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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid metabolic process
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Accession:GO:0006721 term browser browse the term
Definition:The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups.
Synonyms:exact_synonym: terpenoid metabolism


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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11876656) Ensembl
MGI		 PMID:11876656 GO_REF:0000107 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11876656) Ensembl
MGI		 PMID:11876656 GO_REF:0000107 NCBI chr 1:29,060,682...29,083,815
Ensembl chr 1:29,060,701...29,083,143 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr 7:58,802,887...58,809,155
Ensembl chr 7:58,802,887...58,809,775 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481 		JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
beta-carotene metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25701869) Ensembl
MGI		 PMID:25701869 GO_REF:0000107 NCBI chr 6:7,008,330...7,054,089
Ensembl chr 6:7,012,332...7,055,305 		JBrowse link
carotenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPOX protoporphyrinogen oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:89,277,984...89,288,946
Ensembl chr 4:89,284,500...89,288,902 		JBrowse link
carotenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:39,864,136...39,916,491
Ensembl chr 9:39,872,645...39,917,263 		JBrowse link
diterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRH corticotropin releasing hormone ISO forskolin RGD PMID:21664419 RGD:5490546 NCBI chr 4:68,481,696...68,486,122
Ensembl chr 4:68,484,053...68,486,121 		JBrowse link
G EGFR epidermal growth factor receptor ISO taxanes RGD PMID:21448670 RGD:5131453 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,475,589 		JBrowse link
G HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 ISO forskolin RGD PMID:1312436 RGD:4889580 NCBI chr 4:101,565,229...101,574,110 JBrowse link
G PGR progesterone receptor ISO forskolin, phorbol 12-myristate 13-acetate RGD PMID:8344215 RGD:1601291 NCBI chr 9:32,035,684...32,129,776
Ensembl chr 9:32,035,684...32,129,221 		JBrowse link
G SLC12A1 solute carrier family 12 member 1 ISO forskolin RGD PMID:19592485 RGD:7242914 NCBI chr 1:123,481,892...123,571,655
Ensembl chr 1:123,481,369...123,571,630 		JBrowse link
G SRD5A1 steroid 5 alpha-reductase 1 ISO forskolin RGD PMID:14997014 RGD:4891943 NCBI chr16:75,309,830...75,335,438
Ensembl chr16:75,310,211...75,335,391 		JBrowse link
G STAR steroidogenic acute regulatory protein ISO forskolin RGD PMID:11064152 RGD:4145763 NCBI chr15:48,377,597...48,385,398
Ensembl chr15:48,377,521...48,385,462 		JBrowse link
farnesol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C1 aldo-keto reductase family 1, member C1 involved_in ISO (PMID:21187079) UniProt PMID:21187079 NCBI chr10:65,580,297...65,594,998
Ensembl chr10:65,576,464...65,678,248 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDPS farnesyl diphosphate synthase involved_in ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter		 PMID:8188698 GO_REF:0000033 GO_REF:0000118 RGD:2316305 NCBI chr 4:94,500,140...94,514,820
Ensembl chr 4:94,500,141...94,518,408 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA
IBA		 InterPro
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr16:27,936,225...27,957,261
Ensembl chr16:27,936,218...27,957,193 		JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA
IBA		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:101,420,941...101,440,302
Ensembl chr 4:101,420,872...101,438,126 		JBrowse link
G LOC110260333 hydroxymethylglutaryl-CoA synthase, mitochondrial-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:101,385,486...101,404,273
Ensembl chr 4:101,385,512...101,443,405 		JBrowse link
farnesyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:217,304,115...217,305,017 JBrowse link
farnesyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDFT1 farnesyl-diphosphate farnesyltransferase 1 involved_in ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:16440058 GO_REF:0000033 GO_REF:0000118 RGD:1626611 NCBI chr14:14,976,259...15,010,701
Ensembl chr14:14,967,074...15,016,227 		JBrowse link
geranyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:217,304,115...217,305,017 JBrowse link
geranylgeranyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:217,304,115...217,305,017 JBrowse link
monoterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:58,779,529...58,786,155
Ensembl chr 7:58,779,475...58,786,100 		JBrowse link
G CYP2C49 cytochrome P450 2C49 involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082 NCBI chr14:106,571,803...106,612,082
Ensembl chr14:106,285,173...106,612,455 		JBrowse link
G CYP2D6 cytochrome P450 family 2 subfamily D member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:6,539,021...6,543,643
Ensembl chr 5:6,538,907...6,543,642 		JBrowse link
G CYP2E1 cytochrome P450 family 2 subfamily E member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:141,690,737...141,703,078
Ensembl chr14:141,690,426...141,736,817 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C1 aldo-keto reductase family 1, member C1 involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr10:65,580,297...65,594,998
Ensembl chr10:65,576,464...65,678,248 		JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:38,884,311...39,032,944
Ensembl chr 2:38,884,362...39,032,996 		JBrowse link
pentacyclic triterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HTRA2 HtrA serine peptidase 2 ISO asiatic acid RGD PMID:22296759 RGD:5688365 NCBI chr 3:68,516,666...68,520,025
Ensembl chr 3:68,516,500...68,519,886 		JBrowse link
phytol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH3A2 aldehyde dehydrogenase 3 family member A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:59,936,838...59,953,677
Ensembl chr12:59,936,848...59,954,358 		JBrowse link
G PECR peroxisomal trans-2-enoyl-CoA reductase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:118,296,359...118,335,886
Ensembl chr15:118,295,119...118,335,835 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100512656 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434 		JBrowse link
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439 		JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGAT1 diacylglycerol O-acyltransferase 1 ISO RGD PMID:18000880 RGD:10400849 NCBI chr 4:452,890...463,665
Ensembl chr 4:452,662...466,684 		JBrowse link
G ISX intestine specific homeobox acts_upstream_of_or_within ISO (PMID:18093975) MGI PMID:18093975
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:123,202,720...123,333,044
Ensembl chr 4:123,202,753...123,331,144 		JBrowse link
G AKR1C1 aldo-keto reductase family 1, member C1 involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr10:65,580,297...65,594,998
Ensembl chr10:65,576,464...65,678,248 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12610736) Ensembl
MGI		 PMID:12610736 GO_REF:0000107 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:29,060,682...29,083,815
Ensembl chr 1:29,060,701...29,083,143 		JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:25701869) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:25701869 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:7,008,330...7,054,089
Ensembl chr 6:7,012,332...7,055,305 		JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25701869) Ensembl
MGI
TreeGrafter		 PMID:25701869 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:39,864,136...39,916,491
Ensembl chr 9:39,872,645...39,917,263 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,205,683 		JBrowse link
G DHRS4 dehydrogenase/reductase (SDR family) member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:12680773) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:12680773 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:75,242,121...75,255,594
Ensembl chr 7:75,242,124...75,255,598 		JBrowse link
G DHRSX dehydrogenase/reductase X-linked involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  Y:5,248,447...5,374,873 JBrowse link
G LOC100517560 cytochrome P450 27C1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr15:25,244,585...25,259,545 JBrowse link
G LOC102159510 dehydrogenase/reductase SDR family member on chromosome X involved_in IEA TreeGrafter GO_REF:0000118
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (PMID:11562477) MGI PMID:11562477 NCBI chr14:105,037,360...105,044,552
Ensembl chr14:105,037,464...105,044,765 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439 		JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12807874) MGI
Ensembl		 PMID:12807874 GO_REF:0000107 NCBI chr 7:91,415,041...91,452,530
