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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid metabolic process
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Accession:GO:0006721 term browser browse the term
Definition:The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups.
Synonyms:exact_synonym: terpenoid metabolism

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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chrNW_004624886:2,702,328...2,721,954
Ensembl chrNW_004624886:2,702,960...2,722,357 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624787:6,751,787...6,776,181
Ensembl chrNW_004624787:6,758,478...6,776,238 		JBrowse link
G LOC101707509 cytochrome P450 1A1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chrNW_004627988:7...1,323 JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
beta-carotene metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco1 beta-carotene oxygenase 1 acts_upstream_of_or_within ISO (PMID:25701869) MGI PMID:25701869 NCBI chrNW_004624746:6,146,338...6,181,020
Ensembl chrNW_004624746:6,143,892...6,180,408 		JBrowse link
carotenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in ISO (PMID:21106934) BHF-UCL PMID:21106934 NCBI chrNW_004624784:7,324,312...7,353,733
Ensembl chrNW_004624784:7,334,472...7,353,802 		JBrowse link
diterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crh corticotropin releasing hormone ISO forskolin RGD PMID:21664419 RGD:5490546 NCBI chrNW_004624744:25,194,458...25,196,658
Ensembl chrNW_004624744:25,194,495...25,196,488 		JBrowse link
G Egfr epidermal growth factor receptor ISO taxanes RGD PMID:21448670 RGD:5131453 NCBI chrNW_004624740:584,133...713,205
Ensembl chrNW_004624740:589,606...713,271 		JBrowse link
G Pgr progesterone receptor ISO forskolin, phorbol 12-myristate 13-acetate RGD PMID:8344215 RGD:1601291 NCBI chrNW_004624878:1,714,196...1,769,302
Ensembl chrNW_004624878:1,714,559...1,762,421 		JBrowse link
G Slc12a1 solute carrier family 12 member 1 ISO forskolin RGD PMID:19592485 RGD:7242914 NCBI chrNW_004624731:11,403,936...11,486,244
Ensembl chrNW_004624731:11,403,675...11,484,982 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO forskolin RGD PMID:14997014 RGD:4891943 NCBI chrNW_004624751:4,309,518...4,335,332
Ensembl chrNW_004624751:4,309,447...4,336,083 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdps farnesyl diphosphate synthase involved_in ISO
IEA 		RGD
TreeGrafter		 PMID:8188698 GO_REF:0000118 RGD:2316305 NCBI chrNW_004624885:942,998...949,529
Ensembl chrNW_004624885:943,571...949,528 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624759:11,826,793...11,847,111
Ensembl chrNW_004624759:11,826,876...11,847,111 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624772:15,432,612...15,464,343
Ensembl chrNW_004624772:15,432,198...15,467,797 		JBrowse link
farnesyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdft1 farnesyl-diphosphate farnesyltransferase 1 involved_in ISO
IEA 		RGD
InterPro
TreeGrafter		 PMID:16440058 GO_REF:0000002 GO_REF:0000118 RGD:1626611 NCBI chrNW_004624758:25,340,142...25,363,669
Ensembl chrNW_004624758:25,340,074...25,366,299 		JBrowse link
monoterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101722366 cytochrome P450 2E1 involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082 NCBI chrNW_004624737:12,335,733...12,345,278
Ensembl chrNW_004624737:12,335,681...12,345,514 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prmt3 protein arginine methyltransferase 3 involved_in ISO (PMID:33495566) UniProt PMID:33495566 NCBI chrNW_004624766:11,669,732...11,797,133
Ensembl chrNW_004624766:11,670,108...11,795,272 		JBrowse link
pentacyclic triterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 ISO asiatic acid RGD PMID:22296759 RGD:5688365 NCBI chrNW_004624749:28,980,375...28,983,719
Ensembl chrNW_004624749:28,980,362...28,983,869 		JBrowse link
phytol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh3a2 aldehyde dehydrogenase 3 family member A2 involved_in ISO (PMID:15110319) UniProt PMID:15110319 NCBI chrNW_004624849:5,911,711...5,941,706
Ensembl chrNW_004624849:5,912,273...5,938,007 		JBrowse link
G Pecr peroxisomal trans-2-enoyl-CoA reductase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:9,017,336...9,067,196
