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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid metabolic process
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Accession:GO:0006721 term browser browse the term
Definition:The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups.
Synonyms:exact_synonym: terpenoid metabolism


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9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:27,672,422...27,695,029
Ensembl chr 1:27,673,024...27,694,868 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:13,859,935...13,881,432
Ensembl chr36:13,866,959...13,880,179 		JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789 		JBrowse link
beta-carotene metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO1 beta-carotene oxygenase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:70,598,743...70,637,273
Ensembl chr 5:70,599,284...70,637,017 		JBrowse link
carotenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:20,914,658...20,969,847
Ensembl chr 5:20,915,647...20,964,177 		JBrowse link
G PTS 6-pyruvoyltetrahydropterin synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:20,883,128...20,912,318
Ensembl chr 5:20,896,236...20,912,297 		JBrowse link
diterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRH corticotropin releasing hormone ISO forskolin RGD PMID:21664419 RGD:5490546 NCBI chr29:15,831,944...15,840,560
Ensembl chr29:15,831,944...15,834,384 		JBrowse link
G EGFR epidermal growth factor receptor ISO taxanes RGD PMID:21448670 RGD:5131453 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631 		JBrowse link
G PGR progesterone receptor ISO forskolin, phorbol 12-myristate 13-acetate RGD PMID:8344215 RGD:1601291 NCBI chr21:447,197...552,511
Ensembl chr21:447,319...552,511 		JBrowse link
G SLC12A1 solute carrier family 12 member 1 ISO forskolin RGD PMID:19592485 RGD:7242914 NCBI chr30:14,458,373...14,548,870
Ensembl chr30:14,459,606...14,547,694 		JBrowse link
G SRD5A1 steroid 5 alpha-reductase 1 ISO forskolin RGD PMID:14997014 RGD:4891943 NCBI chr34:7,118,814...7,144,828
Ensembl chr34:7,118,814...7,144,828 		JBrowse link
farnesol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II) involved_in ISO (PMID:21187079) UniProt PMID:21187079 NCBI chr 2:30,661,333...30,691,283
Ensembl chr 2:30,674,558...30,690,043 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDPS farnesyl diphosphate synthase involved_in ISO
IBA 		RGD
GO_Central		 PMID:8188698 GO_REF:0000033 RGD:2316305 NCBI chr 7:42,241,086...42,250,373
Ensembl chr 7:42,241,107...42,250,225 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA
IBA 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:66,633,706...66,654,005
Ensembl chr 4:66,633,572...66,652,196 		JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA
IBA 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr17:56,679,942...56,698,521
Ensembl chr17:56,680,301...56,698,419 		JBrowse link
farnesyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:93,037,252...93,040,150
Ensembl chr 1:93,037,252...93,038,181 		JBrowse link
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107
farnesyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDFT1 farnesyl-diphosphate farnesyltransferase 1 involved_in ISO
IBA
IEA 		RGD
GO_Central
InterPro		 PMID:16440058 GO_REF:0000002 GO_REF:0000033 RGD:1626611 NCBI chr25:26,060,031...26,093,515
Ensembl chr25:26,060,386...26,093,582 		JBrowse link
geranyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:93,037,252...93,040,150
Ensembl chr 1:93,037,252...93,038,181 		JBrowse link
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107
geranylgeranyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:93,037,252...93,040,150
Ensembl chr 1:93,037,252...93,038,181 		JBrowse link
G PLPP6 phospholipid phosphatase 6 involved_in IEA Ensembl GO_REF:0000107
monoterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:37,818,400...37,824,192
Ensembl chr30:37,799,140...37,824,135 		JBrowse link
G CYP2C41 cytochrome P450 2C41 involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082
G CYP2D15 cytochrome P450 family 2 subfamily D member 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:23,255,259...23,259,380
Ensembl chr10:23,255,249...23,259,298 		JBrowse link
G CYP2E1 cytochrome P450 family 2 subfamily E member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:41,079,164...41,089,188
Ensembl chr28:41,035,025...41,122,754 		JBrowse link
G CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082 NCBI chr 6:9,836,685...9,869,520
Ensembl chr 6:9,777,659...9,869,352 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II) involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr 2:30,661,333...30,691,283
Ensembl chr 2:30,674,558...30,690,043 		JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:42,406,327...42,530,157
Ensembl chr21:42,406,314...42,528,116 		JBrowse link