Ensembl chr 7:91,415,042...91,452,405 		JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:59,274,383...59,293,139
Ensembl chr 6:59,274,387...59,292,765 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:21785167 GO_REF:0000118 RGD:6893661 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467 		JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:75,586,346...75,598,985
Ensembl chr 4:75,586,525...75,598,989 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11013254), (PMID:11044606), (PMID:16241904) RGD
MGI
Ensembl		 PMID:11013254 PMID:11044606 PMID:15950969 PMID:16241904 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481 		JBrowse link
G RBP1 retinol binding protein 1 involved_in ISO
IEA		 RGD
InterPro		 PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17473173) Ensembl
MGI		 PMID:17473173 GO_REF:0000107 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,095 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:21138835 GO_REF:0000107 RGD:6771354 NCBI chr 3:70,573,551...70,593,416
Ensembl chr 3:70,572,197...70,593,408 		JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:104,550,901...104,558,977
Ensembl chr14:104,551,134...104,559,978 		JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:641,997...649,313
Ensembl chr 3:642,471...648,909 		JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:121,089,355...121,105,010
Ensembl chr 8:121,020,910...121,108,190 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:10191271)
(PMID:16207763)
(PMID:12808103), (PMID:12851412)		 MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14623241)
(PMID:8797830)
(PMID:16368932)		 RGD
MGI
Ensembl		 PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 GO_REF:0000107 RGD:1576367 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17207476)
(PMID:16207763)		 Ensembl
MGI		 PMID:16207763 PMID:17207476 GO_REF:0000107 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,511 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:29,060,682...29,083,815
Ensembl chr 1:29,060,701...29,083,143 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9826179) Ensembl
MGI		 PMID:9826179 GO_REF:0000107 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155 		JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15531370) Ensembl
MGI		 PMID:15531370 GO_REF:0000107 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,095 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:70,573,551...70,593,416
Ensembl chr 3:70,572,197...70,593,408 		JBrowse link
G CYP2C42 cytochrome P450 C42 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr14:106,666,445...106,701,809
Ensembl chr14:106,666,419...106,713,121 		JBrowse link
G CYP2S1 cytochrome P450 family 2 subfamily S member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:49,221,361...49,235,335
Ensembl chr 6:49,221,763...49,235,330 		JBrowse link
G CYP3A22 cytochrome P450 family 3 subfamily A member 22 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 3:6,617,256...6,665,179
Ensembl chr 3:6,615,343...6,822,817 		JBrowse link
G CYP3A29 cytochrome P450 family 3 subfamily A member 29 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 3:6,738,502...6,778,121
Ensembl chr 3:6,738,486...6,778,944 		JBrowse link
G LOC100512656 retinol dehydrogenase 16 ISO RGD PMID:7499345 RGD:1299624 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434 		JBrowse link
G LOC100512795 alcohol dehydrogenase class 4 mu/sigma chain involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:15193143)
(PMID:10358022), (PMID:12851412)
(PMID:10358022), (PMID:10402668)		 Ensembl
MGI
TreeGrafter
GO_Central		 PMID:10358022 PMID:10402668 PMID:12851412 PMID:15193143 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:121,020,683...121,041,735
Ensembl chr 8:121,020,969...121,041,506 		JBrowse link
G LOC100517560 cytochrome P450 27C1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr15:25,244,585...25,259,545 JBrowse link
G LOC110262184 alcohol dehydrogenase 1-like involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:121,133,130...121,148,456 JBrowse link
G RBP1 retinol binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15193143) Ensembl
MGI		 PMID:15193143 GO_REF:0000107 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458 		JBrowse link
G SCPEP1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chr12:33,265,509...33,296,805
Ensembl chr12:33,265,562...33,298,142 		JBrowse link
retinoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:121,089,355...121,105,010
