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ONTOLOGY REPORT - ANNOTATIONS

Term:vitamin metabolic process
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Accession:GO:0006766 term browser browse the term
Definition:The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems.
Synonyms:exact_synonym: vitamin metabolism
 xref: Reactome:R-HSA-211916 "Vitamins"


show annotations for term's descendants           Sort by:
vitamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 involved_in TAS Reactome Reactome:R-HSA-211916 NCBI chr20:54,143,538...54,173,986
Ensembl chr20:54,153,446...54,173,986 		JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in TAS Reactome Reactome:R-HSA-211916 NCBI chr10:93,073,475...93,077,885
Ensembl chr10:93,073,475...93,077,885 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in TAS Reactome Reactome:R-HSA-211916 NCBI chr 2:72,129,238...72,147,862
Ensembl chr 2:72,129,238...72,147,862 		JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in TAS Reactome Reactome:R-HSA-211916 NCBI chr10:93,060,798...93,069,540
Ensembl chr10:93,060,798...93,069,540 		JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in TAS Reactome Reactome:R-HSA-211916 NCBI chr12:57,762,334...57,767,078
Ensembl chr12:57,762,334...57,768,986 		JBrowse link
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 involved_in TAS Reactome Reactome:R-HSA-211916 NCBI chr11:14,877,440...14,892,443
Ensembl chr11:14,877,440...14,892,231 		JBrowse link
G LRP2 LDL receptor related protein 2 involved_in ISS HGNC-UCL GO_REF:0000024 NCBI chr 2:169,127,109...169,362,534
Ensembl chr 2:169,127,109...169,362,534 		JBrowse link
biotin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BTD biotinidase involved_in
acts_upstream_of_or_within 		TAS
ISO
IBA 		(PMID:21051254) Reactome
MGI
GO_Central		 PMID:21051254 GO_REF:0000033 Reactome:R-HSA-196780 NCBI chr 3:15,601,361...15,722,516
Ensembl chr 3:15,601,341...15,722,311 		JBrowse link
G HLCS holocarboxylase synthetase involved_in TAS
IEA 		Reactome
UniProt		 GO_REF:0000117 Reactome:R-HSA-196780 NCBI chr21:36,748,625...36,990,211
Ensembl chr21:36,748,626...36,990,236 		JBrowse link
G MCCC1 methylcrotonyl-CoA carboxylase subunit 1 involved_in NAS (PMID:11401427), (PMID:22869039) UniProt PMID:11401427 PMID:22869039 NCBI chr 3:183,015,218...183,116,196
Ensembl chr 3:183,015,218...183,116,075 		JBrowse link
G SLC5A6 solute carrier family 5 member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:27,199,587...27,212,787
Ensembl chr 2:27,199,587...27,212,958 		JBrowse link
calcitriol biosynthetic process from calciol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 involved_in IEA GOC GO_REF:0000108 NCBI chr20:54,143,538...54,173,986
Ensembl chr20:54,153,446...54,173,986 		JBrowse link
G CYP27A1 cytochrome P450 family 27 subfamily A member 1 involved_in IDA
IBA 		(PMID:15465040) UniProt
GO_Central		 PMID:15465040 GO_REF:0000033 NCBI chr 2:218,782,147...218,815,293
Ensembl chr 2:218,781,749...218,815,293 		JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA
IBA
IDA 		(PMID:15795327), (PMID:16549446), (PMID:17023519), (PMID:22862690), (PMID:9415400) Ensembl
GO_Central
BHF-UCL		 PMID:9415400 PMID:15795327 PMID:16549446 PMID:17023519 PMID:22862690 GO_REF:0000033 GO_REF:0000107 NCBI chr12:57,762,334...57,767,078
Ensembl chr12:57,762,334...57,768,986 		JBrowse link
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 involved_in IDA (PMID:15465040), (PMID:18511070) UniProt PMID:15465040 PMID:18511070 NCBI chr11:14,877,440...14,892,443
Ensembl chr11:14,877,440...14,892,231 		JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:99,756,967...99,784,184
Ensembl chr 7:99,756,960...99,784,248 		JBrowse link
cobalamin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUBN cubilin ISO RGD PMID:14576052 RGD:8554807 NCBI chr10:16,823,966...17,129,811
Ensembl chr10:16,823,966...17,129,811 		JBrowse link
cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCD4 ATP binding cassette subfamily D member 4 involved_in IDA
IMP 		(PMID:33845046)
(PMID:22922874) 		MGI
UniProt		 PMID:22922874 PMID:33845046 NCBI chr14:74,285,269...74,302,934
Ensembl chr14:74,285,269...74,303,055 		JBrowse link
G AMN amnion associated transmembrane protein involved_in IDA (PMID:14576052) MGI PMID:14576052 NCBI chr14:102,922,663...102,930,842
Ensembl chr14:102,922,663...102,933,596 		JBrowse link
G CUBN cubilin involved_in IDA (PMID:14576052) MGI PMID:14576052 NCBI chr10:16,823,966...17,129,811
Ensembl chr10:16,823,966...17,129,811 		JBrowse link
G MMAA metabolism of cobalamin associated A involved_in IDA
TAS 		(PMID:31056463)
(PMID:28497574) 		MGI
UniProt		 PMID:28497574 PMID:31056463 Reactome:R-HSA-9759218 NCBI chr 4:145,619,385...145,660,033
Ensembl chr 4:145,599,042...145,660,033 		JBrowse link
G MMAB metabolism of cobalamin associated B involved_in IDA
IEA
TAS 		(PMID:12514191)
(PMID:28497574) 		UniProt
Reactome		 PMID:12514191 PMID:28497574 GO_REF:0000117 Reactome:R-HSA-9759218 NCBI chr12:109,553,715...109,573,504
Ensembl chr12:109,553,715...109,573,580 		JBrowse link
