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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle targeting
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Accession:GO:0006903 term browser browse the term
Definition:The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo.


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vesicle targeting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within ISO MGI:4360696 (MGI:4461813|PMID:20592197) RGD PMID:20592197 MGI:4461813 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 IDA RGD PMID:8626580 RGD:724726 NCBI chr 3:111,354,506...111,389,998
Ensembl chr 3:111,354,506...111,389,989
JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:24859005) RGD PMID:24859005 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO
IEA
(PMID:24859005)
GO_REF:0000107
RGD
Ensembl
PMID:24859005 GO_REF:0000107 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Exoc4 exocyst complex component 4 involved_in TAS PMID:12738960 UniProt PMID:12738960, PMID:12738960 RGD:8554028, RGD:8554028 NCBI chr 4:60,549,128...61,358,305
Ensembl chr 4:60,549,197...61,355,994
JBrowse link
G Map4k2 mitogen activated protein kinase kinase kinase kinase 2 involved_in ISO (MGI:83726|PMID:8643544) RGD PMID:8643544 MGI:83726 NCBI chr 1:221,710,622...221,726,274
Ensembl chr 1:221,710,670...221,725,656
JBrowse link
G Myh9 myosin, heavy chain 9 involved_in ISO (PMID:18504258) RGD PMID:18504258 NCBI chr 7:118,740,005...118,792,507
Ensembl chr 7:118,741,110...118,792,625
JBrowse link
G Stx2 syntaxin 2 TAS RGD PMID:10564647, PMID:8938452 RGD:1298910, RGD:728629 NCBI chr12:31,324,203...31,360,249
Ensembl chr12:31,335,372...31,360,254
JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 involved_in NAS PMID:8663407 RGD
HGNC-UCL
PMID:8663407, PMID:8663407 RGD:68840, RGD:68840 NCBI chr 6:109,169,739...109,205,004
Ensembl chr 6:109,169,741...109,205,004
JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 involved_in NAS PMID:8663407 HGNC
HGNC-UCL
PMID:8663407, PMID:8663407 RGD:68840, RGD:68840 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297
JBrowse link
G Ykt6 YKT6 v-SNARE homolog involved_in ISO
ISS
(PMID:9211930) RGD PMID:9211930, PMID:9211930, PMID:9211930 RGD:8553660, RGD:8553660 NCBI chr14:86,196,018...86,207,057
Ensembl chr14:86,195,892...86,205,712
JBrowse link
COPI coating of Golgi vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgap2 ADP-ribosylation factor GTPase activating protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:80,081,541...80,093,659
Ensembl chr 3:80,081,647...80,093,658
JBrowse link
G Arfgap3 ADP-ribosylation factor GTPase activating protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:124,149,665...124,198,298
Ensembl chr 7:124,149,751...124,198,200
JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 involved_in ISO (PMID:12047556), (PMID:17956946) RGD PMID:12047556 PMID:17956946 NCBI chr 1:265,904,616...266,033,107
Ensembl chr 1:265,904,566...266,033,156
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 involved_in ISO
IBA
(PMID:18287528)
PMID:21873635
RGD PMID:18287528, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:9,560,735...9,565,249
Ensembl chr17:9,560,761...9,565,249
JBrowse link
COPI-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmed10 transmembrane p24 trafficking protein 10 involved_in ISO
ISS
(PMID:10052452)
GO_REF:0000024
RGD
UniProt
PMID:10052452 GO_REF:0000024 NCBI chr 6:109,169,739...109,205,004
Ensembl chr 6:109,169,741...109,205,004
JBrowse link
COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22358839)
Ensembl
UniProt
RGD
PMID:22358839 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Klhl12 kelch-like family member 12 involved_in IEA
ISS
ISO
IBA
GO_REF:0000107
GO_REF:0000024
(PMID:22358839), (PMID:27716508)
PMID:21873635
Ensembl
UniProt
RGD
PMID:22358839 PMID:27716508, PMID:21873635, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr13:51,280,933...51,314,753
Ensembl chr13:51,282,684...51,314,797
JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO
ISS
(PMID:27716508)
GO_REF:0000024
RGD
UniProt
PMID:27716508 GO_REF:0000024 NCBI chr 1:31,576,183...31,591,852
Ensembl chr 1:31,576,183...31,591,849
JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISO
ISS
IBA
(PMID:27716508)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:27716508, PMID:21873635, PMID:21873635 GO_REF:0000024, RGD:13792537, RGD:13792537 NCBI chr 5:148,320,610...148,343,876
Ensembl chr 5:148,320,438...148,343,886
JBrowse link
G Preb prolactin regulatory element binding involved_in IDA PMID:11422940 UniProt PMID:11422940, PMID:11422940 RGD:11344947, RGD:11344947 NCBI chr 6:26,784,088...26,787,875
Ensembl chr 6:26,784,088...26,787,874
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:3,856,218...3,890,785
Ensembl chr 3:3,856,218...3,890,758
JBrowse link
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr13:75,153,074...75,216,941
Ensembl chr13:75,175,254...75,216,941
JBrowse link
G Tfg trafficking from ER to golgi regulator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:46,180,189...46,206,723
Ensembl chr11:46,179,940...46,206,721
JBrowse link
regulation of COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk15 mitogen-activated protein kinase 15 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:24618899)
UniProt
Ensembl
RGD
PMID:24618899 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:117,041,287...117,061,799
Ensembl chr 7:117,055,395...117,061,047