Ensembl chr 8:121,020,910...121,108,190 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:121,225,485...121,259,262
NCBI chr  X:98,582,002...98,583,002
Ensembl chr 8:121,225,656...121,261,746 		JBrowse link
G ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within ISO (PMID:12027900) MGI PMID:12027900 NCBI chr 8:121,266,794...121,282,313
Ensembl chr 8:121,266,764...121,282,310 		JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr18:14,593,516...14,752,316
Ensembl chr18:14,684,036...14,752,310 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 involved_in ISO PMID:7832787 UniProt PMID:7832787 RGD:11558002 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:7,008,330...7,054,089
Ensembl chr 6:7,012,332...7,055,305 		JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:24005908) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:24005908 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:72,556,234...72,599,233
Ensembl chr 6:72,556,236...72,598,815 		JBrowse link
G DHRS4 dehydrogenase/reductase (SDR family) member 4 involved_in IDA (PMID:12604222) UniProt PMID:12604222 NCBI chr 7:75,242,121...75,255,594
Ensembl chr 7:75,242,124...75,255,598 		JBrowse link
G LIPA lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27354281) Ensembl
MGI		 PMID:27354281 GO_REF:0000107 NCBI chr14:101,131,372...101,254,739
Ensembl chr14:101,126,257...101,193,614 		JBrowse link
G LOC100512795 alcohol dehydrogenase class 4 mu/sigma chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12027900) Ensembl
MGI		 PMID:12027900 GO_REF:0000107 NCBI chr 8:121,020,683...121,041,735
Ensembl chr 8:121,020,969...121,041,506 		JBrowse link
G LOC110261221 cytochrome P450 2J2-like ISO RGD PMID:9606960 RGD:1625388 NCBI chr 6:152,321,816...152,358,179
Ensembl chr 6:152,321,848...152,648,979 		JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:55,903,693...55,906,976
Ensembl chr18:55,903,699...55,906,945 		JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,415,041...91,452,530
Ensembl chr 7:91,415,042...91,452,405 		JBrowse link
G RDH5 retinol dehydrogenase 5 involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:21,166,869...21,170,913
Ensembl chr 5:21,166,510...21,170,897 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467 		JBrowse link
retinol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:121,089,355...121,105,010
Ensembl chr 8:121,020,910...121,108,190 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:121,225,485...121,259,262
NCBI chr  X:98,582,002...98,583,002
Ensembl chr 8:121,225,656...121,261,746 		JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in IEA GOC GO_REF:0000108 NCBI chr18:14,593,516...14,752,316
Ensembl chr18:14,684,036...14,752,310 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:12851412) MGI PMID:12851412 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,299...226,217,308 		JBrowse link
G AWAT2 acyl-CoA wax alcohol acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:56,101,635...56,108,243
Ensembl chr  X:56,104,509...56,114,744 		JBrowse link
G CEL carboxyl ester lipase involved_in IEA GOC GO_REF:0000108 NCBI chr 1:272,763,203...272,770,259
Ensembl chr 1:272,763,003...272,770,255 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr 7:58,802,887...58,809,155
Ensembl chr 7:58,802,887...58,809,775 		JBrowse link
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr 7:58,779,529...58,786,155
Ensembl chr 7:58,779,475...58,786,100 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,205,683 		JBrowse link
G CYP2D6 cytochrome P450 family 2 subfamily D member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:6,539,021...6,543,643
Ensembl chr 5:6,538,907...6,543,642 		JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 4:452,890...463,665
Ensembl chr 4:452,662...466,684 		JBrowse link
G DGAT2 diacylglycerol O-acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:10,032,163...10,066,082
Ensembl chr 9:10,032,128...10,068,437 		JBrowse link
G DHRS4 dehydrogenase/reductase (SDR family) member 4 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:75,242,121...75,255,594
Ensembl chr 7:75,242,124...75,255,598 		JBrowse link
G DHRS7 dehydrogenase/reductase 7 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:189,153,579...189,170,745
Ensembl chr 1:189,151,131...189,170,534 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:75,507,538...75,533,942