G MMACHC metabolism of cobalamin associated C involved_in IDA
IMP
IBA
TAS 		(PMID:19700356), (PMID:22642810)
(PMID:23825108) 		UniProt
BHF-UCL
GO_Central
Reactome		 PMID:19700356 PMID:22642810 PMID:23825108 GO_REF:0000033 Reactome:R-HSA-9759218 NCBI chr 1:45,500,300...45,513,382
Ensembl chr 1:45,500,300...45,513,382 		JBrowse link
G MMADHC metabolism of cobalamin associated D involved_in IEA
IDA
TAS 		(PMID:22156578), (PMID:24722857) InterPro
MGI
Reactome		 PMID:22156578 PMID:24722857 GO_REF:0000002 Reactome:R-HSA-9759218 NCBI chr 2:149,569,637...149,587,775
Ensembl chr 2:149,569,637...149,587,778 		JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IEA
TAS
IMP 		(PMID:23825108) Ensembl
Reactome
BHF-UCL		 PMID:23825108 GO_REF:0000107 Reactome:R-HSA-9759218 NCBI chr 1:236,795,281...236,903,981
Ensembl chr 1:236,795,260...236,921,278 		JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in TAS
IEA 		Reactome
UniProt		 GO_REF:0000117 Reactome:R-HSA-9759218 NCBI chr 5:7,850,859...7,901,113
Ensembl chr 5:7,851,186...7,906,025 		JBrowse link
fat-soluble vitamin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEL carboxyl ester lipase involved_in NAS (PMID:9774442) UniProt PMID:9774442 NCBI chr 9:133,061,981...133,071,861
Ensembl chr 9:133,061,981...133,071,861 		JBrowse link
folic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTHFS methenyltetrahydrofolate synthetase involved_in IMP (PMID:12764149) BHF-UCL PMID:12764149 NCBI chr15:79,843,547...79,897,285
Ensembl chr15:79,833,585...79,897,379 		JBrowse link
G PM20D2 peptidase M20 domain containing 2 NOT|involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:89,093,940...89,165,565
Ensembl chr 6:89,146,055...89,165,565 		JBrowse link
folic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1L1 aldehyde dehydrogenase 1 family member L1 involved_in ISO PMID:1848231 UniProt PMID:1848231 RGD:632027 NCBI chr 3:126,103,570...126,197,945
Ensembl chr 3:126,103,562...126,197,994 		JBrowse link
G ALDH1L2 aldehyde dehydrogenase 1 family member L2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:105,019,790...105,084,458
Ensembl chr12:105,019,784...105,107,643 		JBrowse link
G DHFR dihydrofolate reductase involved_in ISS
IBA 		BHF-UCL
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:80,626,226...80,654,983
Ensembl chr 5:80,626,226...80,654,983 		JBrowse link
G DHFR2 dihydrofolate reductase 2 involved_in TAS
IBA 		Reactome
GO_Central		 GO_REF:0000033 Reactome:R-HSA-196757 NCBI chr 3:94,057,922...94,063,320
Ensembl chr 3:94,047,836...94,063,389 		JBrowse link
G DHFRP1 dihydrofolate reductase pseudogene 1 involved_in ISS
IBA 		BHF-UCL
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr18:26,167,862...26,171,357
Ensembl chr18:26,170,726...26,171,284 		JBrowse link
G FOLR1 folate receptor alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:72,189,709...72,196,323
Ensembl chr11:72,189,558...72,196,323 		JBrowse link
G FPGS folylpolyglutamate synthase involved_in TAS
NAS 		(PMID:10964921) Reactome
UniProt		 PMID:10964921 Reactome:R-HSA-196757 NCBI chr 9:127,802,858...127,814,506
Ensembl chr 9:127,794,597...127,814,494 		JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IMP
IEA
ISS 		(PMID:25633902) BHF-UCL
Ensembl		 PMID:25633902 GO_REF:0000024 GO_REF:0000107 NCBI chr14:64,388,353...64,460,025
Ensembl chr14:64,388,031...64,463,457 		JBrowse link
G MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase involved_in TAS
IEA 		Reactome
UniProt		 GO_REF:0000117 Reactome:R-HSA-196757 NCBI chr 2:74,198,615...74,217,565
Ensembl chr 2:74,186,172...74,217,565 		JBrowse link
G MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like involved_in TAS
IEA 		Reactome
UniProt		 GO_REF:0000117 Reactome:R-HSA-196757 NCBI chr 4:74,114,560...74,303,099
Ensembl chr 4:74,114,174...74,303,099 		JBrowse link
G MTHFS methenyltetrahydrofolate synthetase involved_in TAS Reactome Reactome:R-HSA-196757 NCBI chr15:79,843,547...79,897,285
Ensembl chr15:79,833,585...79,897,379 		JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISS
IEA
IDA 		(PMID:11466310) UniProt
BHF-UCL		 PMID:11466310 GO_REF:0000024 GO_REF:0000117 NCBI chr 5:7,850,859...7,901,113
Ensembl chr 5:7,851,186...7,906,025 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in IDA
TAS 		(PMID:11278996) UniProt
Reactome		 PMID:11278996 Reactome:R-HSA-196757 NCBI chr17:18,327,873...18,363,550
Ensembl chr17:18,327,873...18,363,550 		JBrowse link
G SLC19A1 solute carrier family 19 member 1 involved_in TAS Reactome Reactome:R-HSA-196757 NCBI chr21:45,502,517...45,563,025
Ensembl chr21:45,493,572...45,573,365 		JBrowse link
G SLC25A32 solute carrier family 25 member 32 involved_in TAS Reactome Reactome:R-HSA-196757 NCBI chr 8:103,398,638...103,415,107
Ensembl chr 8:103,398,635...103,415,189 		JBrowse link
G SLC46A1 solute carrier family 46 member 1 involved_in TAS Reactome Reactome:R-HSA-196757 NCBI chr17:28,394,642...28,406,592
Ensembl chr17:28,394,642...28,407,197 		JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 acts_upstream_of_or_within
involved_in 		ISO (PMID:15769935)
PMID:22820017
(PMID:20410296) 		MGI
