Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:one-carbon metabolic process
go back to main search page
Accession:GO:0006730 term browser browse the term
Definition:The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
Synonyms:exact_synonym: one carbon metabolism;   one-carbon transfer metabolic process;   one-carbon transfer metabolism
 alt_id: GO:0019753;   GO:0019754
 xref: UM-BBD_pathwayID:C1cyc

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
one-carbon metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnmt glycine N-methyltransferase acts_upstream_of_or_within ISO (PMID:17937387) MGI PMID:17937387 NCBI chrNW_004955437:8,944,288...8,946,642
Ensembl chrNW_004955437:8,944,047...8,946,642 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:25633902) RGD
BHF-UCL		 PMID:14597174 PMID:25633902 RGD:1302361 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773 		JBrowse link
G Sfxn1 sideroflexin 1 acts_upstream_of ISO (PMID:30442778) UniProt PMID:30442778 NCBI chrNW_004955408:28,054,211...28,105,294
Ensembl chrNW_004955408:28,054,211...28,106,175 		JBrowse link
G Sfxn3 sideroflexin 3 acts_upstream_of ISO (PMID:30442778) UniProt PMID:30442778 NCBI chrNW_004955485:9,157,657...9,165,243
Ensembl chrNW_004955485:9,157,657...9,165,243 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO (PMID:11516159), (PMID:29180469), (PMID:29364879), (PMID:29452640)
(PMID:33015733)		 UniProt PMID:11516159 PMID:29180469 PMID:29364879 PMID:29452640 PMID:33015733 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691 		JBrowse link
tetrahydrofolate interconversion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase involved_in ISO (PMID:360074) MGI PMID:360074 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO RGD PMID:6163778 RGD:7245485 NCBI chrNW_004955425:22,045,977...22,103,381
Ensembl chrNW_004955425:22,045,993...22,102,852 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5503248|PMID:23704330)
(PMID:10828945), (PMID:1881876)		 BHF-UCL PMID:1881876 PMID:10828945 PMID:23704330 MGI:5503248 NCBI chrNW_004955466:5,422,141...5,485,773
Ensembl chrNW_004955466:5,420,702...5,485,773 		JBrowse link
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like involved_in ISO PMID:24733394 RGD
UniProt		 PMID:21163947 PMID:24733394 RGD:150521648 RGD:7244288 NCBI chrNW_004955474:450,676...558,659
Ensembl chrNW_004955474:450,680...558,716 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in ISO (PMID:10551815)
(PMID:12673793), (PMID:29891918)
(PMID:12673793), (PMID:25736335)		 BHF-UCL
UniProt		 PMID:10551815 PMID:12673793 PMID:25736335 PMID:29891918 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240 		JBrowse link
G Mthfs methenyltetrahydrofolate synthetase involved_in ISO (PMID:12764149) BHF-UCL PMID:12764149 NCBI chrNW_004955533:720,255...756,893
Ensembl chrNW_004955533:720,353...756,893 		JBrowse link
G Sardh sarcosine dehydrogenase ISO RGD PMID:6163778 RGD:7245485 NCBI chrNW_004955513:2,933,918...2,975,645
Ensembl chrNW_004955513:2,933,918...2,976,931 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:24698160)
(PMID:19513116)		 BHF-UCL
MGI		 PMID:19513116 PMID:24698160 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO (PMID:19513116) MGI PMID:19513116 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691 		JBrowse link
G Tyms thymidylate synthetase involved_in ISO (PMID:15093541)
(PMID:22057276)		 BHF-UCL
MGI		 PMID:15093541 PMID:22057276 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12321
    metabolic process 7441
      cellular metabolic process 6650
        one-carbon metabolic process 13
          serine-isocitrate lyase pathway 0
          tetrahydrofolate interconversion 10
paths to the root