Ensembl chr15:75,507,588...75,534,481 		JBrowse link
G HSD17B6 hydroxysteroid 17-beta dehydrogenase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:22,089,496...22,114,319
Ensembl chr 5:22,092,578...22,273,382 		JBrowse link
G LIPE lipase E, hormone sensitive type involved_in IEA GOC GO_REF:0000108 NCBI chr 6:49,543,671...49,560,126
Ensembl chr 6:49,540,708...49,560,125 		JBrowse link
G LOC100512656 retinol dehydrogenase 16 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:7499345 GO_REF:0000118 RGD:1299624 NCBI chr 5:22,277,006...22,285,534
Ensembl chr 5:22,228,057...22,292,434 		JBrowse link
G LOC100512795 alcohol dehydrogenase class 4 mu/sigma chain involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:15193143)
(PMID:10358022), (PMID:10402668)
(PMID:10358022), (PMID:12851412)		 Ensembl
MGI
GO_Central
TreeGrafter
RGD		 PMID:10358022 PMID:10402668 PMID:10829036 PMID:12851412 PMID:15193143 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:631904 NCBI chr 8:121,020,683...121,041,735
Ensembl chr 8:121,020,969...121,041,506 		JBrowse link
G LOC100517560 cytochrome P450 27C1 involved_in ISO (PMID:27059013), (PMID:28701464) UniProt PMID:27059013 PMID:28701464 NCBI chr15:25,244,585...25,259,545 JBrowse link
G LOC100626199 retinol dehydrogenase 16 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:22,285,211...22,293,945 JBrowse link
G LOC106510305 17-beta-hydroxysteroid dehydrogenase type 6-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:22,159,475...22,170,373 JBrowse link
G LOC110259135 diacylglycerol O-acyltransferase 2-like involved_in IEA GOC GO_REF:0000108
G LOC110262184 alcohol dehydrogenase 1-like involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:121,133,130...121,148,456 JBrowse link
G LRAT lecithin retinol acyltransferase acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:18093970) RGD
MGI
GO_Central
TreeGrafter
InterPro
Ensembl		 PMID:2253789 PMID:8460936 PMID:9244401 PMID:14642897 PMID:18093970 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:1599829 RGD:1599831 RGD:1599832 RGD:6484737 NCBI chr 8:74,412,226...74,428,713
Ensembl chr 8:74,409,461...74,419,681 		JBrowse link
G PLB1 phospholipase B1 involved_in ISO
IEA		 RGD
GOC		 PMID:8117729 GO_REF:0000108 RGD:6903951 NCBI chr 3:110,605,923...110,741,236
Ensembl chr 3:110,605,923...110,741,130 		JBrowse link
G PNLIP pancreatic lipase involved_in IEA GOC GO_REF:0000108 NCBI chr14:126,771,920...126,789,097
Ensembl chr14:126,772,911...126,790,001 		JBrowse link
G PNPLA4 patatin like phospholipase domain containing 4 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:4,540,846...4,623,831
NCBI chr  Y:3,287,635...3,369,286 		JBrowse link
G RBP1 retinol binding protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15193143)
(PMID:15193143), (PMID:15765518)		 RGD
MGI
Ensembl		 PMID:14642897 PMID:15193143 PMID:15765518 GO_REF:0000107 RGD:6484737 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458 		JBrowse link
G RBP4 retinol binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18093970) Ensembl
MGI		 PMID:18093970 GO_REF:0000107 NCBI chr14:105,037,360...105,044,552
Ensembl chr14:105,037,464...105,044,765 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 4:62,569,877...62,600,981
Ensembl chr 4:62,569,885...62,601,439 		JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,415,041...91,452,530
Ensembl chr 7:91,415,042...91,452,405 		JBrowse link
G RDH12 retinol dehydrogenase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,481,238...91,493,838
Ensembl chr 7:91,481,272...91,493,809 		JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:59,274,383...59,293,139
Ensembl chr 6:59,274,387...59,292,765 		JBrowse link
G RDH14 retinol dehydrogenase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25533474) Ensembl
MGI		 PMID:25533474 GO_REF:0000107 NCBI chr 3:119,453,986...119,458,787
Ensembl chr 3:119,453,995...119,458,778 		JBrowse link
G RDH16 retinol dehydrogenase 16 (all-trans) involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:22,251,751...22,266,801
Ensembl chr 5:22,251,746...22,257,945 		JBrowse link
G RDH8 retinol dehydrogenase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:15755727) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:15755727 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:68,871,707...68,878,222
Ensembl chr 2:68,871,707...68,877,675 		JBrowse link