UniProt		 PMID:15769935 PMID:20410296 PMID:22820017 RGD:13825440 NCBI chr 1:45,550,826...45,570,049
Ensembl chr 1:45,550,543...45,570,049 		JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in ISO (PMID:20410296) MGI PMID:20410296 NCBI chr 7:134,442,350...134,459,239
Ensembl chr 7:134,442,356...134,459,284 		JBrowse link
G GSTO1 glutathione S-transferase omega 1 ISO RGD PMID:9786866 RGD:70644 NCBI chr10:104,254,173...104,267,455
Ensembl chr10:104,235,356...104,267,459 		JBrowse link
G GULOP gulonolactone (L-) oxidase, pseudogene involved_in
acts_upstream_of_or_within 		ISO (PMID:10606751)
(PMID:14962674)
(PMID:10639167) 		MGI
UniProt		 PMID:10606751 PMID:10639167 PMID:14962674 NCBI chr 8:27,577,611...27,589,073
Ensembl chr 8:27,560,274...27,589,073 		JBrowse link
G RGN regucalcin involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:47,078,443...47,093,313
Ensembl chr  X:47,078,355...47,093,314 		JBrowse link
L-ascorbic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:160,115,759...160,143,591
Ensembl chr 1:160,115,759...160,143,591 		JBrowse link
G ATP1A3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO (PMID:33544780) MGI PMID:33544780 NCBI chr19:41,966,582...41,994,230
Ensembl chr19:41,966,582...41,997,497 		JBrowse link
G CLSTN3 calsyntenin 3 involved_in IDA (PMID:34673103) UniProt PMID:34673103 NCBI chr12:7,129,093...7,158,945
Ensembl chr12:7,129,698...7,158,945 		JBrowse link
G ERO1A endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:52,639,915...52,695,558
Ensembl chr14:52,639,915...52,695,900 		JBrowse link
G GCLC glutamate-cysteine ligase catalytic subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:53,497,341...53,545,101
Ensembl chr 6:53,497,341...53,616,970 		JBrowse link
G GSTO1 glutathione S-transferase omega 1 involved_in IDA
IEA
IBA 		(PMID:11511179) UniProt
GO_Central		 PMID:11511179 GO_REF:0000033 GO_REF:0000117 NCBI chr10:104,254,173...104,267,455
Ensembl chr10:104,235,356...104,267,459 		JBrowse link
G GSTO2 glutathione S-transferase omega 2 involved_in IDA
IEA
IBA 		(PMID:15970797) UniProt
GO_Central		 PMID:15970797 GO_REF:0000033 GO_REF:0000117 NCBI chr10:104,269,184...104,304,950
Ensembl chr10:104,268,873...104,304,950 		JBrowse link
G MIR125A microRNA 125a ISO RGD PMID:27085842 RGD:26884454 NCBI chr19:51,693,254...51,693,339
Ensembl chr19:51,693,254...51,693,339 		JBrowse link
G SELENON selenoprotein N acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:25,800,193...25,818,221
Ensembl chr 1:25,800,193...25,818,221 		JBrowse link
G SLC23A1 solute carrier family 23 member 1 involved_in TAS Reactome Reactome:R-HSA-196836 NCBI chr 5:139,367,196...139,385,676
Ensembl chr 5:139,367,196...139,384,553 		JBrowse link
G SLC23A2 solute carrier family 23 member 2 involved_in ISO
IEA
TAS
NAS 		(PMID:10556521) RGD
Ensembl
Reactome
UniProt		 PMID:10331392 PMID:10556521 GO_REF:0000107 RGD:634186 Reactome:R-HSA-196836 NCBI chr20:4,852,358...5,010,313
Ensembl chr20:4,852,356...5,010,293 		JBrowse link
G SLC2A1 solute carrier family 2 member 1 involved_in TAS Reactome Reactome:R-HSA-196836 NCBI chr 1:42,925,353...42,958,868
Ensembl chr 1:42,925,353...42,958,893 		JBrowse link
G SLC2A3 solute carrier family 2 member 3 involved_in TAS Reactome Reactome:R-HSA-196836 NCBI chr12:7,919,230...7,936,187
Ensembl chr12:7,919,230...8,019,007 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IDA (PMID:21851338) UniProt PMID:21851338 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686 		JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IMP (PMID:33495566) UniProt PMID:33495566 NCBI chr11:20,387,716...20,509,338
Ensembl chr11:20,387,558...20,509,338 		JBrowse link
negative regulation of vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GFI1 growth factor independent 1 transcriptional repressor acts_upstream_of IDA (PMID:15947108) BHF-UCL PMID:15947108 NCBI chr 1:92,473,043...92,486,925
Ensembl chr 1:92,473,043...92,486,925 		JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 involved_in IDA (PMID:15243130) BHF-UCL PMID:15243130 NCBI chr 4:102,501,359...102,617,302
Ensembl chr 4:102,501,330...102,617,302 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IDA
IEA 		(PMID:19502595) BHF-UCL
UniProt		 PMID:19502595 GO_REF:0000117 NCBI chr20:49,982,980...49,988,886
Ensembl chr20:49,982,980...49,988,886 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IDA
IEA 		(PMID:18485278), (PMID:19502595) BHF-UCL
UniProt		 PMID:18485278 PMID:19502595 GO_REF:0000117 NCBI chr 8:48,917,598...48,921,429
Ensembl chr 8:48,917,598...48,921,740 		JBrowse link
nicotinamide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NAMPT nicotinamide phosphoribosyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:106,248,298...106,285,888
Ensembl chr 7:106,248,298...106,285,966 		JBrowse link
G NMNAT1 nicotinamide nucleotide adenylyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,942,923...9,996,892
Ensembl chr 1:9,943,428...9,985,501 		JBrowse link
G NMNAT2 nicotinamide nucleotide adenylyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:183,248,237...183,418,380
