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ONTOLOGY REPORT - ANNOTATIONS

Term:phagocytosis, engulfment
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Accession:GO:0006911 term browser browse the term
Definition:The internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis, including the membrane and cytoskeletal processes required, which involves one of three mechanisms: zippering of pseudopods around a target via repeated receptor-ligand interactions, sinking of the target directly into plasma membrane of the phagocytosing cell, or induced uptake via an enhanced membrane ruffling of the phagocytosing cell similar to macropinocytosis.
Synonyms:related_synonym: phagosome biosynthesis;   phagosome formation


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phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP-binding cassette, sub-family A member 1 acts_upstream_of_or_within IMP (PMID:10878804) MGI PMID:10878804 NCBI chr 4:53,030,789...53,159,988
Ensembl chr 4:53,030,787...53,159,895 		JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in IMP (MGI:5908515|PMID:26838550) UniProt PMID:26838550 MGI:5908515 NCBI chr15:74,388,045...74,461,314
Ensembl chr15:74,388,044...74,461,314 		JBrowse link
G Aif1 allograft inflammatory factor 1 involved_in IMP (MGI:5315376|PMID:10934045) UniProt PMID:10934045 MGI:5315376 NCBI chr17:35,389,967...35,394,977
Ensembl chr17:35,389,967...35,395,044 		JBrowse link
G Arhgap12 Rho GTPase activating protein 12 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr18:6,024,448...6,136,102
Ensembl chr18:6,024,427...6,136,098 		JBrowse link
G Arhgap25 Rho GTPase activating protein 25 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:87,435,526...87,510,241
Ensembl chr 6:87,435,527...87,510,241 		JBrowse link
G Bin2 bridging integrator 2 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr15:100,538,963...100,567,384
Ensembl chr15:100,538,958...100,567,434 		JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:137,047,011...137,085,007
Ensembl chr 4:137,047,007...137,085,031 		JBrowse link
G Clcn2 chloride channel, voltage-sensitive 2 involved_in ISO (PMID:36964785) UniProt PMID:36964785 NCBI chr16:20,521,185...20,536,496
Ensembl chr16:20,521,714...20,536,496 		JBrowse link
G Clcn3 chloride channel, voltage-sensitive 3 acts_upstream_of_or_within IMP (PMID:16522634) MGI PMID:16522634 NCBI chr 8:61,363,423...61,436,351
Ensembl chr 8:61,363,423...61,436,334 		JBrowse link
G Clec7a C-type lectin domain family 7, member a acts_upstream_of_or_within IDA (PMID:14707091) MGI PMID:14707091 NCBI chr 6:129,438,554...129,449,748
Ensembl chr 6:129,438,554...129,449,742 		JBrowse link
G Dppa1 developmental pluripotency associated 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:46,497,837...46,520,249
Ensembl chr11:46,498,599...46,520,088 		JBrowse link
G Elmo1 engulfment and cell motility 1 involved_in ISS
ISO		 (MGI:2151718|PMID:11595183) UniProt
MGI		 PMID:11595183 GO_REF:0000119 MGI:2151718 MGI:4834177 NCBI chr13:20,274,677...20,792,523
Ensembl chr13:20,274,766...20,792,523 		JBrowse link
G Fcer1g Fc receptor, IgE, high affinity I, gamma polypeptide acts_upstream_of_or_within IMP (PMID:11237803), (PMID:11911823)
(PMID:11901193)		 MGI PMID:11237803 PMID:11901193 PMID:11911823 NCBI chr 1:171,057,141...171,061,918
Ensembl chr 1:171,057,141...171,061,934 		JBrowse link
G Fcgr1 Fc receptor, IgG, high affinity I acts_upstream_of_or_within IMP (PMID:11911824)
