenesis



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cytoplasm organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Capza3 capping actin protein of muscle Z-line subunit alpha 3 acts_upstream_of_or_within ISO MGI:3590195 (MGI:3848085|PMID:19341723) RGD PMID:19341723 MGI:3848085 NCBI chr 4:172,929,273...172,930,486
Ensembl chr 4:172,928,887...172,932,535
JBrowse link
G Kif5b kinesin family member 5B acts_upstream_of_or_within ISO MGI:2159694 (MGI:1270012|PMID:9657148) RGD PMID:9657148 MGI:1270012 NCBI chr17:51,489,873...51,527,508
Ensembl chr17:51,489,944...51,527,508
JBrowse link
G Padi6 peptidyl arginine deiminase 6 acts_upstream_of_or_within ISO MGI:3806009 (MGI:3805420|PMID:18599511) RGD PMID:18599511 MGI:3805420 NCBI chr 5:153,022,089...153,037,376
Ensembl chr 5:153,021,965...153,037,414
JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO MGI:3584037 (MGI:3583493|PMID:15989966) RGD PMID:15989966 MGI:3583493 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
JBrowse link
G Tfcp2l1 transcription factor CP2-like 1 acts_upstream_of_or_within ISO MGI:3707684 (MGI:3703120|PMID:17079272) RGD PMID:17079272 MGI:3703120 NCBI chr13:29,733,813...29,793,870
Ensembl chr13:29,733,840...29,793,870
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (MGI:4943609|PMID:21397848) RGD PMID:21397848 MGI:4943609 NCBI chr10:44,577,740...44,581,686
Ensembl chr10:44,577,675...44,581,077
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871
JBrowse link
G Tdrd15 tudor domain containing 15 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:30,741,956...30,818,500
Ensembl chr 6:30,741,086...30,767,049
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(MGI:4946318|PMID:21383078)
Ensembl
UniProt
RGD
PMID:21383078 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:4946318, RGD:13792537 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755
JBrowse link
pole plasm assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr77 WD repeat domain 77 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:193,435,465...193,445,534
Ensembl chr 2:193,435,468...193,445,520
JBrowse link
vitellogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv6 ETS variant transcription factor 6 acts_upstream_of_or_within ISO MGI:2177950 (MGI:1095693|PMID:9250681) RGD PMID:9250681 MGI:1095693 NCBI chr 4:166,849,031...167,085,211
Ensembl chr 4:166,847,686...167,084,992
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:2385824 (MGI:1926238|PMID:11044407) RGD PMID:11044407 MGI:1926238 NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO MGI:2155441 (MGI:85697|PMID:9030684) RGD PMID:9030684 MGI:85697 NCBI chr 6:14,533,870...14,613,348
Ensembl chr 6:14,533,360...14,611,107
JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 acts_upstream_of_or_within ISO MGI:3769389 (MGI:3768282|PMID:17967885) RGD PMID:17967885 MGI:3768282 NCBI chr16:1,027,083...1,232,616
Ensembl chr16:1,027,325...1,232,597
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    cellular process 18637
      cellular component organization or biogenesis 6736
        cellular component organization 6486
          cytoplasm organization 17
            pole plasm assembly + 8
            vitellogenesis + 4
paths to the root