Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:protoporphyrinogen IX biosynthetic process
go back to main search page
Accession:GO:0006782 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.
Synonyms:exact_synonym: protoporphyrinogen IX anabolism;   protoporphyrinogen IX biosynthesis;   protoporphyrinogen IX formation;   protoporphyrinogen IX synthesis


show annotations for term's descendants           Sort by:
protoporphyrinogen IX biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in IEA UniProt GO_REF:0000041 NCBI chr11:67,736,643...67,752,399
Ensembl chr11:67,741,390...67,752,321 		JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr20:37,552,813...37,566,417
Ensembl chr20:37,552,814...37,566,638 		JBrowse link
G ALAS2 5'-aminolevulinate synthase 2 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr  X:46,703,477...46,731,767
Ensembl chr  X:46,703,477...46,723,529 		JBrowse link
G CPOX coproporphyrinogen oxidase involved_in ISO
IEA		 RGD
UniProt
TreeGrafter		 PMID:3814086 GO_REF:0000041 GO_REF:0000118 RGD:4145128 NCBI chr33:5,446,022...5,459,152
Ensembl chr33:5,447,414...5,459,461 		JBrowse link
G HMBS hydroxymethylbilane synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr 5:14,767,306...14,775,205
Ensembl chr 5:14,767,666...14,775,082 		JBrowse link
G IREB2 iron responsive element binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15831703) Ensembl
MGI		 PMID:15831703 GO_REF:0000107 NCBI chr13:38,398,445...38,441,128
Ensembl chr13:38,400,591...38,441,015 		JBrowse link
G PPOX protoporphyrinogen oxidase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr38:21,306,973...21,310,892
Ensembl chr38:21,306,974...21,311,012 		JBrowse link
G UROD uroporphyrinogen decarboxylase involved_in IEA UniProt GO_REF:0000041 NCBI chr15:15,313,808...15,317,130
Ensembl chr15:15,312,674...15,320,010 		JBrowse link
G UROS uroporphyrinogen III synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr28:34,952,074...34,983,532
Ensembl chr28:34,948,003...34,983,532 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    metabolic process 10998
      pigment metabolic process 68
        heme metabolic process 32
          heme biosynthetic process 25
            protoporphyrinogen IX biosynthetic process 9
              protoporphyrinogen IX biosynthetic process from glutamate 0
              protoporphyrinogen IX biosynthetic process from glycine 0
Path 2
Term Annotations click to browse term
  biological_process 17917
    metabolic process 10998
      organic substance metabolic process 10554
        organonitrogen compound metabolic process 5384
          tetrapyrrole metabolic process 49
            porphyrin-containing compound metabolic process 39
              heme metabolic process 32
                heme biosynthetic process 25
                  protoporphyrinogen IX biosynthetic process 9
                    protoporphyrinogen IX biosynthetic process from glutamate 0
                    protoporphyrinogen IX biosynthetic process from glycine 0
paths to the root