JBrowse link
G Preb prolactin regulatory element binding involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 6:26,784,088...26,787,875
Ensembl chr 6:26,784,088...26,787,874
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:37,215,989...37,245,603
Ensembl chr10:37,215,937...37,245,658
JBrowse link
regulation of vesicle targeting, to, from or within Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gosr1 golgi SNAP receptor complex member 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:63,405,526...63,442,257
Ensembl chr10:63,405,586...63,442,250
JBrowse link
synaptic vesicle targeting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3694190|PMID:10892652)
UniProt
RGD
PMID:10892652 GO_REF:0000024 MGI:3694190 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) involved_in NAS PMID:10707984 UniProt PMID:10707984, PMID:10707984 RGD:69383, RGD:69383 NCBI chr 4:16,454,904...17,058,921
Ensembl chr 4:16,454,904...17,058,921
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (MGI:2664026|PMID:12805290) RGD PMID:12805290 MGI:2664026 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Scrib scribble planar cell polarity protein involved_in ISO (MGI:4365512|PMID:19458197) RGD PMID:19458197 MGI:4365512 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
vesicle targeting, to, from or within Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmed10 transmembrane p24 trafficking protein 10 acts_upstream_of_or_within
involved_in
IEP
ISO
PMID:17101722
(PMID:17101722)
RGD PMID:17101722, PMID:17101722, PMID:17101722 RGD:2317246, RGD:2317246 NCBI chr 6:109,169,739...109,205,004
Ensembl chr 6:109,169,741...109,205,004
JBrowse link
vesicle targeting, trans-Golgi to endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1ar adaptor-related protein complex 1 associated regulatory protein involved_in ISO
IBA
(PMID:19706427)
PMID:21873635
RGD PMID:19706427, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:232,146,418...232,178,813
Ensembl chr 2:232,147,690...232,178,671
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:15020712) RGD PMID:15020712 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525
JBrowse link
vesicle targeting, trans-Golgi to periciliary membrane compartment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep19 centrosomal protein 19 involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:28659385)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:28659385, PMID:21873635, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537, RGD:13792537 NCBI chr11:71,921,713...71,938,335
Ensembl chr11:71,921,716...71,938,165
JBrowse link
vesicle tethering involved in exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 involved_in IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr 4:60,549,128...61,358,305
Ensembl chr 4:60,549,197...61,355,994
JBrowse link
vesicle tethering to endoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stard3 StAR-related lipid transfer domain containing 3 involved_in ISO (PMID:24105263), (PMID:28377464) RGD PMID:24105263 PMID:28377464 NCBI chr10:86,313,430...86,335,868
Ensembl chr10:86,313,383...86,335,923
JBrowse link
G Stard3nl STARD3 N-terminal like involved_in ISO (PMID:24105263) RGD PMID:24105263 NCBI chr17:47,662,553...47,696,453
Ensembl chr17:47,662,532...47,696,444
JBrowse link
vesicle tethering to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam91a1 family with sequence similarity 91, member A1 involved_in ISO
IBA
(PMID:29426865)
PMID:21873635
RGD PMID:29426865, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:98,302,803...98,341,201
Ensembl chr 7:98,302,953...98,342,367
JBrowse link
G RGD1310429 similar to Protein Njmu-R1 involved_in ISO
IBA
(PMID:29426865)
PMID:21873635
RGD PMID:29426865, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr10:67,738,131...67,751,049
Ensembl chr10:67,739,103...67,751,002
JBrowse link
G Tbc1d23 TBC1 domain family, member 23 involved_in ISO
IBA
(PMID:29426865)
PMID:21873635
RGD PMID:29426865, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr11:45,401,396...45,459,841
Ensembl chr11:45,401,403...45,459,821
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 involved_in ISO (PMID:25473115) RGD PMID:25473115 NCBI chr 6:125,741,520...125,812,926
Ensembl chr 6:125,742,796...125,812,517
JBrowse link
G Wdr11 WD repeat domain 11 involved_in ISO (PMID:29426865) RGD PMID:29426865 NCBI chr 1:202,770,810...202,816,336
Ensembl chr 1:202,770,775...202,816,334
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20082
    cellular process 18900
      vesicle targeting 40
        contractile vacuole tethering involved in discharge 0
        synaptic vesicle targeting 4
        vesicle targeting to fusome 0
        vesicle targeting, plasma membrane to endosome + 0
        vesicle targeting, to, from or within Golgi + 19
        vesicle tethering + 8
Path 2
Term Annotations click to browse term
  biological_process 20082
    localization 6506
      cellular localization 3001
        organelle localization 583
          vesicle localization 178
            establishment of vesicle localization 159
              vesicle targeting 40
                contractile vacuole tethering involved in discharge 0
                synaptic vesicle targeting 4
                vesicle targeting to fusome 0
                vesicle targeting, plasma membrane to endosome + 0
                vesicle targeting, to, from or within Golgi + 19
                vesicle tethering + 8
paths to the root