(PMID:11911823), (PMID:9551950)		 MGI PMID:9551950 PMID:11911823 PMID:11911824 NCBI chr 3:96,190,225...96,201,285
Ensembl chr 3:96,190,225...96,201,285 		JBrowse link
G Fcgr2b Fc receptor, IgG, low affinity IIb acts_upstream_of_or_within IDA (PMID:8769481) MGI PMID:8769481 NCBI chr 1:170,786,186...170,804,141
Ensembl chr 1:170,786,186...170,804,116 		JBrowse link
G Fcgr3 Fc receptor, IgG, low affinity III acts_upstream_of_or_within IMP (PMID:8769481), (PMID:9743367), (PMID:9834201) MGI PMID:8769481 PMID:9743367 PMID:9834201 NCBI chr 1:170,878,738...170,893,477
Ensembl chr 1:170,878,743...170,892,504 		JBrowse link
G Gsn gelsolin involved_in IMP (MGI:5619440|PMID:23325791) UniProt PMID:23325791 MGI:5619440 NCBI chr 2:35,146,371...35,197,914
Ensembl chr 2:35,146,392...35,197,904 		JBrowse link
G Gulp1 GULP, engulfment adaptor PTB domain containing 1 acts_upstream_of_or_within ISO (PMID:11729193) MGI PMID:11729193 NCBI chr 1:44,590,540...44,835,998
Ensembl chr 1:44,590,671...44,835,998 		JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:18414680 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2316597 NCBI chr11:46,630,644...46,670,405
Ensembl chr11:46,625,907...46,670,405 		JBrowse link
G Igh-8 immunoglobulin heavy chain 8 (heavy chain of IgG3) acts_upstream_of_or_within IDA (PMID:11901193), (PMID:11911823), (PMID:9551950) MGI PMID:9551950 PMID:11901193 PMID:11911823
G Ighg1 immunoglobulin heavy constant gamma 1 (G1m marker) acts_upstream_of_or_within IDA (PMID:11901193), (PMID:11911823), (PMID:11911824), (PMID:8769481), (PMID:9551950), (PMID:9743367), (PMID:9834201) MGI PMID:8769481 PMID:9551950 PMID:9743367 PMID:9834201 PMID:11901193 More... NCBI chr12:113,290,161...113,294,143
Ensembl chr12:113,288,860...113,294,143 		JBrowse link
G Ighg2a immunoglobulin heavy constant gamma 2A acts_upstream_of_or_within IDA (PMID:11901193), (PMID:11911823), (PMID:11911824), (PMID:8769481), (PMID:9743367), (PMID:9834201) MGI PMID:8769481 PMID:9743367 PMID:9834201 PMID:11901193 PMID:11911823 More...
G Ighg2b immunoglobulin heavy constant gamma 2B acts_upstream_of_or_within IDA (PMID:11901193), (PMID:11911824), (PMID:8769481), (PMID:9743367) MGI PMID:8769481 PMID:9743367 PMID:11901193 PMID:11911824 NCBI chr12:113,267,934...113,271,553
Ensembl chr12:113,266,585...113,271,553 		JBrowse link
G Itgam integrin alpha M involved_in IMP (MGI:5319446|PMID:22438044), (MGI:5905548|PMID:20199584), (MGI:6189359|PMID:22632727) ARUK-UCL PMID:20199584 PMID:22438044 PMID:22632727 MGI:5319446 MGI:5905548 MGI:6189359 NCBI chr 7:127,661,812...127,717,663
Ensembl chr 7:127,661,812...127,717,663 		JBrowse link
G Itgb2 integrin beta 2 involved_in IMP (MGI:5905548|PMID:20199584) ARUK-UCL PMID:20199584 MGI:5905548 NCBI chr10:77,366,164...77,401,542
Ensembl chr10:77,366,086...77,401,542 		JBrowse link
G Marco macrophage receptor with collagenous structure involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:120,402,267...120,432,753
Ensembl chr 1:120,402,267...120,432,753 		JBrowse link
G Msr1 macrophage scavenger receptor 1 involved_in IGI (MGI:5319446|PMID:22438044) ARUK-UCL PMID:22438044 MGI:5319446 NCBI chr 8:39,996,284...40,095,790
Ensembl chr 8:40,034,726...40,095,714 		JBrowse link
G Myh9 myosin, heavy polypeptide 9, non-muscle involved_in IMP (MGI:5619440|PMID:23325791) UniProt PMID:23325791 MGI:5619440 NCBI chr15:77,644,788...77,726,315
Ensembl chr15:77,644,787...77,726,375 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in IMP (MGI:5315376|PMID:10934045) UniProt PMID:10934045 MGI:5315376 NCBI chr 5:143,491,236...143,513,786