Ensembl chrNW_004624823:9,017,410...9,066,734 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgat1 diacylglycerol O-acyltransferase 1 ISO RGD PMID:18000880 RGD:10400849 NCBI chrNW_004624735:12,525,120...12,535,436
Ensembl chrNW_004624735:12,525,284...12,535,193 		JBrowse link
G Isx intestine specific homeobox acts_upstream_of_or_within ISO (PMID:18093975) MGI PMID:18093975 NCBI chrNW_004624750:460,058...483,303
Ensembl chrNW_004624750:468,316...482,716 		JBrowse link
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 involved_in ISO (PMID:29847635), (PMID:33375396) UniProt PMID:29847635 PMID:33375396 NCBI chrNW_004624742:3,536,591...3,661,706
Ensembl chrNW_004624742:3,536,591...3,661,468 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:12610736) MGI PMID:12610736 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 involved_in ISO (PMID:11007799) UniProt PMID:11007799 NCBI chrNW_004624886:2,702,328...2,721,954
Ensembl chrNW_004624886:2,702,960...2,722,357 		JBrowse link
G Bco1 beta-carotene oxygenase 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:25701869) MGI
TreeGrafter		 PMID:25701869 GO_REF:0000118 NCBI chrNW_004624746:6,146,338...6,181,020
Ensembl chrNW_004624746:6,143,892...6,180,408 		JBrowse link
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:25701869) MGI
TreeGrafter		 PMID:25701869 GO_REF:0000118 NCBI chrNW_004624784:7,324,312...7,353,733
Ensembl chrNW_004624784:7,334,472...7,353,802 		JBrowse link
G LOC101701066 cytochrome P450 1B1 involved_in ISO (PMID:15258110) UniProt PMID:15258110 NCBI chrNW_004624738:19,639,215...19,647,807
Ensembl chrNW_004624738:19,638,456...19,647,497 		JBrowse link
G LOC101708169 dehydrogenase/reductase SDR family member 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,478,036...8,490,227
Ensembl chrNW_004624820:8,477,878...8,490,533 		JBrowse link
G LOC101723971 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624886:3,746,074...3,762,257
Ensembl chrNW_004624886:3,746,379...3,766,774 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO (PMID:11562477) MGI PMID:11562477 NCBI chrNW_004624737:4,795,054...4,800,830
Ensembl chrNW_004624737:4,791,628...4,800,989 		JBrowse link
G Rdh10 retinol dehydrogenase 10 involved_in ISO (PMID:19458327) UniProt PMID:19458327 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:33,283,336...33,295,797
Ensembl chrNW_004624734:33,283,497...33,295,091 		JBrowse link
G Rdh13 retinol dehydrogenase 13 involved_in ISO (PMID:18039331) UniProt PMID:18039331 NCBI chrNW_004624832:2,141,906...2,159,009
Ensembl chrNW_004624832:2,141,902...2,159,009 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO
IEA 		RGD
TreeGrafter		 PMID:21785167 GO_REF:0000118 RGD:6893661 NCBI chrNW_004624742:27,302,222...27,319,549
Ensembl chrNW_004624742:27,302,453...27,319,203 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 involved_in ISO (PMID:29240402)
(PMID:33565183) 		UniProt
RGD		 PMID:15950969 PMID:21138835 PMID:29240402 PMID:33565183 RGD:6771322 RGD:6771354 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in 		ISO
IEA 		RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chrNW_004624885:1,862,911...1,867,656
Ensembl chrNW_004624885:1,862,822...1,867,726 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chrNW_004624787:6,751,787...6,776,181
Ensembl chrNW_004624787:6,758,478...6,776,238 		JBrowse link
G Rbp1 retinol binding protein 1 involved_in ISO
IEA 		RGD
InterPro		 PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chrNW_004624730:16,091,863...16,119,591
Ensembl chrNW_004624730:16,091,863...16,119,591 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) MGI PMID:17473173 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf9 KLF transcription factor 9 acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chrNW_004624736:2,653,336...2,682,677
Ensembl chrNW_004624736:2,654,220...2,682,673 		JBrowse link
G LOC101698313 cytochrome P450 2W1 involved_in ISO (PMID:26936974) UniProt PMID:26936974 NCBI chrNW_004624740:26,545,725...26,551,906
Ensembl chrNW_004624740:26,544,715...26,549,433 		JBrowse link
G LOC101699044 cytochrome P450 26A1 involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004624737:4,324,964...4,329,488
Ensembl chrNW_004624737:4,325,755...4,329,758 		JBrowse link