Ensembl chr 1:183,248,237...183,418,380 		JBrowse link
G NMNAT3 nicotinamide nucleotide adenylyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:139,560,180...139,678,050
Ensembl chr 3:139,560,180...139,678,017 		JBrowse link
G NNMT nicotinamide N-methyltransferase involved_in IEA
IDA 		(PMID:21823666), (PMID:8182091) Ensembl
UniProt		 PMID:8182091 PMID:21823666 GO_REF:0000107 NCBI chr11:114,257,806...114,313,536
Ensembl chr11:114,257,787...114,313,536 		JBrowse link
pantothenate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase involved_in TAS Reactome Reactome:R-HSA-199220 NCBI chr11:106,077,662...106,098,695
Ensembl chr11:106,075,501...106,098,699 		JBrowse link
G PANK2 pantothenate kinase 2 involved_in NAS (PMID:22221393) ParkinsonsUK-UCL PMID:22221393 NCBI chr20:3,888,781...3,929,887
Ensembl chr20:3,888,839...3,929,887 		JBrowse link
G PANK4 pantothenate kinase 4 (inactive) involved_in TAS Reactome Reactome:R-HSA-199220 NCBI chr 1:2,508,537...2,526,596
Ensembl chr 1:2,508,537...2,526,597 		JBrowse link
G SLC25A16 solute carrier family 25 member 16 involved_in TAS Reactome Reactome:R-HSA-199220 NCBI chr10:68,477,998...68,527,523
Ensembl chr10:68,477,998...68,527,523 		JBrowse link
G SLC25A42 solute carrier family 25 member 42 involved_in TAS Reactome Reactome:R-HSA-199220 NCBI chr19:19,063,994...19,113,030
Ensembl chr19:19,063,994...19,113,030 		JBrowse link
G VNN1 vanin 1 involved_in IDA
IBA
TAS 		(PMID:11491533), (PMID:25478849) UniProt
GO_Central
Reactome		 PMID:11491533 PMID:25478849 GO_REF:0000033 Reactome:R-HSA-199220 NCBI chr 6:132,680,849...132,714,055
Ensembl chr 6:132,680,849...132,714,055 		JBrowse link
G VNN2 vanin 2 involved_in TAS
IBA
IDA 		(PMID:11491533) Reactome
GO_Central
BHF-UCL		 PMID:11491533 GO_REF:0000033 Reactome:R-HSA-199220 NCBI chr 6:132,743,870...132,763,455
Ensembl chr 6:132,743,870...132,763,459 		JBrowse link
G VNN3P vanin 3, pseudogene involved_in ISO (PMID:11491533) BHF-UCL PMID:11491533 NCBI chr 6:132,722,787...132,734,765
Ensembl chr 6:132,722,784...132,736,935
Ensembl chr 6:132,722,784...132,736,935 		JBrowse link
phylloquinone catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBR1 carbonyl reductase 1 ISO menadione catabolism RGD PMID:16359670 RGD:2316273 NCBI chr21:36,070,024...36,073,164
Ensembl chr21:36,069,941...36,073,166 		JBrowse link
G CBR3 carbonyl reductase 3 involved_in ISO
IEA 		menadione catabolism RGD
Ensembl		 PMID:18983987 GO_REF:0000107 RGD:2316293 NCBI chr21:36,135,079...36,146,562
Ensembl chr21:36,135,079...36,146,562 		JBrowse link
G CYP4F11 cytochrome P450 family 4 subfamily F member 11 involved_in IDA
IBA
IEA 		(PMID:24138531) UniProt
GO_Central		 PMID:24138531 GO_REF:0000033 GO_REF:0000041 NCBI chr19:15,912,377...15,934,867
Ensembl chr19:15,912,367...15,934,867 		JBrowse link
G CYP4F12 cytochrome P450 family 4 subfamily F member 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:15,673,087...15,697,174
Ensembl chr19:15,673,018...15,697,174 		JBrowse link
G CYP4F2 cytochrome P450 family 4 subfamily F member 2 involved_in IEA
IBA
IDA 		(PMID:24138531) UniProt
GO_Central		 PMID:24138531 GO_REF:0000033 GO_REF:0000041 NCBI chr19:15,878,023...15,898,074
Ensembl chr19:15,878,023...15,898,077 		JBrowse link
G CYP4F3 cytochrome P450 family 4 subfamily F member 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:15,640,897...15,662,825
Ensembl chr19:15,640,897...15,662,825 		JBrowse link
G CYP4F8 cytochrome P450 family 4 subfamily F member 8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:15,615,218...15,630,639
Ensembl chr19:15,615,218...15,630,639 		JBrowse link
phylloquinone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBIAD1 UbiA prenyltransferase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:11,273,198...11,299,574
Ensembl chr 1:11,273,198...11,296,049 		JBrowse link
positive regulation of cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLYBL citramalyl-CoA lyase involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:99,606,690...99,909,444
Ensembl chr13:99,606,669...99,909,459 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 involved_in ISO
IEA 		RGD
Ensembl		 PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281 		JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr12:56,951,431...56,957,608
Ensembl chr12:56,951,431...56,959,374 		JBrowse link
positive regulation of vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFNG interferon gamma involved_in IDA (PMID:9282826) BHF-UCL PMID:9282826 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740 		JBrowse link
G TNF tumor necrosis factor involved_in IDA (PMID:1690216) BHF-UCL PMID:1690216 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336 		JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in IEA InterPro GO_REF:0000002 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PDXK pyridoxal kinase involved_in IC
IDA
IBA
IMP
IEA 		(PMID:17766369)
(PMID:10987144), (PMID:17766369), (PMID:9099727)
(PMID:31187503) 		UniProt
GO_Central
InterPro		 PMID:9099727 PMID:10987144 PMID:17766369 PMID:31187503 GO_REF:0000002 GO_REF:0000033 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