G RETSAT retinol saturase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,401,161...59,416,829
Ensembl chr 3:59,399,688...59,416,685 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in ISO
IEA		 RGD
GOC		 PMID:3603006 GO_REF:0000108 RGD:9585656 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467 		JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:75,586,346...75,598,985
Ensembl chr 4:75,586,525...75,598,989 		JBrowse link
G SDR9C7 short chain dehydrogenase/reductase family 9C member 7 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:22,228,041...22,251,622
Ensembl chr 5:22,228,042...22,244,528 		JBrowse link
sesquiterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH3A2 aldehyde dehydrogenase 3 family member A2 involved_in ISO (PMID:18035827) UniProt PMID:18035827 NCBI chr12:59,936,838...59,953,677
Ensembl chr12:59,936,848...59,954,358 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LSS lanosterol synthase involved_in IEA InterPro GO_REF:0000002
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIPA lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27354281) Ensembl
MGI		 PMID:27354281 GO_REF:0000107 NCBI chr14:101,131,372...101,254,739
Ensembl chr14:101,126,257...101,193,614 		JBrowse link
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:11108736) Ensembl
MGI
TreeGrafter
GO_Central		 PMID:11108736 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:74,412,226...74,428,713
Ensembl chr 8:74,409,461...74,419,681 		JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458 		JBrowse link
xanthophyll biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COQ6 coenzyme Q6, monooxygenase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:97,258,617...97,270,927
Ensembl chr 7:97,258,653...97,271,093 		JBrowse link
xanthophyll catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:39,864,136...39,916,491
Ensembl chr 9:39,872,645...39,917,263 		JBrowse link
xanthophyll metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25701869) Ensembl
MGI		 PMID:25701869 GO_REF:0000107 NCBI chr 9:39,864,136...39,916,491
Ensembl chr 9:39,872,645...39,917,263 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:144,206,078...144,229,471
Ensembl chr 6:144,206,078...144,229,467 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17813
    metabolic process 10347
      cellular metabolic process 9044
        cellular lipid metabolic process 1019
          isoprenoid metabolic process 118
            terpenoid metabolic process 89
              4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate metabolic process + 0
              GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process + 0
              diterpenoid metabolic process + 77
              farnesyl diphosphate metabolic process + 6
              geranyl diphosphate metabolic process + 1
              geranylgeranyl diphosphate metabolic process + 1
              monoterpenoid metabolic process + 4
              phytyl diphosphate metabolic process + 0
              polyterpenoid metabolic process + 0
              sesquiterpenoid metabolic process + 2
              terpenoid biosynthetic process + 20
              terpenoid catabolic process + 7
              tetraterpenoid metabolic process + 5
              triterpenoid metabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 17813
    metabolic process 10347
      primary metabolic process 9000
        lipid metabolic process 1354
          cellular lipid metabolic process 1019
            isoprenoid metabolic process 118
              terpenoid metabolic process 89
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate metabolic process + 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process + 0
                diterpenoid metabolic process + 77
                farnesyl diphosphate metabolic process + 6
                geranyl diphosphate metabolic process + 1
                geranylgeranyl diphosphate metabolic process + 1
                monoterpenoid metabolic process + 4
                phytyl diphosphate metabolic process + 0
                polyterpenoid metabolic process + 0
                sesquiterpenoid metabolic process + 2
                terpenoid biosynthetic process + 20
                terpenoid catabolic process + 7
                tetraterpenoid metabolic process + 5
                triterpenoid metabolic process + 2
paths to the root