Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:phagocytosis, recognition
go back to main search page
Accession:GO:0006910 term browser browse the term
Definition:The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell.
Comment:Note that cell surface molecules involved in the direct binding of bacteria may be also annotated to the molecular function term 'bacterial cell surface binding ; GO:0051635'. Note that cell surface molecules involved in the direct binding to opsonins such as complement components or antibodies may be also annotated to the term 'opsonin binding ; GO:0001846'.
Synonyms:exact_synonym: recognition of phagocytosed substance by phagocytic cell


GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
 
phagocytosis, recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in ISO (MGI:4939876|PMID:21245295) UniProt PMID:21245295 MGI:4939876 NCBI chrNW_004955454:1,250,261...1,313,547
Ensembl chrNW_004955454:1,237,363...1,314,127
JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within ISO (MGI:3587138|PMID:16061696) MGI PMID:16061696 MGI:3587138 NCBI chrNW_004955410:5,003,720...5,120,903
Ensembl chrNW_004955410:5,003,668...5,075,313
JBrowse link
G Colec12 collectin subfamily member 12 involved_in ISO (PMID:11564734) UniProt PMID:11564734 NCBI chrNW_004955402:9,445,419...9,614,956
Ensembl chrNW_004955402:9,468,421...9,614,286
JBrowse link
G Mfge8 milk fat globule EGF and factor V/VIII domain containing acts_upstream_of_or_within ISO (MGI:2681272|PMID:12000961) MGI PMID:12000961 MGI:2681272 NCBI chrNW_004955416:16,092,263...16,103,097
Ensembl chrNW_004955416:16,091,684...16,103,768
JBrowse link
G Scarb1 scavenger receptor class B member 1 ISO RGD PMID:12016218 RGD:1304245 NCBI chrNW_004955482:4,813,502...4,836,479
Ensembl chrNW_004955482:4,813,955...4,837,392
JBrowse link
G Sirpa signal regulatory protein alpha acts_upstream_of_or_within ISO (MGI:2680858|PMID:14634079) MGI PMID:14634079 MGI:2680858 NCBI chrNW_004955415:13,030,752...13,072,735 JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:32514138) ARUK-UCL PMID:32514138 NCBI chrNW_004955437:7,780,886...7,785,597
Ensembl chrNW_004955437:7,780,679...7,785,697
JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within ISO (MGI:4867371|PMID:20978472)
(MGI:4441109|PMID:19837063)
MGI PMID:19837063 PMID:20978472 MGI:4441109 MGI:4867371 NCBI chrNW_004955414:23,832,741...23,919,697
Ensembl chrNW_004955414:23,898,345...23,917,952
JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within ISO (MGI:4867371|PMID:20978472)
(MGI:4441109|PMID:19837063)
MGI PMID:19837063 PMID:20978472 MGI:4441109 MGI:4867371 NCBI chrNW_004955437:3,405,218...3,417,079 JBrowse link
opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3 complement C3 involved_in ISO (PMID:6225800) ComplexPortal PMID:6225800 NCBI chrNW_004955495:2,796,601...2,824,233
Ensembl chrNW_004955495:2,796,663...2,824,697
JBrowse link
G Cd47 CD47 molecule acts_upstream_of_or_within ISO (MGI:2680858|PMID:14634079) MGI PMID:14634079 MGI:2680858 NCBI chrNW_004955427:8,704,519...8,740,962 JBrowse link
G Ptx3 pentraxin 3 acts_upstream_of_or_within ISO (MGI:3037598|PMID:14726497) MGI PMID:14726497 MGI:3037598 NCBI chrNW_004955448:8,366,795...8,373,010
Ensembl chrNW_004955448:8,366,925...8,372,411
JBrowse link
G Sftpd surfactant protein D ISO RGD PMID:19017984 RGD:4143523 NCBI chrNW_004955510:213,468...226,096
Ensembl chrNW_004955510:213,438...225,896
JBrowse link
G Spon2 spondin 2 acts_upstream_of_or_within ISO (MGI:2686801|PMID:14691481) MGI PMID:14691481 MGI:2686801 NCBI chrNW_004955514:598,840...603,390
Ensembl chrNW_004955514:596,829...604,051
JBrowse link
positive regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3 complement C3 involved_in ISO (PMID:6225800) ComplexPortal PMID:6225800 NCBI chrNW_004955495:2,796,601...2,824,233
Ensembl chrNW_004955495:2,796,663...2,824,697
JBrowse link
G Colec10 collectin subfamily member 10 involved_in ISO (PMID:24174618) ComplexPortal PMID:24174618 NCBI chrNW_004955417:24,954,969...24,994,188
Ensembl chrNW_004955417:24,954,938...24,994,188
JBrowse link