pyridoxal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in ISO (PMID:33318193) MGI PMID:33318193 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PDXK pyridoxal kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase ISO RGD PMID:2988502 RGD:2303018 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA
IBA
IDA 		(PMID:12824491) GOC
GO_Central
CAFA		 PMID:12824491 GO_REF:0000033 GO_REF:0000108 NCBI chr17:47,941,571...47,949,308
Ensembl chr17:47,941,506...47,949,308 		JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXP pyridoxal phosphatase involved_in IDA
IEA 		(PMID:14522954), (PMID:8132548) UniProt
Ensembl		 PMID:8132548 PMID:14522954 GO_REF:0000107 NCBI chr22:37,658,723...37,666,932
Ensembl chr22:37,658,723...37,666,932 		JBrowse link
pyridoxal phosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALPL alkaline phosphatase, biomineralization associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:21,508,984...21,578,410
Ensembl chr 1:21,509,397...21,578,410 		JBrowse link
G PDXK pyridoxal kinase involved_in ISO (PMID:33318193)
(PMID:31935373) 		MGI PMID:31935373 PMID:33318193 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PDXK pyridoxal kinase involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:47,941,571...47,949,308
Ensembl chr17:47,941,506...47,949,308 		JBrowse link
pyridoxamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in ISO (PMID:31935373) MGI PMID:31935373 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PDXK pyridoxal kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:47,941,571...47,949,308
Ensembl chr17:47,941,506...47,949,308 		JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:47,941,571...47,949,308
Ensembl chr17:47,941,506...47,949,308 		JBrowse link
G PSAT1 phosphoserine aminotransferase 1 involved_in NAS (PMID:10637769) UniProt PMID:10637769 NCBI chr 9:78,297,125...78,330,093
Ensembl chr 9:78,297,125...78,330,093 		JBrowse link
regulation of cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLYBL citramalyl-CoA lyase involved_in IEA
IBA
IDA 		(PMID:29056341) Ensembl
UniProt
GO_Central		 PMID:29056341 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr13:99,606,690...99,909,444
Ensembl chr13:99,606,669...99,909,459 		JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGAT1 diacylglycerol O-acyltransferase 1 ISO RGD PMID:18000880 RGD:10400849 NCBI chr 8:144,314,584...144,326,852
Ensembl chr 8:144,314,584...144,326,910 		JBrowse link
G ISX intestine specific homeobox acts_upstream_of_or_within ISO (PMID:18093975) MGI PMID:18093975 NCBI chr22:35,066,158...35,087,387
Ensembl chr22:35,066,136...35,087,387 		JBrowse link
regulation of vitamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD320 CD320 molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:8,302,127...8,308,358
Ensembl chr19:8,302,127...8,308,358 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in IDA
IEA
IBA 		(PMID:10823918) BHF-UCL
UniProt
GO_Central		 PMID:10823918 GO_REF:0000033 GO_REF:0000117 NCBI chr10:93,073,475...93,077,885
Ensembl chr10:93,073,475...93,077,885 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO
IEA
IBA
IDA 		(PMID:10823918) RGD
UniProt
GO_Central
Ensembl
BHF-UCL		 PMID:10823918 PMID:21138835 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 RGD:6771354 NCBI chr 2:72,129,238...72,147,862
Ensembl chr 2:72,129,238...72,147,862 		JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in IDA
IBA
IEA 		(PMID:14532297) BHF-UCL
GO_Central
UniProt		 PMID:14532297 GO_REF:0000033 GO_REF:0000117 NCBI chr10:93,060,798...93,069,540
Ensembl chr10:93,060,798...93,069,540 		JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in IDA (PMID:26936974) UniProt PMID:26936974 NCBI chr 7:983,181...989,640
Ensembl chr 7:983,181...989,640 		JBrowse link
G KLF9 KLF transcription factor 9 acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr 9:70,384,604...70,414,657
Ensembl chr 9:70,384,604...70,414,657 		JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr12:53,380,176...53,416,446
Ensembl chr12:53,380,176...53,416,446 		JBrowse link
G STRAP serine/threonine kinase receptor associated protein acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr12:15,882,387...15,903,478
Ensembl chr12:15,882,387...15,903,478 		JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RFK riboflavin kinase involved_in IEA
NAS 		(PMID:12623014) InterPro
UniProt		 PMID:12623014 GO_REF:0000002 NCBI chr 9:76,385,526...76,394,426
Ensembl chr 9:76,385,526...76,394,517 		JBrowse link
riboflavin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FLAD1 flavin adenine dinucleotide synthetase 1 involved_in IEA
TAS 		Ensembl
Reactome
UniProt		 GO_REF:0000107 GO_REF:0000117 Reactome:R-HSA-196843 NCBI chr 1:154,983,344...154,993,111
Ensembl chr 1:154,983,338...154,993,111 		JBrowse link
G RFK riboflavin kinase involved_in IDA
IBA
IEA
TAS 		(PMID:19641494) UniProt
GO_Central
Reactome
Ensembl		 PMID:19641494 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 Reactome:R-HSA-196843 NCBI chr 9:76,385,526...76,394,426