Ensembl chr 5:143,489,389...143,513,791 		JBrowse link
G Sh3bp1 SH3-domain binding protein 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:78,783,994...78,796,247
Ensembl chr15:78,783,968...78,796,251 		JBrowse link
G Siglece sialic acid binding Ig-like lectin E acts_upstream_of IMP (PMID:24227736) MGI PMID:24227736 NCBI chr 7:43,300,494...43,309,585
Ensembl chr 7:43,300,494...43,309,585 		JBrowse link
G Sirpa signal-regulatory protein alpha acts_upstream_of_or_within IDA (PMID:14634079) MGI PMID:14634079 NCBI chr 2:129,432,962...129,474,148
Ensembl chr 2:129,434,755...129,474,148 		JBrowse link
G Timd2 T cell immunoglobulin and mucin domain containing 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:46,559,787...46,597,934
Ensembl chr11:46,559,787...46,597,888 		JBrowse link
G Timd5 T cell immunoglobulin and mucin domain containing 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:46,415,078...46,428,983
Ensembl chr11:46,415,039...46,428,983 		JBrowse link
G Timd6 T cell immunoglobulin and mucin domain containing 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:46,462,340...46,480,059
Ensembl chr11:46,462,363...46,480,059 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in
acts_upstream_of_or_within		 IMP
IDA		 (MGI:5606096|PMID:24990881)
(PMID:19155473)		 UniProt
MGI		 PMID:19155473 PMID:24990881 MGI:5606096 NCBI chr17:48,653,429...48,659,304
Ensembl chr17:48,653,429...48,661,175 		JBrowse link
G Treml4 triggering receptor expressed on myeloid cells-like 4 acts_upstream_of_or_within IDA (PMID:19155473) MGI PMID:19155473 NCBI chr17:48,571,229...48,582,635
Ensembl chr17:48,571,323...48,582,388 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in ISS
ISO		 (MGI:3773785|PMID:15133481) UniProt
MGI		 PMID:15133481 GO_REF:0000096 MGI:3773785 MGI:4417868
cytoskeletal rearrangement involved in phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Timd4 T cell immunoglobulin and mucin domain containing 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:46,701,613...46,735,160
Ensembl chr11:46,701,627...46,735,159 		JBrowse link
engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in IDA
IBA
ISO		 (MGI:3764740|PMID:17960134) UniProt
GO_Central
MGI		 PMID:17960134 GO_REF:0000033 GO_REF:0000119 MGI:3764740 MGI:4834177 NCBI chr15:74,388,045...74,461,314
Ensembl chr15:74,388,044...74,461,314 		JBrowse link
G Becn1 beclin 1, autophagy related involved_in IMP (MGI:5619450|PMID:22393062) CACAO PMID:22393062 MGI:5619450 NCBI chr11:101,179,084...101,193,112
Ensembl chr11:101,176,778...101,193,112 		JBrowse link
G Megf10 multiple EGF-like-domains 10 acts_upstream_of_or_within IMP (PMID:27170117) MGI PMID:27170117 NCBI chr18:57,266,162...57,430,539
Ensembl chr18:57,266,162...57,430,539 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in IDA
IBA		 (MGI:4943793|PMID:20691665) BHF-UCL
GO_Central		 PMID:20691665 GO_REF:0000033 MGI:4943793 NCBI chr 5:143,491,236...143,513,786
Ensembl chr 5:143,489,389...143,513,791 		JBrowse link
G Rac3 Rac family small GTPase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:120,612,294...120,614,795
Ensembl chr11:120,612,296...120,614,795 		JBrowse link
G Thbs1 thrombospondin 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:117,942,357...117,957,614
Ensembl chr 2:117,942,357...117,957,614 		JBrowse link
G Xkr4 X-linked Kx blood group related 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:3,269,956...3,741,733