pentacyclic triterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HTRA2 HtrA serine peptidase 2 ISO asiatic acid RGD PMID:22296759 RGD:5688365 NCBI chr17:48,610,408...48,613,399
Ensembl chr17:48,610,408...48,613,399 		JBrowse link
phytol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH3A2 aldehyde dehydrogenase 3 family member A2 involved_in ISO (PMID:15110319) UniProt PMID:15110319 NCBI chr 5:40,515,768...40,641,377
Ensembl chr 5:40,515,030...40,641,463 		JBrowse link
G LOC477770 peroxisomal trans-2-enoyl-CoA reductase-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr28:7,144,785...7,145,693 JBrowse link
G PECR peroxisomal trans-2-enoyl-CoA reductase involved_in IBA GO_Central GO_REF:0000033 NCBI chr37:23,038,285...23,067,357
Ensembl chr37:23,038,285...23,067,357 		JBrowse link
G PECRP peroxisomal trans-2-enoyl-CoA reductase pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:18,208,561...18,209,744 JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303 		JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr10:1,124,322...1,134,138
Ensembl chr10:1,124,320...1,130,453 		JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGAT1 diacylglycerol O-acyltransferase 1 ISO RGD PMID:18000880 RGD:10400849 NCBI chr13:37,745,395...37,761,337
Ensembl chr13:37,741,706...37,756,916 		JBrowse link
G ISX intestine specific homeobox acts_upstream_of_or_within ISO (PMID:18093975) MGI PMID:18093975 NCBI chr10:28,993,515...29,011,736
Ensembl chr10:28,993,795...29,011,640 		JBrowse link
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:55,058,361...55,186,255
Ensembl chr 6:55,058,361...55,186,253 		JBrowse link
G AKR1C3 aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II) involved_in ISO (PMID:21851338) UniProt PMID:21851338 NCBI chr 2:30,661,333...30,691,283
Ensembl chr 2:30,674,558...30,690,043 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:27,672,422...27,695,029
Ensembl chr 1:27,673,024...27,694,868 		JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within 		IEA
IBA
ISO 		(PMID:25701869) Ensembl
GO_Central
MGI		 PMID:25701869 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:70,598,743...70,637,273
Ensembl chr 5:70,599,284...70,637,017 		JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:20,914,658...20,969,847
Ensembl chr 5:20,915,647...20,964,177 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:30,273,281...30,278,554
Ensembl chr17:30,272,749...30,278,554 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr19:23,374,295...23,400,054 JBrowse link
G DHRS4 hydrogenase/reductase 4 involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:4,046,532...4,058,498
Ensembl chr 8:4,046,544...4,084,744 		JBrowse link
G PTS 6-pyruvoyltetrahydropterin synthase involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:20,883,128...20,912,318
Ensembl chr 5:20,896,236...20,912,297 		JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within ISO (PMID:11562477) MGI PMID:11562477 NCBI chr28:7,822,936...7,830,735
Ensembl chr28:7,822,944...7,830,750 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303 		JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:41,651,970...41,669,661
Ensembl chr 8:41,614,921...41,669,576 		JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:102,539,363...102,552,749
Ensembl chr 1:102,539,124...102,554,027 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in ISO
IBA 		RGD
GO_Central		 PMID:21785167 GO_REF:0000033 RGD:6893661 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131 		JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr29:7,660,882...7,679,705
Ensembl chr29:7,661,633...7,679,622 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA 		RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within 		ISO
IEA 		RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 7:41,277,580...41,282,158
Ensembl chr 7:41,277,644...41,281,833 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr36:13,859,935...13,881,432
Ensembl chr36:13,866,959...13,880,179 		JBrowse link
G RBP1 retinol binding protein 1 involved_in ISO
IEA 		RGD
InterPro		 PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363 		JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in IEA
IBA 		Ensembl
GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr28:7,423,955...7,432,359
Ensembl chr28:7,428,772...7,432,370 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO
IEA
IBA 		RGD
UniProt
GO_Central
Ensembl		 PMID:21138835 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 RGD:6771354 NCBI chr17:50,633,397...50,653,882
Ensembl chr17:50,633,413...50,653,894 		JBrowse link
G CYP26C1 cytochrome P450, family 26, subfamily C, polypeptide 1 involved_in IEA
IBA 		Ensembl
UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr28:7,416,022...7,424,173 JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:15,883,248...15,889,508
Ensembl chr 6:15,881,636...15,889,186 		JBrowse link
G KLF9 KLF transcription factor 9 acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr 1:87,109,310...87,164,636