Ensembl chr 9:76,385,526...76,394,517 		JBrowse link
G SLC52A1 solute carrier family 52 member 1 involved_in TAS Reactome Reactome:R-HSA-196843 NCBI chr17:5,032,602...5,042,414
Ensembl chr17:5,032,600...5,052,009 		JBrowse link
G SLC52A2 solute carrier family 52 member 2 involved_in TAS Reactome Reactome:R-HSA-196843 NCBI chr 8:144,358,552...144,361,272
Ensembl chr 8:144,333,957...144,361,286 		JBrowse link
G SLC52A3 solute carrier family 52 member 3 involved_in TAS
IEA 		Reactome
Ensembl		 GO_REF:0000107 Reactome:R-HSA-196843 NCBI chr20:760,080...780,033
Ensembl chr20:760,080...776,015 		JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC19A2 solute carrier family 19 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:169,463,909...169,485,970
Ensembl chr 1:169,463,909...169,485,944 		JBrowse link
G SLC19A3 solute carrier family 19 member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:227,683,763...227,718,028
Ensembl chr 2:227,683,763...227,718,028 		JBrowse link
G SLC25A19 solute carrier family 25 member 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,272,992...75,289,433
Ensembl chr17:75,272,981...75,289,510 		JBrowse link
G THTPA thiamine triphosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:23,511,760...23,560,271
Ensembl chr14:23,555,988...23,560,271 		JBrowse link
G TPK1 thiamin pyrophosphokinase 1 involved_in IEA
IDA
IBA 		(PMID:11342111), (PMID:38547260) UniProt
GO_Central
Ensembl
InterPro		 PMID:11342111 PMID:38547260 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:144,451,941...144,836,437
Ensembl chr 7:144,451,941...144,836,395 		JBrowse link
thiamine diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THTPA thiamine triphosphatase involved_in ISS
IBA
IEA 		UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:23,511,760...23,560,271
Ensembl chr14:23,555,988...23,560,271 		JBrowse link
thiamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACP3 acid phosphatase 3 involved_in ISS
IEA 		CAFA
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:132,317,407...132,368,302
Ensembl chr 3:132,317,369...132,368,302 		JBrowse link
G THTPA thiamine triphosphatase involved_in TAS
IEA 		(PMID:11827967) UniProt
InterPro		 PMID:11827967 GO_REF:0000002 NCBI chr14:23,511,760...23,560,271
Ensembl chr14:23,555,988...23,560,271 		JBrowse link
G TKTL1 transketolase like 1 involved_in TAS (PMID:8838793) PINC PMID:8838793 NCBI chr  X:154,295,795...154,330,350
Ensembl chr  X:154,295,795...154,330,350 		JBrowse link
G TPK1 thiamin pyrophosphokinase 1 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 7:144,451,941...144,836,437
Ensembl chr 7:144,451,941...144,836,395 		JBrowse link
thiamine-containing compound metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC19A2 solute carrier family 19 member 2 involved_in TAS Reactome Reactome:R-HSA-196819 NCBI chr 1:169,463,909...169,485,970
Ensembl chr 1:169,463,909...169,485,944 		JBrowse link
G SLC19A3 solute carrier family 19 member 3 involved_in TAS Reactome Reactome:R-HSA-196819 NCBI chr 2:227,683,763...227,718,028
Ensembl chr 2:227,683,763...227,718,028 		JBrowse link
G SLC25A19 solute carrier family 25 member 19 involved_in TAS
IEA 		Reactome
UniProt		 GO_REF:0000117 Reactome:R-HSA-196819 NCBI chr17:75,272,992...75,289,433
Ensembl chr17:75,272,981...75,289,510 		JBrowse link
G THTPA thiamine triphosphatase involved_in IEA UniProt GO_REF:0000117 NCBI chr14:23,511,760...23,560,271
Ensembl chr14:23,555,988...23,560,271 		JBrowse link
G TPK1 thiamin pyrophosphokinase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 7:144,451,941...144,836,437
Ensembl chr 7:144,451,941...144,836,395 		JBrowse link
vitamin A biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO1 beta-carotene oxygenase 1 involved_in NAS (PMID:15983114) BHF-UCL PMID:15983114 NCBI chr16:81,238,689...81,291,142
Ensembl chr16:81,238,689...81,291,142 		JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in NAS (PMID:8663198) UniProt PMID:8663198 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866 		JBrowse link
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:89,213,572...89,251,775
NCBI chr10:89,330,997...89,342,689
NCBI chr10:89,405,329...89,421,494
Ensembl chr10:89,213,569...89,414,557 		JBrowse link
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within 		ISS
IEA
IBA 		UniProt
Ensembl
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:154,740,838...154,753,120
Ensembl chr 4:154,626,945...154,753,120 		JBrowse link
G RBP1 retinol binding protein 1 involved_in TAS
IMP
IEA 		(PMID:3472205)
(PMID:15632377) 		PINC
UniProt
InterPro		 PMID:3472205 PMID:15632377 GO_REF:0000002 NCBI chr 3:139,517,438...139,539,742
Ensembl chr 3:139,517,434...139,539,829 		JBrowse link
G RBP2 retinol binding protein 2 involved_in TAS (PMID:2992469) PINC PMID:2992469 NCBI chr 3:139,452,884...139,476,516
Ensembl chr 3:139,452,884...139,480,747 		JBrowse link
G RLBP1 retinaldehyde binding protein 1 involved_in TAS (PMID:9326942) PINC PMID:9326942 NCBI chr15:89,209,869...89,221,579