Ensembl chr 1:3,276,124...3,741,721 		JBrowse link
G Xkr5 X-linked Kx blood group related 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:18,974,172...19,001,126
Ensembl chr 8:18,982,745...19,000,991 		JBrowse link
G Xkr6 X-linked Kx blood group related 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:63,841,608...64,084,451
Ensembl chr14:63,843,952...64,058,258 		JBrowse link
G Xkr7 X-linked Kx blood group related 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:152,873,772...152,902,214
Ensembl chr 2:152,873,772...152,897,695 		JBrowse link
G Xkr8 X-linked Kx blood group related 8 involved_in IMP
IBA
ISO		 (MGI:6120635|PMID:29440417), (MGI:6435898|PMID:31712393) UniProt
GO_Central
MGI		 PMID:29440417 PMID:31712393 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:6120635 MGI:6435898 NCBI chr 4:132,452,212...132,459,916
Ensembl chr 4:132,452,208...132,459,857 		JBrowse link
G Xkr9 X-linked Kx blood group related 9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:13,738,962...13,772,454
Ensembl chr 1:13,738,995...13,771,947 		JBrowse link
negative regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300a CD300A molecule involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:114,780,006...114,792,772
Ensembl chr11:114,780,867...114,795,480 		JBrowse link
G Siglece sialic acid binding Ig-like lectin E acts_upstream_of_or_within IDA
IMP		 (PMID:24227736) MGI PMID:24227736 NCBI chr 7:43,300,494...43,309,585
Ensembl chr 7:43,300,494...43,309,585 		JBrowse link
positive regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP-binding cassette, sub-family A member 7 involved_in IMP (MGI:3662940|PMID:16908670) Alzheimers_University_of_Toronto PMID:16908670 MGI:3662940 NCBI chr10:79,832,328...79,851,406
Ensembl chr10:79,832,328...79,851,406 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:48,653,429...48,659,304
Ensembl chr17:48,653,429...48,661,175 		JBrowse link
positive regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor involved_in ISO RGD
MGI		 PMID:23238794 GO_REF:0000096 MGI:4417868 RGD:8696010 NCBI chr17:34,816,545...34,819,911
Ensembl chr17:34,816,836...34,819,910 		JBrowse link
G Ano6 anoctamin 6 involved_in IMP (MGI:5634870|PMID:25651887) UniProt PMID:25651887 MGI:5634870 NCBI chr15:95,688,724...95,873,353
Ensembl chr15:95,688,724...95,872,632 		JBrowse link
G Appl2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 involved_in IMP (MGI:6271154|PMID:25568335) UniProt PMID:25568335 MGI:6271154 NCBI chr10:83,435,897...83,484,741
Ensembl chr10:83,435,897...83,484,602 		JBrowse link
G C3 complement component 3 involved_in IMP
IGI		 (MGI:5319446|PMID:22438044), (MGI:6189359|PMID:22632727)
(MGI:5905548|PMID:20199584)		 ARUK-UCL PMID:20199584 PMID:22438044 PMID:22632727 MGI:5319446 MGI:5905548 MGI:6189359 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136 		JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within IMP
IDA		 (PMID:16061696) MGI PMID:16061696 NCBI chr 5:17,986,680...18,093,828
Ensembl chr 5:17,986,688...18,093,799 		JBrowse link
G F2rl1 F2R like trypsin receptor 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:95,648,226...95,661,748
Ensembl chr13:95,648,240...95,661,735 		JBrowse link
G Fcgr1 Fc receptor, IgG, high affinity I involved_in ISO RGD
MGI		 PMID:19657115 GO_REF:0000096 MGI:4417868 RGD:9685698 NCBI chr 3:96,190,225...96,201,285
Ensembl chr 3:96,190,225...96,201,285 		JBrowse link
G Gata2 GATA binding protein 2 involved_in ISO RGD