Ensembl chr 1:87,109,450...87,111,525 		JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr27:1,802,587...1,861,187
Ensembl chr27:1,805,184...1,847,226 		JBrowse link
G STRAP serine/threonine kinase receptor associated protein acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr27:30,800,853...30,817,578
Ensembl chr27:30,675,247...30,817,388 		JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:10191271)
(PMID:16207763)
(PMID:12808103), (PMID:12851412) 		MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in 		ISO
IEA 		RGD
Ensembl		 PMID:12547725 GO_REF:0000107 RGD:1576367 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within
involved_in 		IEA Ensembl GO_REF:0000107 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:27,672,422...27,695,029
Ensembl chr 1:27,673,024...27,694,868 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within ISO (PMID:9826179) MGI PMID:9826179 NCBI chr 7:41,277,580...41,282,158
Ensembl chr 7:41,277,644...41,281,833 		JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15531370) Ensembl
MGI		 PMID:15531370 GO_REF:0000107 NCBI chr28:7,423,955...7,432,359
Ensembl chr28:7,428,772...7,432,370 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:50,633,397...50,653,882
Ensembl chr17:50,633,413...50,653,894 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr19:23,374,295...23,400,054 JBrowse link
G CYP2C18 cytochrome P450 2C21 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr28:8,727,010...8,750,427
Ensembl chr28:8,727,019...8,750,587 		JBrowse link
G CYP2S1 cytochrome P450 family 2 subfamily S member 1 involved_in ISO (PMID:12711469) UniProt PMID:12711469 NCBI chr 1:112,735,586...112,747,534
Ensembl chr 1:112,736,706...112,747,555 		JBrowse link
G CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 6:9,836,685...9,869,520
Ensembl chr 6:9,777,659...9,869,352 		JBrowse link
G LOC100856515 alcohol dehydrogenase 1-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr32:21,383,276...21,397,237 JBrowse link
G LOC100856533 alcohol dehydrogenase E chain involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr32:21,422,428...21,437,058 JBrowse link
G LOC489851 cytochrome P450 3A12-like involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 6:9,722,401...9,758,759 JBrowse link
G RBP1 retinol binding protein 1 acts_upstream_of_or_within ISO (PMID:15193143) MGI PMID:15193143 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363 		JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:7499345 RGD:1299624 NCBI chr10:1,124,322...1,134,138
Ensembl chr10:1,124,320...1,130,453 		JBrowse link
G SCPEP1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chr 9:31,770,494...31,803,741
Ensembl chr 9:31,774,602...31,803,741 		JBrowse link
retinoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:21,282,526...21,299,387
Ensembl chr32:21,282,890...21,299,328 		JBrowse link
G ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within ISO (PMID:12027900) MGI PMID:12027900 NCBI chr32:21,249,459...21,261,130
Ensembl chr32:21,249,739...21,265,048 		JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in ISO (PMID:12732097) UniProt PMID:12732097 NCBI chr14:2,991,888...3,006,941
Ensembl chr14:2,991,888...3,006,940 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 involved_in ISO PMID:7832787 UniProt PMID:7832787 RGD:11558002 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789 		JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:70,598,743...70,637,273
Ensembl chr 5:70,599,284...70,637,017 		JBrowse link
G CLPS colipase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,911,551...4,913,620
Ensembl chr12:4,911,549...4,914,427 		JBrowse link
G CYP2J2 cytochrome P450 family 2 subfamily J member 2 ISO RGD PMID:9606960 RGD:1625388 NCBI chr 5:49,942,241...49,986,603
Ensembl chr 5:49,942,193...49,984,617 		JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:37,745,395...37,761,337
Ensembl chr13:37,741,706...37,756,916 		JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:83,826,361...83,865,412
Ensembl chr 2:83,826,374...83,865,426 		JBrowse link
G DHRS4 hydrogenase/reductase 4 involved_in ISO (PMID:12604222) UniProt PMID:12604222 NCBI chr 8:4,046,532...4,058,498
Ensembl chr 8:4,046,544...4,084,744 		JBrowse link
G LDLR low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:50,115,175...50,152,443
Ensembl chr20:50,048,736...50,152,355 		JBrowse link
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within ISO (PMID:27354281) MGI PMID:27354281 NCBI chr26:38,892,771...38,918,441
Ensembl chr26:38,893,337...38,918,436 		JBrowse link
G LOC100856533 alcohol dehydrogenase E chain acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr32:21,422,428...21,437,058 JBrowse link
G LPL lipoprotein lipase involved_in ISO (PMID:25589507) MGI PMID:25589507 NCBI chr25:37,078,306...37,102,729
Ensembl chr25:37,079,756...37,102,700 		JBrowse link
G LRAT lecithin retinol acyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:52,399,773...52,409,590