G LOC101708363 cytochrome P450 26C1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624737:4,312,711...4,323,833
Ensembl chrNW_004624737:4,312,772...4,320,978 		JBrowse link
G LOC101714280 cytochrome P450 26B1 involved_in ISO
IEA 		RGD
UniProt		 PMID:21138835 GO_REF:0000117 RGD:6771354 NCBI chrNW_004624762:1,455,828...1,474,201
Ensembl chrNW_004624762:1,456,440...1,472,381 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chrNW_004624904:1,475,664...1,507,588 JBrowse link
G Strap serine/threonine kinase receptor associated protein acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chrNW_004624752:22,143,774...22,170,164
Ensembl chrNW_004624752:22,143,774...22,170,182 		JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:12808103), (PMID:12851412)
(PMID:10191271)
(PMID:16207763) 		MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in 		ISO (PMID:14623241)
(PMID:8797830)
(PMID:16368932)
(PMID:33565183) 		RGD
MGI
UniProt		 PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 PMID:33565183 RGD:1576367 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in 		IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624886:2,702,328...2,721,954
Ensembl chrNW_004624886:2,702,960...2,722,357 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within ISO (PMID:9826179) MGI PMID:9826179 NCBI chrNW_004624885:1,862,911...1,867,656
Ensembl chrNW_004624885:1,862,822...1,867,726 		JBrowse link
G LOC101699044 cytochrome P450 26A1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15531370) MGI
Ensembl		 PMID:15531370 GO_REF:0000107 NCBI chrNW_004624737:4,324,964...4,329,488
Ensembl chrNW_004624737:4,325,755...4,329,758 		JBrowse link
G LOC101700677 cytochrome P450 2S1 involved_in ISO (PMID:12711469) UniProt PMID:12711469 NCBI chrNW_004624907:57,749...67,274
Ensembl chrNW_004624907:57,276...67,275 		JBrowse link
G LOC101700953 alcohol dehydrogenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004625009:103,092...118,888 JBrowse link
G LOC101708592 cytochrome P450 2C55 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624737:6,040,817...6,100,509
Ensembl chrNW_004624737:6,040,202...6,102,086 		JBrowse link
G LOC101714280 cytochrome P450 26B1 involved_in ISO (PMID:22020119) UniProt PMID:22020119 NCBI chrNW_004624762:1,455,828...1,474,201
Ensembl chrNW_004624762:1,456,440...1,472,381 		JBrowse link
G Rbp1 retinol binding protein 1 acts_upstream_of_or_within ISO (PMID:15193143) MGI PMID:15193143 NCBI chrNW_004624730:16,091,863...16,119,591
Ensembl chrNW_004624730:16,091,863...16,119,591 		JBrowse link
G Scpep1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chrNW_004624795:12,016,363...12,041,615
Ensembl chrNW_004624795:12,016,302...12,042,353 		JBrowse link
retinoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004625024:32,237...60,983
Ensembl chrNW_004625024:32,348...63,242 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 involved_in ISO PMID:7832787 UniProt PMID:7832787 RGD:11558002 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
G Bco1 beta-carotene oxygenase 1 involved_in ISO (PMID:11401432)
(PMID:11092891), (PMID:11418584)
PMID:12468597 		UniProt
MGI		 PMID:11092891 PMID:11401432 PMID:11418584 PMID:12468597 RGD:634627 NCBI chrNW_004624746:6,146,338...6,181,020
Ensembl chrNW_004624746:6,143,892...6,180,408 		JBrowse link
G Clps colipase involved_in ISO (PMID:11751900) MGI PMID:11751900 NCBI chrNW_004624754:21,762,628...21,770,711
Ensembl chrNW_004624754:21,768,316...21,770,706 		JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 involved_in ISO (PMID:18348983) MGI PMID:18348983 NCBI chrNW_004624735:12,525,120...12,535,436
Ensembl chrNW_004624735:12,525,284...12,535,193 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:24005908) MGI
TreeGrafter		 PMID:24005908 GO_REF:0000118 NCBI chrNW_004624818:557,399...590,872
Ensembl chrNW_004624818:557,409...590,872 		JBrowse link
G Ldlr low density lipoprotein receptor involved_in ISO (PMID:8798405) MGI PMID:8798405 NCBI chrNW_004624828:2,999,122...3,021,893
Ensembl chrNW_004624828:2,999,169...3,021,987 		JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within ISO (PMID:27354281) MGI PMID:27354281 NCBI chrNW_004624737:49,471...82,981
Ensembl chrNW_004624737:49,371...83,514 		JBrowse link
G Lpl lipoprotein lipase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:15,652,553...15,680,107