Ensembl chr15:89,209,869...89,221,614 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in TAS (PMID:9326941) PINC PMID:9326941 NCBI chr 1:68,428,822...68,449,954
Ensembl chr 1:68,428,822...68,451,103 		JBrowse link
vitamin B6 metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in IEA UniProt GO_REF:0000117 NCBI chr21:43,737,000...43,738,097
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PDXK pyridoxal kinase involved_in IEA UniProt GO_REF:0000117 NCBI chr21:43,719,129...43,762,299
Ensembl chr21:43,719,094...43,762,307 		JBrowse link
G PLPBP pyridoxal phosphate binding protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:37,762,546...37,779,768
Ensembl chr 8:37,762,595...37,779,768 		JBrowse link
vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr12:57,762,334...57,767,078
Ensembl chr12:57,762,334...57,768,986 		JBrowse link
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr11:14,877,440...14,892,443
Ensembl chr11:14,877,440...14,892,231 		JBrowse link
vitamin D catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 involved_in NAS
IBA
IDA
IEA 		(PMID:16720713)
(PMID:16617161), (PMID:24893882), (PMID:29461981), (PMID:8506296), (PMID:8679605) 		BHF-UCL
GO_Central
UniProt
Ensembl		 PMID:8506296 PMID:8679605 PMID:16617161 PMID:16720713 PMID:24893882 More... GO_REF:0000033 GO_REF:0000107 NCBI chr20:54,143,538...54,173,986
Ensembl chr20:54,153,446...54,173,986 		JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:57,762,334...57,767,078
Ensembl chr12:57,762,334...57,768,986 		JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IDA (PMID:29461981) UniProt PMID:29461981 NCBI chr 7:99,756,967...99,784,184
Ensembl chr 7:99,756,960...99,784,248 		JBrowse link
G FGF23 fibroblast growth factor 23 involved_in IDA (PMID:15040831) UniProt PMID:15040831 NCBI chr12:4,368,227...4,379,712
Ensembl chr12:4,368,227...4,379,712 		JBrowse link
vitamin D metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP11A1 cytochrome P450 family 11 subfamily A member 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr15:74,337,762...74,367,646
Ensembl chr15:74,337,759...74,367,646 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IDA (PMID:15546903) BHF-UCL PMID:15546903 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536 		JBrowse link
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 involved_in
acts_upstream_of_or_within 		ISO
IEA
TAS 		RGD
UniProt
Ensembl
Reactome		 PMID:1991512 GO_REF:0000107 GO_REF:0000117 RGD:1298844 Reactome:R-HSA-196791 NCBI chr20:54,143,538...54,173,986
Ensembl chr20:54,153,446...54,173,986 		JBrowse link
G CYP27A1 cytochrome P450 family 27 subfamily A member 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 2:218,782,147...218,815,293
Ensembl chr 2:218,781,749...218,815,293 		JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in ISO
IDA
IEA
TAS 		(PMID:9415400) RGD
BHF-UCL
UniProt
Reactome		 PMID:9371776 PMID:9415400 GO_REF:0000117 RGD:69372 Reactome:R-HSA-196791 NCBI chr12:57,762,334...57,767,078
Ensembl chr12:57,762,334...57,768,986 		JBrowse link
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 involved_in
acts_upstream_of_or_within 		TAS
IBA
IEA 		Reactome
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 Reactome:R-HSA-196791 NCBI chr11:14,877,440...14,892,443
Ensembl chr11:14,877,440...14,892,231 		JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IDA (PMID:15546903) BHF-UCL PMID:15546903 NCBI chr 7:99,756,967...99,784,184
Ensembl chr 7:99,756,960...99,784,248 		JBrowse link
G FGF23 fibroblast growth factor 23 involved_in ISO
IEA 		RGD
Ensembl		 PMID:15531762 GO_REF:0000107 RGD:1598934 NCBI chr12:4,368,227...4,379,712
Ensembl chr12:4,368,227...4,379,712 		JBrowse link
G GC GC vitamin D binding protein involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:71,741,693...71,805,520
Ensembl chr 4:71,741,696...71,804,041 		JBrowse link
G LGMN legumain involved_in TAS Reactome Reactome:R-HSA-196791 NCBI chr14:92,703,809...92,748,627
Ensembl chr14:92,703,807...92,748,679 		JBrowse link
G LRP2 LDL receptor related protein 2 involved_in
acts_upstream_of_or_within 		TAS
IEA 		Reactome
UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 Reactome:R-HSA-196791 NCBI chr 2:169,127,109...169,362,534
Ensembl chr 2:169,127,109...169,362,534 		JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 involved_in TAS Reactome Reactome:R-HSA-196791 NCBI chr19:4,007,736...4,039,386
Ensembl chr19:4,007,736...4,039,386 		JBrowse link
vitamin D3 metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:28798354) MGI PMID:28798354 NCBI chr 6:131,808,020...131,895,155
Ensembl chr 6:131,808,016...131,895,155 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:38,411,143...38,468,635
Ensembl chr 8:38,400,215...38,468,834 		JBrowse link
G FGFR4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO (PMID:24259513) MGI PMID:24259513 NCBI chr 5:177,086,915...177,098,144
Ensembl chr 5:177,086,905...177,098,144 		JBrowse link
G UGT1A3 UDP glucuronosyltransferase family 1 member A3 involved_in IDA (PMID:23756265) UniProt PMID:23756265 NCBI chr 2:233,729,042...233,773,300
Ensembl chr 2:233,729,042...233,773,300 		JBrowse link