Ensembl chr15:52,399,544...52,406,176 		JBrowse link
G PNLIP pancreatic lipase involved_in ISO (PMID:10769148) MGI PMID:10769148 NCBI chr28:27,139,028...27,156,457
Ensembl chr28:27,139,230...27,212,178 		JBrowse link
G PNPLA2 patatin like phospholipase domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:45,182,569...45,187,937
Ensembl chr18:45,182,566...45,187,268 		JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,671,345...14,675,000
Ensembl chr16:14,671,130...14,674,926 		JBrowse link
G RBP1 retinol binding protein 1 involved_in ISO (PMID:10487743) MGI PMID:10487743 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363 		JBrowse link
G RBP2 retinol binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:35,619,215...35,642,249
Ensembl chr23:35,619,221...35,642,213 		JBrowse link
G RBP4 retinol binding protein 4 involved_in ISO (PMID:25732851) MGI PMID:25732851 NCBI chr28:7,822,936...7,830,735
Ensembl chr28:7,822,944...7,830,750 		JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:41,651,970...41,669,661
Ensembl chr 8:41,614,921...41,669,576 		JBrowse link
G RDH5 retinol dehydrogenase 5 involved_in IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr10:120,386...125,195
Ensembl chr10:120,057...125,197 		JBrowse link
G RETSAT retinol saturase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:39,668,185...39,682,166
Ensembl chr17:39,668,256...39,680,560 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in ISS
IDA
IEA 		(PMID:16150724) UniProt
Ensembl		 PMID:16150724 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131 		JBrowse link
G TTR transthyretin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:57,940,354...57,947,084
Ensembl chr 7:57,914,381...57,947,058 		JBrowse link
retinol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:21,282,526...21,299,387
Ensembl chr32:21,282,890...21,299,328 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:12851412) MGI PMID:12851412 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789 		JBrowse link
G AWAT2 acyl-CoA wax alcohol acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:54,516,465...54,531,450
Ensembl chr  X:54,516,776...54,531,450 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IEA
ISS 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866 		JBrowse link
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IEA
ISS 		UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 NCBI chr30:37,818,400...37,824,192
Ensembl chr30:37,799,140...37,824,135 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:30,273,281...30,278,554
Ensembl chr17:30,272,749...30,278,554 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013), (PMID:28701464) UniProt PMID:27059013 PMID:28701464 NCBI chr19:23,374,295...23,400,054 JBrowse link
G CYP2D15 cytochrome P450 family 2 subfamily D member 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:23,255,259...23,259,380
Ensembl chr10:23,255,249...23,259,298 		JBrowse link
G CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 involved_in ISO (PMID:10681376) UniProt PMID:10681376 NCBI chr 6:9,836,685...9,869,520
Ensembl chr 6:9,777,659...9,869,352 		JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr13:37,745,395...37,761,337
Ensembl chr13:37,741,706...37,756,916 		JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 2:83,826,361...83,865,412
Ensembl chr 2:83,826,374...83,865,426 		JBrowse link
G DHRS7 dehydrogenase/reductase 7 involved_in IEA GOC GO_REF:0000108 NCBI chr 8:35,251,988...35,269,880
Ensembl chr 8:35,251,975...35,269,869 		JBrowse link
G HSD17B6 hydroxysteroid 17-beta dehydrogenase 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:948,982...1,016,651
Ensembl chr10:1,000,199...1,016,420 		JBrowse link
G LIPE lipase E, hormone sensitive type involved_in IEA GOC GO_REF:0000108 NCBI chr 1:111,987,862...112,006,492
Ensembl chr 1:111,988,029...112,006,461 		JBrowse link
G LOC100856515 alcohol dehydrogenase 1-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr32:21,383,276...21,397,237 JBrowse link
G LOC100856533 alcohol dehydrogenase E chain involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr32:21,422,428...21,437,058 JBrowse link
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		RGD
Ensembl
GO_Central
InterPro		 PMID:2253789 PMID:8460936 PMID:9244401 PMID:14642897 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 RGD:1599829 RGD:1599831 RGD:1599832 RGD:6484737 NCBI chr15:52,399,773...52,409,590
Ensembl chr15:52,399,544...52,406,176 		JBrowse link
G PLB1 phospholipase B1 involved_in ISO
IEA 		RGD
GOC		 PMID:8117729 GO_REF:0000108 RGD:6903951 NCBI chr17:22,420,679...22,558,318
Ensembl chr17:22,440,651...22,557,737 		JBrowse link
G PNPLA2 patatin like phospholipase domain containing 2 involved_in IEA GOC GO_REF:0000108 NCBI chr18:45,182,569...45,187,937
Ensembl chr18:45,182,566...45,187,268 		JBrowse link
G PNPLA4 patatin like phospholipase domain containing 4 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:4,775,702...4,925,027