Ensembl chrNW_004624758:15,651,992...15,680,762 		JBrowse link
G Lrat lecithin retinol acyltransferase involved_in ISO (PMID:16115871)
(PMID:10487743) 		MGI PMID:10487743 PMID:16115871 NCBI chrNW_004624853:2,936,426...2,941,993
Ensembl chrNW_004624853:2,936,109...2,945,101 		JBrowse link
G Pnpla2 patatin like domain 2, triacylglycerol lipase involved_in ISO (PMID:25732851) MGI PMID:25732851 NCBI chrNW_004624766:21,692,023...21,697,018
Ensembl chrNW_004624766:21,690,873...21,697,009 		JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in ISO (PMID:9204961) UniProt PMID:9204961 NCBI chrNW_004624800:6,138,236...6,140,922
Ensembl chrNW_004624800:6,139,006...6,140,679 		JBrowse link
G Rbp1 retinol binding protein 1 involved_in ISO (PMID:10487743) MGI PMID:10487743 NCBI chrNW_004624730:16,091,863...16,119,591
Ensembl chrNW_004624730:16,091,863...16,119,591 		JBrowse link
G Rbp2 retinol binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:16,018,142...16,060,179
Ensembl chrNW_004624730:16,016,524...16,060,141 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:25732851) MGI PMID:25732851 NCBI chrNW_004624737:4,795,054...4,800,830
Ensembl chrNW_004624737:4,791,628...4,800,989 		JBrowse link
G Rdh11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:33,283,336...33,295,797
Ensembl chrNW_004624734:33,283,497...33,295,091 		JBrowse link
G Rdh5 retinol dehydrogenase 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624802:12,293,578...12,299,981
Ensembl chrNW_004624802:12,290,688...12,304,712 		JBrowse link
G Retsat retinol saturase involved_in ISO (PMID:15358783) MGI PMID:15358783 NCBI chrNW_004624749:17,775,009...17,787,173
Ensembl chrNW_004624749:17,775,002...17,786,873 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO (PMID:16150724)
(PMID:25112876) 		UniProt PMID:16150724 PMID:25112876 NCBI chrNW_004624742:27,302,222...27,319,549
Ensembl chrNW_004624742:27,302,453...27,319,203 		JBrowse link
G Ttr transthyretin involved_in ISO (PMID:11036082) MGI PMID:11036082 NCBI chrNW_004624770:1,255,401...1,262,019
Ensembl chrNW_004624770:1,251,716...1,262,213 		JBrowse link
retinol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:12851412) MGI PMID:12851412 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855 		JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624891:49,479...53,290
Ensembl chrNW_004624891:41,890...52,628 		JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624735:12,525,120...12,535,436
Ensembl chrNW_004624735:12,525,284...12,535,193 		JBrowse link
G LOC101700953 alcohol dehydrogenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004625009:103,092...118,888 JBrowse link
G LOC101701066 cytochrome P450 1B1 involved_in ISO (PMID:10681376), (PMID:15258110)
(PMID:15258110) 		UniProt PMID:10681376 PMID:15258110 NCBI chrNW_004624738:19,639,215...19,647,807
Ensembl chrNW_004624738:19,638,456...19,647,497 		JBrowse link
G LOC101707509 cytochrome P450 1A1 involved_in ISO (PMID:10681376) UniProt PMID:10681376 NCBI chrNW_004627988:7...1,323 JBrowse link
G LOC101723971 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624886:3,746,074...3,762,257
Ensembl chrNW_004624886:3,746,379...3,766,774 		JBrowse link
G Lrat lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:18093970) RGD
TreeGrafter
MGI
InterPro		 PMID:2253789 PMID:8460936 PMID:9244401 PMID:14642897 PMID:18093970 GO_REF:0000002 GO_REF:0000118 RGD:1599829 RGD:1599831 RGD:1599832 RGD:6484737 NCBI chrNW_004624853:2,936,426...2,941,993
Ensembl chrNW_004624853:2,936,109...2,945,101 		JBrowse link
G Plb1 phospholipase B1 involved_in ISO
IEA 		RGD
GOC		 PMID:8117729 GO_REF:0000108 RGD:6903951 NCBI chrNW_004624738:10,454,878...10,580,378
Ensembl chrNW_004624738:10,455,186...10,569,907 		JBrowse link
G Pnpla4 patatin like domain 4, phospholipase and triacylglycerol lipase involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624834:5,497,109...5,529,912
Ensembl chrNW_004624834:5,496,617...5,528,555 		JBrowse link
G Rbp1 retinol binding protein 1 acts_upstream_of_or_within ISO (PMID:15193143), (PMID:15765518) RGD
MGI		 PMID:14642897 PMID:15193143 PMID:15765518 RGD:6484737 NCBI chrNW_004624730:16,091,863...16,119,591
Ensembl chrNW_004624730:16,091,863...16,119,591 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in
acts_upstream_of_or_within 		ISO (PMID:10232633)