G UGT1A4 UDP glucuronosyltransferase family 1 member A4 involved_in IDA (PMID:18177842), (PMID:24641623) UniProt PMID:18177842 PMID:24641623 NCBI chr 2:233,718,736...233,773,300
Ensembl chr 2:233,718,736...233,773,300 		JBrowse link
vitamin E biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLTP phospholipid transfer protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:45,898,620...45,912,155
Ensembl chr20:45,898,621...45,912,155 		JBrowse link
vitamin E metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 ISO RGD PMID:16520233 RGD:401900296 NCBI chr15:74,748,845...74,756,607
Ensembl chr15:74,748,845...74,756,607 		JBrowse link
G CYP4F12 cytochrome P450 family 4 subfamily F member 12 involved_in ISS UniProt GO_REF:0000024 NCBI chr19:15,673,087...15,697,174
Ensembl chr19:15,673,018...15,697,174 		JBrowse link
G CYP4F2 cytochrome P450 family 4 subfamily F member 2 involved_in IDA (PMID:20861217) UniProt PMID:20861217 NCBI chr19:15,878,023...15,898,074
Ensembl chr19:15,878,023...15,898,077 		JBrowse link
G NPC1L1 NPC1 like intracellular cholesterol transporter 1 involved_in IDA (PMID:28315682) UniProt PMID:28315682 NCBI chr 7:44,512,535...44,541,330
Ensembl chr 7:44,512,535...44,541,330 		JBrowse link
G NQO1 NAD(P)H quinone dehydrogenase 1 involved_in IDA (PMID:9271353) UniProt PMID:9271353 NCBI chr16:69,709,401...69,726,560
Ensembl chr16:69,706,996...69,726,668 		JBrowse link
G TTPA alpha tocopherol transfer protein involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:63,058,409...63,086,053
Ensembl chr 8:63,048,553...63,086,053 		JBrowse link
vitamin K biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBIAD1 UbiA prenyltransferase domain containing 1 involved_in IMP
IDA
IBA 		(PMID:23169578)
(PMID:20953171) 		UniProt
GO_Central		 PMID:20953171 PMID:23169578 GO_REF:0000033 NCBI chr 1:11,273,198...11,299,574
Ensembl chr 1:11,273,198...11,296,049 		JBrowse link
vitamin K catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP4F11 cytochrome P450 family 4 subfamily F member 11 involved_in IDA (PMID:24138531) UniProt PMID:24138531 NCBI chr19:15,912,377...15,934,867
Ensembl chr19:15,912,367...15,934,867 		JBrowse link
G CYP4F2 cytochrome P450 family 4 subfamily F member 2 involved_in IDA (PMID:19297519), (PMID:24138531) UniProt PMID:19297519 PMID:24138531 NCBI chr19:15,878,023...15,898,074
Ensembl chr19:15,878,023...15,898,077 		JBrowse link
vitamin K metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135050.2 novel protein, VKORC1 and PRSS53 readthrough involved_in IEA InterPro GO_REF:0000002 Ensembl chr16:31,083,439...31,094,956 JBrowse link
G AIFM2 AIF family member 2 involved_in
acts_upstream_of_or_within 		IDA (PMID:35922516)
(PMID:17073445), (PMID:33154105) 		UniProt PMID:17073445 PMID:33154105 PMID:35922516 NCBI chr10:70,112,271...70,132,825
Ensembl chr10:70,098,223...70,132,934 		JBrowse link
G CBR1 carbonyl reductase 1 involved_in IDA (PMID:18449627) UniProt PMID:18449627 NCBI chr21:36,070,024...36,073,164
Ensembl chr21:36,069,941...36,073,166 		JBrowse link
G GGCX gamma-glutamyl carboxylase involved_in
acts_upstream_of_or_within 		IDA
IEA
IBA 		(PMID:17073445)
(PMID:33154105) 		UniProt
Ensembl
GO_Central		 PMID:17073445 PMID:33154105 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:85,544,720...85,561,493
Ensembl chr 2:85,544,720...85,561,532 		JBrowse link
G NQO1 NAD(P)H quinone dehydrogenase 1 involved_in IDA
IEA 		(PMID:8999809) UniProt
Ensembl		 PMID:8999809 GO_REF:0000107 GO_REF:0000117 NCBI chr16:69,709,401...69,726,560
Ensembl chr16:69,706,996...69,726,668 		JBrowse link
G UBIAD1 UbiA prenyltransferase domain containing 1 involved_in TAS
IEA 		Reactome
UniProt		 GO_REF:0000117 Reactome:R-HSA-6806664 NCBI chr 1:11,273,198...11,299,574
Ensembl chr 1:11,273,198...11,296,049 		JBrowse link
G VKORC1 vitamin K epoxide reductase complex subunit 1 involved_in
acts_upstream_of_or_within 		IEA
IDA
IBA 		(PMID:17073445)
(PMID:16270630), (PMID:33154105) 		InterPro
UniProt
Ensembl
GO_Central		 PMID:16270630 PMID:17073445 PMID:33154105 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr16:31,090,854...31,094,797
Ensembl chr16:31,090,842...31,095,980 		JBrowse link
G VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 involved_in IEA
IBA
TAS
IDA 		(PMID:21367861) Ensembl
GO_Central
Reactome
UniProt
InterPro		 PMID:21367861 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 Reactome:R-HSA-6806664 NCBI chr 7:65,865,772...65,959,558
Ensembl chr 7:65,873,074...65,959,563 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 27245
    cellular process 19776
      metabolic process 13546
        small molecule metabolic process 2010
          vitamin metabolic process 143
            fat-soluble vitamin metabolic process + 59
            negative regulation of vitamin metabolic process + 6
            positive regulation of vitamin metabolic process + 5
            regulation of vitamin metabolic process + 14
            vitamin biosynthetic process + 29
            vitamin catabolic process + 23
            water-soluble vitamin metabolic process + 79
paths to the root