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ONTOLOGY REPORT - ANNOTATIONS


Term:substrate-dependent cell migration
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Accession:GO:0006929 term browser browse the term
Definition:The orderly movement of a cell from one site to another along a substrate such as the extracellular matrix; the migrating cell forms a protrusion that attaches to the substrate.
Synonyms:exact_synonym: substrate-bound cell migration



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substrate-dependent cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks1a ankyrin repeat and sterile alpha motif domain containing 1A involved_in ISO (MGI:3768579|PMID:17875921) RGD PMID:17875921 MGI:3768579 NCBI chr20:5,963,658...6,117,139
Ensembl chr20:5,963,678...6,117,148
JBrowse link
G Cspg4 chondroitin sulfate proteoglycan 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1924307 (MGI:5699914|PMID:26437238)
Ensembl
RGD
PMID:26437238 GO_REF:0000107 MGI:5699914 NCBI chr 8:57,264,962...57,300,010
Ensembl chr 8:57,264,962...57,300,010
JBrowse link
G Epha8 Eph receptor A8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3768579|PMID:17875921)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:17875921 GO_REF:0000024 GO_REF:0000107 MGI:3768579 NCBI chr 5:149,166,107...149,193,498
Ensembl chr 5:149,166,697...149,193,399
JBrowse link
G Fmnl1 formin-like 1 acts_upstream_of_or_within ISO (MGI:1888617|PMID:10958683) RGD PMID:10958683 MGI:1888617 NCBI chr10:88,115,876...88,143,342
Ensembl chr10:88,116,009...88,143,357
JBrowse link
G Itga11 integrin subunit alpha 11 involved_in
acts_upstream_of_or_within
ISO (PMID:11518510)
(MGI:3051941|PMID:15183724)
RGD PMID:11518510 PMID:15183724 MGI:3051941 NCBI chr 8:63,145,950...63,254,717
Ensembl chr 8:63,146,001...63,254,407
JBrowse link
G Itga2 integrin subunit alpha 2 involved_in ISO (PMID:11518510) RGD PMID:11518510 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481
JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO (MGI:3051941|PMID:15183724) RGD PMID:15183724 MGI:3051941 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
G Snai2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:2447175 (MGI:3808643|PMID:18663143) RGD PMID:18663143 MGI:3808643 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
G Ston1 stonin 1 acts_upstream_of_or_within ISO MGI:2153093|MGI:5788726 (MGI:5699914|PMID:26437238) RGD PMID:26437238 MGI:5699914 NCBI chr 6:5,843,186...5,892,557
Ensembl chr 6:5,843,185...5,892,449
JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 involved_in ISO
IEA
(PMID:15207848)
GO_REF:0000107
RGD
Ensembl
PMID:15207848 GO_REF:0000107 NCBI chr11:10,580,863...11,621,672
Ensembl chr11:10,580,908...11,620,203
JBrowse link
G Slit2 slit guidance ligand 2 involved_in ISO
IEA
(PMID:15207848)
GO_REF:0000107
RGD
Ensembl
PMID:15207848 GO_REF:0000107 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948
JBrowse link
motogenic signaling involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:20083104 RGD:2325172 NCBI chr16:66,492,445...66,546,731
Ensembl chr16:66,494,042...66,547,350
JBrowse link
negative regulation of cell adhesion involved in substrate-bound cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1b ATP synthase F1 subunit beta involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3719337|PMID:17612527)
Ensembl
RGD
PMID:17612527 GO_REF:0000107 MGI:3719337 NCBI chr 7:515,454...521,858
Ensembl chr 7:515,460...567,273
JBrowse link
G Itgb1bp1 integrin subunit beta 1 binding protein 1 involved_in ISO (MGI:5486544|PMID:18227284) RGD PMID:18227284 MGI:5486544 NCBI chr 6:40,820,693...40,836,074
Ensembl chr 6:40,821,339...40,836,037
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
JBrowse link
G Snai2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:2447175 (MGI:3808643|PMID:18663143) RGD PMID:18663143 MGI:3808643 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
positive regulation of fibronectin-dependent thymocyte migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 involved_in ISO (MGI:4836302|PMID:20856819) RGD PMID:20856819 MGI:4836302 NCBI chr 1:194,776,559...194,789,330
Ensembl chr 1:194,770,060...194,788,801
JBrowse link