(PMID:18093970) 		BHF-UCL
MGI		 PMID:10232633 PMID:18093970 NCBI chrNW_004624737:4,795,054...4,800,830
Ensembl chrNW_004624737:4,791,628...4,800,989 		JBrowse link
G Rdh10 retinol dehydrogenase 10 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624744:17,838,047...17,868,423
Ensembl chrNW_004624744:17,837,609...17,868,431 		JBrowse link
G Rdh11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:33,283,336...33,295,797
Ensembl chrNW_004624734:33,283,497...33,295,091 		JBrowse link
G Rdh12 retinol dehydrogenase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:33,256,469...33,266,085
Ensembl chrNW_004624734:33,254,432...33,266,140 		JBrowse link
G Rdh14 retinol dehydrogenase 14 acts_upstream_of_or_within
involved_in 		ISO (PMID:25533474)
(PMID:12226107) 		MGI
UniProt		 PMID:12226107 PMID:25533474 NCBI chrNW_004624738:1,393,157...1,397,587 JBrowse link
G Rdh8 retinol dehydrogenase 8 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15755727) MGI
TreeGrafter		 PMID:15755727 GO_REF:0000118 NCBI chrNW_004624828:2,254,570...2,259,512
Ensembl chrNW_004624828:2,253,995...2,260,315 		JBrowse link
G Retsat retinol saturase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:17,775,009...17,787,173
Ensembl chrNW_004624749:17,775,002...17,786,873 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO
IEA 		RGD
GOC		 PMID:3603006 GO_REF:0000108 RGD:9585656 NCBI chrNW_004624742:27,302,222...27,319,549
Ensembl chrNW_004624742:27,302,453...27,319,203 		JBrowse link
sesquiterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh3a2 aldehyde dehydrogenase 3 family member A2 involved_in ISO (PMID:18035827) UniProt PMID:18035827 NCBI chrNW_004624849:5,911,711...5,941,706
Ensembl chrNW_004624849:5,912,273...5,938,007 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lss lanosterol synthase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624745:31,301,648...31,325,283
Ensembl chrNW_004624745:31,306,807...31,325,199 		JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within ISO (PMID:27354281) MGI PMID:27354281 NCBI chrNW_004624737:49,471...82,981
Ensembl chrNW_004624737:49,371...83,514 		JBrowse link
G Lrat lecithin retinol acyltransferase acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:11108736) MGI
TreeGrafter		 PMID:11108736 GO_REF:0000118 NCBI chrNW_004624853:2,936,426...2,941,993
Ensembl chrNW_004624853:2,936,109...2,945,101 		JBrowse link
G Rbp1 retinol binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:16,091,863...16,119,591
Ensembl chrNW_004624730:16,091,863...16,119,591 		JBrowse link
xanthophyll catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in ISO (PMID:21106934) UniProt PMID:21106934 NCBI chrNW_004624784:7,324,312...7,353,733
Ensembl chrNW_004624784:7,334,472...7,353,802 		JBrowse link
xanthophyll metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within ISO (PMID:25701869) MGI PMID:25701869 NCBI chrNW_004624784:7,324,312...7,353,733
Ensembl chrNW_004624784:7,334,472...7,353,802 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinoid isomerohydrolase RPE65 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:27,302,222...27,319,549
Ensembl chrNW_004624742:27,302,453...27,319,203 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17646
    cellular process 17217
      metabolic process 10993
        primary metabolic process 9826
          lipid metabolic process 1279
            isoprenoid metabolic process 89
              terpenoid metabolic process 66
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate metabolic process + 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process + 0
                diterpenoid metabolic process + 59
                farnesyl diphosphate metabolic process + 4
                geranyl diphosphate metabolic process + 0
                geranylgeranyl diphosphate metabolic process + 0
                monoterpenoid metabolic process + 1
                phytyl diphosphate metabolic process + 0
                polyterpenoid metabolic process + 0
                sesquiterpenoid metabolic process + 1
                terpenoid biosynthetic process + 15
                terpenoid catabolic process + 8
                tetraterpenoid metabolic process + 3
                triterpenoid metabolic process + 2
paths to the root