MGI		 PMID:12933836 GO_REF:0000096 MGI:4417868 RGD:632788 NCBI chr 6:88,170,873...88,184,014
Ensembl chr 6:88,170,873...88,184,014 		JBrowse link
G Itga2 integrin alpha 2 involved_in ISO RGD
MGI		 PMID:9284952 GO_REF:0000096 MGI:4417868 RGD:2307413 NCBI chr13:114,969,617...115,068,588
Ensembl chr13:114,969,617...115,068,636 		JBrowse link
G Lbp lipopolysaccharide binding protein involved_in ISO RGD
MGI		 PMID:11104656 GO_REF:0000096 MGI:4417868 RGD:9685187 NCBI chr 2:158,148,413...158,174,772
Ensembl chr 2:158,148,413...158,174,772 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IMP (MGI:3818191|PMID:19015308) UniProt PMID:19015308 MGI:3818191 NCBI chr15:103,362,219...103,411,288
Ensembl chr15:103,362,221...103,407,237 		JBrowse link
G Plcg2 phospholipase C, gamma 2 acts_upstream_of_or_within ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:118,225,014...118,361,881
Ensembl chr 8:118,225,030...118,361,881 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO RGD
MGI		 PMID:15940641 GO_REF:0000096 MGI:4417868 RGD:8553017 NCBI chr 6:115,337,828...115,467,365
Ensembl chr 6:115,337,912...115,467,360 		JBrowse link
G Rab31 RAB31, member RAS oncogene family involved_in IMP (MGI:6271154|PMID:25568335) UniProt PMID:25568335 MGI:6271154 NCBI chr17:65,958,721...66,079,747
Ensembl chr17:65,958,724...66,079,747 		JBrowse link
G Stap1 signal transducing adaptor family member 1 involved_in IDA (MGI:3831067|PMID:19100238) BHF-UCL PMID:19100238 MGI:3831067 NCBI chr 5:86,219,446...86,251,859
Ensembl chr 5:86,219,605...86,253,984 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in
acts_upstream_of		 IMP
IBA
ISO		 (MGI:6284411|PMID:29752066), (MGI:6304666|PMID:25631124) UniProt
GO_Central
MGI		 PMID:25631124 PMID:29752066 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:6284411 MGI:6304666 NCBI chr17:48,653,429...48,659,304
Ensembl chr17:48,653,429...48,661,175 		JBrowse link
regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase involved_in IMP (MGI:5436199|PMID:22503541), (MGI:5508294|PMID:11278875) UniProt PMID:11278875 PMID:22503541 MGI:5436199 MGI:5508294 NCBI chr11:70,234,973...70,279,465
Ensembl chr11:70,234,978...70,242,857 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28697
    cellular process 17623
      vesicle-mediated transport 1643
        endocytosis 769
          phagocytosis 246
            phagocytosis, engulfment 66
              cytoskeletal rearrangement involved in phagocytosis, engulfment 1
              engulfment of apoptotic cell + 15
              membrane reorganization involved in phagocytosis, engulfment 0
              negative regulation of phagocytosis, engulfment + 2
              positive regulation of phagocytosis, engulfment + 17
              regulation of phagocytosis, engulfment + 20
Path 2
Term Annotations click to browse term
  biological_process 28697
    localization 5604
      establishment of localization 4907
        transport 4593
          vesicle-mediated transport 1643
            endocytosis 769
              phagocytosis 246
                phagocytosis, engulfment 66
                  cytoskeletal rearrangement involved in phagocytosis, engulfment 1
                  engulfment of apoptotic cell + 15
                  membrane reorganization involved in phagocytosis, engulfment 0
                  negative regulation of phagocytosis, engulfment + 2
                  positive regulation of phagocytosis, engulfment + 17
                  regulation of phagocytosis, engulfment + 20
paths to the root