positive regulation of substrate-dependent cell migration, cell attachment to substrate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbln1 fibulin 1 involved_in ISO (PMID:25834989) RGD PMID:25834989 NCBI chr 7:116,310,582...116,390,075
Ensembl chr 7:116,310,582...116,390,075
JBrowse link
G Fn1 fibronectin 1 involved_in ISO
IEA
(PMID:25834989)
GO_REF:0000107
RGD
Ensembl
PMID:25834989 GO_REF:0000107 NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
JBrowse link
G Stk4 serine/threonine kinase 4 involved_in ISO (MGI:3821942|PMID:19073936) RGD PMID:19073936 MGI:3821942 NCBI chr 3:152,745,958...152,827,747
Ensembl chr 3:152,745,681...152,827,744
JBrowse link
substrate-dependent cell migration, cell attachment to substrate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of_or_within ISO MGI:2662475 (MGI:6219093|PMID:26585507) RGD PMID:26585507 MGI:6219093 NCBI chr11:84,173,628...84,269,374
Ensembl chr11:84,173,526...84,269,364
JBrowse link
G Tnfrsf12a TNF receptor superfamily member 12A acts_upstream_of_or_within ISO (MGI:1347374|PMID:10551889) RGD PMID:10551889 MGI:1347374 NCBI chr10:12,707,077...12,709,071
Ensembl chr10:12,689,890...12,709,045
JBrowse link
substrate-dependent cell migration, cell contraction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc9 ATP binding cassette subfamily C member 9 NAS RGD PMID:11967023 RGD:728123 NCBI chr 4:175,531,854...175,655,849
Ensembl chr 4:175,532,547...175,655,356
JBrowse link
substrate-dependent cell migration, cell extension term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:109601|MGI:99695 (MGI:3847812|PMID:19414610) RGD PMID:19414610 MGI:3847812 NCBI chr13:68,673,702...68,839,742
Ensembl chr13:68,673,722...68,839,742
JBrowse link
G Cttn cortactin acts_upstream_of_or_within ISO MGI:109601|MGI:87860 (MGI:3847812|PMID:19414610) RGD PMID:19414610 MGI:3847812 NCBI chr 1:199,599,710...199,635,254
Ensembl chr 1:199,599,710...199,635,164
JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445 (MGI:3042323|PMID:14699073) RGD PMID:14699073 MGI:3042323 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165
JBrowse link
G Nck1 NCK adaptor protein 1 acts_upstream_of_or_within ISO MGI:87860|MGI:99695 (MGI:3847812|PMID:19414610) RGD PMID:19414610 MGI:3847812 NCBI chr 8:101,018,610...101,079,237
Ensembl chr 8:101,018,702...101,079,300
JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:24863063) RGD PMID:24863063 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Ntn1 netrin 1 involved_in IDA PMID:23453953 UniProt PMID:23453953 RGD:10054078 NCBI chr10:52,899,933...53,098,591
Ensembl chr10:52,899,934...53,085,326
JBrowse link
G P2ry12 purinergic receptor P2Y12 involved_in ISS
ISO
GO_REF:0000024
(MGI:3693016|PMID:17115040)
ParkinsonsUK-UCL
RGD
PMID:17115040 GO_REF:0000024 MGI:3693016 NCBI chr 2:143,481,468...143,523,340
Ensembl chr 2:143,481,430...143,523,361
JBrowse link
G Shtn1 shootin 1 involved_in IDA PMID:23453953 UniProt PMID:23453953 RGD:10054078 NCBI chr 1:258,121,966...258,225,861
Ensembl chr 1:258,121,968...258,228,265
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    locomotion 1984
      cell motility 1792
        cell migration 1591
          substrate-dependent cell migration 31
            extracellular matrix-dependent thymocyte migration + 1
            negative regulation of cell adhesion involved in substrate-bound cell migration + 4
            substrate-dependent cell migration, cell attachment to substrate + 6
            substrate-dependent cell migration, cell contraction 1
            substrate-dependent cell migration, cell extension 8
            substrate-dependent cerebral cortex tangential migration + 3
Path 2
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      movement of cell or subcellular component 2226
        cell motility 1792
          cell migration 1591
            substrate-dependent cell migration 31
              extracellular matrix-dependent thymocyte migration + 1
              negative regulation of cell adhesion involved in substrate-bound cell migration + 4
              substrate-dependent cell migration, cell attachment to substrate + 6
              substrate-dependent cell migration, cell contraction 1
              substrate-dependent cell migration, cell extension 8
              substrate-dependent cerebral cortex tangential migration + 3
paths to the root