Ensembl chr  X:4,874,240...4,924,976 		JBrowse link
G RBP1 retinol binding protein 1 acts_upstream_of_or_within ISO (PMID:15193143)
(PMID:15193143), (PMID:15765518) 		RGD
MGI		 PMID:14642897 PMID:15193143 PMID:15765518 RGD:6484737 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363 		JBrowse link
G RBP4 retinol binding protein 4 involved_in
acts_upstream_of_or_within 		ISO (PMID:10232633)
(PMID:18093970) 		BHF-UCL
MGI		 PMID:10232633 PMID:18093970 NCBI chr28:7,822,936...7,830,735
Ensembl chr28:7,822,944...7,830,750 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303 		JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:41,651,970...41,669,661
Ensembl chr 8:41,614,921...41,669,576 		JBrowse link
G RDH12 retinol dehydrogenase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:41,685,045...41,696,120
Ensembl chr 8:41,684,996...41,695,447 		JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:102,539,363...102,552,749
Ensembl chr 1:102,539,124...102,554,027 		JBrowse link
G RDH14 retinol dehydrogenase 14 acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:12226107) Ensembl
UniProt		 PMID:12226107 GO_REF:0000107 NCBI chr17:13,843,278...13,848,498 JBrowse link
G RDH16 retinol dehydrogenase 16 involved_in ISO
IBA 		RGD
GO_Central		 PMID:7499345 GO_REF:0000033 RGD:1299624 NCBI chr10:1,124,322...1,134,138
Ensembl chr10:1,124,320...1,130,453 		JBrowse link
G RDH8 retinol dehydrogenase 8 involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr20:51,029,633...51,035,910
Ensembl chr20:51,029,609...51,035,951 		JBrowse link
G RETSAT retinol saturase involved_in IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:39,668,185...39,682,166
Ensembl chr17:39,668,256...39,680,560 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in ISO
IEA 		RGD
GOC		 PMID:3603006 GO_REF:0000108 RGD:9585656 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131 		JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA
IBA 		Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr29:7,660,882...7,679,705
Ensembl chr29:7,661,633...7,679,622 		JBrowse link
G SDR9C7 short chain dehydrogenase/reductase family 9C member 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:1,112,832...1,121,238
Ensembl chr10:1,112,896...1,120,720 		JBrowse link
sesquiterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH3A2 aldehyde dehydrogenase 3 family member A2 involved_in ISO (PMID:18035827) UniProt PMID:18035827 NCBI chr 5:40,515,768...40,641,377
Ensembl chr 5:40,515,030...40,641,463 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LSS lanosterol synthase involved_in IEA InterPro GO_REF:0000002 NCBI chr31:39,479,255...39,502,439
Ensembl chr31:39,480,581...39,503,042 		JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within ISO (PMID:27354281) MGI PMID:27354281 NCBI chr26:38,892,771...38,918,441
Ensembl chr26:38,893,337...38,918,436 		JBrowse link
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within 		IBA
IEA 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:52,399,773...52,409,590
Ensembl chr15:52,399,544...52,406,176 		JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363 		JBrowse link
xanthophyll catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:20,914,658...20,969,847
Ensembl chr 5:20,915,647...20,964,177 		JBrowse link
G PTS 6-pyruvoyltetrahydropterin synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:20,883,128...20,912,318
Ensembl chr 5:20,896,236...20,912,297 		JBrowse link
xanthophyll metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:20,914,658...20,969,847
Ensembl chr 5:20,915,647...20,964,177 		JBrowse link
G PTS 6-pyruvoyltetrahydropterin synthase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:20,883,128...20,912,318
Ensembl chr 5:20,896,236...20,912,297 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA
IBA
ISS 		Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22130
    cellular process 21660
      metabolic process 15378
        primary metabolic process 13957
          lipid metabolic process 1366
            isoprenoid metabolic process 111
              terpenoid metabolic process 88
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate metabolic process + 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process + 0
                diterpenoid metabolic process + 78
                farnesyl diphosphate metabolic process + 6
                geranyl diphosphate metabolic process + 2
                geranylgeranyl diphosphate metabolic process + 2
                monoterpenoid metabolic process + 5
                phytyl diphosphate metabolic process + 0
                polyterpenoid metabolic process + 0
                sesquiterpenoid metabolic process + 2
                terpenoid biosynthetic process + 17
                terpenoid catabolic process + 12
                tetraterpenoid metabolic process + 4
                triterpenoid metabolic process + 2
paths to the root