G Colec11 collectin subfamily member 11 involved_in ISO (PMID:24174618) ComplexPortal PMID:24174618 NCBI chrNW_004955487:3,778,901...3,789,852
Ensembl chrNW_004955487:3,778,858...3,790,080
JBrowse link
G Fcn1 ficolin 1 involved_in ISO (PMID:16116205) ComplexPortal PMID:16116205 NCBI chrNW_004955513:3,690,550...3,697,785
Ensembl chrNW_004955513:3,687,232...3,698,673
JBrowse link
G Fcn3 ficolin 3 involved_in ISO (PMID:11907111) ComplexPortal PMID:11907111 NCBI chrNW_004955452:6,630,548...6,635,334
Ensembl chrNW_004955452:6,630,505...6,635,235
JBrowse link
G Masp1 MBL associated serine protease 1 involved_in ISO (PMID:10679061), (PMID:11907111), (PMID:16116205), (PMID:22966085), (PMID:24174618) ComplexPortal PMID:10679061 PMID:11907111 PMID:16116205 PMID:22966085 PMID:24174618 NCBI chrNW_004955420:20,540,266...20,605,830
Ensembl chrNW_004955420:20,540,016...20,605,854
JBrowse link
G Masp2 MBL associated serine protease 2 involved_in ISO (PMID:10679061), (PMID:11907111), (PMID:16116205), (PMID:22966085), (PMID:24174618) ComplexPortal PMID:10679061 PMID:11907111 PMID:16116205 PMID:22966085 PMID:24174618 NCBI chrNW_004955486:2,641,730...2,655,125 JBrowse link
G Mbl2 mannose binding lectin 2 involved_in ISO (PMID:22966085) ComplexPortal PMID:22966085 NCBI chrNW_004955425:7,704,371...7,708,951
Ensembl chrNW_004955425:7,702,137...7,709,006
JBrowse link
G Myo18a myosin XVIIIA involved_in ISO (PMID:21123169)
(MGI:5810257|PMID:21123169)
UniProt PMID:21123169 MGI:5810257 NCBI chrNW_004955481:4,020,274...4,115,014
Ensembl chrNW_004955481:4,028,706...4,113,878
JBrowse link
G Pla2g5 phospholipase A2 group V involved_in ISO (MGI:3841317|PMID:19342668) UniProt PMID:19342668 MGI:3841317 NCBI chrNW_004955452:662,281...721,507
Ensembl chrNW_004955452:710,271...723,142
JBrowse link
recognition of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcn1 ficolin 1 involved_in ISO (PMID:15804047) UniProt PMID:15804047 NCBI chrNW_004955513:3,690,550...3,697,785
Ensembl chrNW_004955513:3,687,232...3,698,673
JBrowse link
G Fcn3 ficolin 3 involved_in ISO (PMID:15804047) UniProt PMID:15804047 NCBI chrNW_004955452:6,630,548...6,635,334
Ensembl chrNW_004955452:6,630,505...6,635,235
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase acts_upstream_of_or_within ISO (MGI:2682078|PMID:14645847)
(MGI:1855743|PMID:10811223)
MGI PMID:10811223 PMID:14645847 MGI:1855743 MGI:2682078 NCBI chrNW_004955506:5,577,735...5,588,307
Ensembl chrNW_004955506:5,577,437...5,588,372
JBrowse link
G Megf10 multiple EGF like domains 10 acts_upstream_of_or_within ISO (MGI:4414741|PMID:19915564) MGI PMID:19915564 MGI:4414741 NCBI chrNW_004955415:393,642...513,157
Ensembl chrNW_004955415:335,012...513,891
JBrowse link
G Pear1 platelet endothelial aggregation receptor 1 acts_upstream_of_or_within ISO (MGI:4414741|PMID:19915564) MGI PMID:19915564 MGI:4414741 NCBI chrNW_004955545:2,958,334...2,977,146
Ensembl chrNW_004955545:2,961,726...2,977,146
JBrowse link
G Scarb1 scavenger receptor class B member 1 involved_in ISO (PMID:9211901)
PMID:12016218
BHF-UCL PMID:9211901 PMID:12016218 RGD:1304245 NCBI chrNW_004955482:4,813,502...4,836,479
Ensembl chrNW_004955482:4,813,955...4,837,392
JBrowse link
regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C4bpa complement component 4 binding protein alpha involved_in ISO (PMID:22333221) BHF-UCL PMID:22333221 NCBI chrNW_004955406:42,613,659...42,641,918
Ensembl chrNW_004955406:42,613,607...42,641,670
JBrowse link
G C4bpb complement component 4 binding protein beta involved_in ISO (PMID:22333221) BHF-UCL PMID:22333221 NCBI chrNW_004955406:42,601,164...42,608,912 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12234
    cellular process 11384
      cell recognition 122
        phagocytosis, recognition 28
          opsonization + 16
          recognition of apoptotic cell 6
Path 2
Term Annotations click to browse term
  biological_process 12234
    localization 4153
      establishment of localization 3534
        transport 3372
          vesicle-mediated transport 1180
            endocytosis 441
              phagocytosis, recognition 28
                opsonization + 16
                recognition of apoptotic cell 6
paths to the root