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ONTOLOGY REPORT - ANNOTATIONS

Term:terpenoid metabolic process
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Accession:GO:0006721 term browser browse the term
Definition:The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups.
Synonyms:exact_synonym: terpenoid metabolism


show annotations for term's descendants           Sort by:
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD PMID:8765131 RGD:2306683 NCBI chr15:53,664,968...53,672,277
Ensembl chr15:73,284,566...73,290,636 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:56,347,489...56,376,463
Ensembl chr2B:173,811,932...173,842,816 		JBrowse link
G RDH16 retinol dehydrogenase 16 acts_upstream_of_or_within ISO (PMID:11876656) MGI PMID:11876656 NCBI chr12:31,958,385...31,966,319
Ensembl chr12:32,212,746...32,219,624 		JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:17167544 RGD:2306320 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085 		JBrowse link
beta-carotene metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO1 beta-carotene oxygenase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:61,843,567...61,897,012
Ensembl chr16:81,270,577...81,323,088 		JBrowse link
carotenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:107,056,525...107,105,358
Ensembl chr11:110,899,703...110,942,547 		JBrowse link
diterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRH corticotropin releasing hormone ISO forskolin RGD PMID:21664419 RGD:5490546 NCBI chr 8:62,714,721...62,716,979
Ensembl chr 8:64,383,419...64,384,009 		JBrowse link
G EGFR epidermal growth factor receptor ISO taxanes RGD PMID:21448670 RGD:5131453 NCBI chr 7:55,614,042...55,807,285
Ensembl chr 7:56,046,296...56,111,615 		JBrowse link
G PGR progesterone receptor ISO forskolin, phorbol 12-myristate 13-acetate RGD PMID:8344215 RGD:1601291 NCBI chr11:95,997,677...96,098,866 JBrowse link
G SLC12A1 solute carrier family 12 member 1 ISO forskolin RGD PMID:19592485 RGD:7242914 NCBI chr15:27,155,331...27,252,995
Ensembl chr15:45,479,583...45,577,084 		JBrowse link
G SRD5A1 steroid 5 alpha-reductase 1 ISO forskolin RGD PMID:14997014 RGD:4891943 NCBI chr 5:6,953,795...6,996,010
Ensembl chr 5:6,629,093...6,664,264 		JBrowse link
farnesol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003 		JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,079,580...5,157,572
Ensembl chr10:5,081,214...5,139,812 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDPS farnesyl diphosphate synthase involved_in ISO
IEA 		RGD
TreeGrafter		 PMID:8188698 GO_REF:0000118 RGD:2316305 NCBI chr 1:130,653,316...130,665,196
Ensembl chr 1:134,258,968...134,270,237 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:67,067,001...67,091,786
Ensembl chr 5:72,116,228...72,141,050 		JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:82,778,489...82,798,987
Ensembl chr 1:117,775,770...117,796,679 		JBrowse link
farnesyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in ISO (PMID:20110354) UniProt PMID:20110354 NCBI chr 9:4,494,408...4,497,405 JBrowse link
farnesyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FDFT1 farnesyl-diphosphate farnesyltransferase 1 involved_in ISO
IEA 		RGD
TreeGrafter
InterPro		 PMID:16440058 GO_REF:0000002 GO_REF:0000118 RGD:1626611 NCBI chr 8:7,363,250...7,399,863 JBrowse link
geranyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in ISO (PMID:20110354) UniProt PMID:20110354 NCBI chr 9:4,494,408...4,497,405 JBrowse link
geranylgeranyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLPP6 phospholipid phosphatase 6 involved_in ISO (PMID:20110354) UniProt PMID:20110354 NCBI chr 9:4,494,408...4,497,405 JBrowse link
monoterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:53,692,877...53,699,279
Ensembl chr15:73,311,720...73,319,447 		JBrowse link
G CYP2C19 cytochrome P450 family 2 subfamily C member 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,375,255...91,465,215
Ensembl chr10:94,884,472...94,970,065 		JBrowse link
G CYP2C9 cytochrome P450 family 2 subfamily C member 9 involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082 NCBI chr10:91,547,865...91,598,918
Ensembl chr10:95,022,482...95,105,653 		JBrowse link
G CYP2E1 cytochrome P450 family 2 subfamily E member 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr10:134,839,025...134,852,719 JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,797,037...91,824,696
Ensembl chr 7:105,230,666...105,258,401 		JBrowse link
G LOC100988273 cytochrome P450 2D6-like involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082 NCBI chr22:23,022,449...23,031,627 JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,079,580...5,157,572
Ensembl chr10:5,081,214...5,139,812 		JBrowse link
G PRMT3 protein arginine methyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:20,412,419...20,538,295
Ensembl chr11:20,324,196...20,449,681 		JBrowse link
pentacyclic triterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HTRA2 HtrA serine peptidase 2 ISO asiatic acid RGD PMID:22296759 RGD:5688365 NCBI chr2A:74,596,020...74,599,790
Ensembl chr2A:76,102,240...76,106,152 		JBrowse link
phytol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH3A2 aldehyde dehydrogenase 3 family member A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:31,455,386...31,482,985
Ensembl chr17:36,599,835...36,628,102 		JBrowse link
G PECR peroxisomal trans-2-enoyl-CoA reductase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:103,300,621...103,344,638
Ensembl chr2B:221,902,404...221,945,134 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RDH10 retinol dehydrogenase 10 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689 		JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:21138835 RGD:6771354 NCBI chr12:31,958,385...31,966,319
Ensembl chr12:32,212,746...32,219,624 		JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DGAT1 diacylglycerol O-acyltransferase 1 ISO RGD PMID:18000880 RGD:10400849 NCBI chr 8:141,079,948...141,090,619
Ensembl chr 8:144,064,587...144,080,155 		JBrowse link
G ISX intestine specific homeobox acts_upstream_of_or_within ISO (PMID:18093975) MGI PMID:18093975 NCBI chr22:16,071,117...16,095,029
Ensembl chr22:33,917,642...33,938,908 		JBrowse link
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:96,659,703...96,784,876
Ensembl chr 1:95,386,266...95,514,589 		JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 ISO RGD PMID:20709016 RGD:6903952 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003 		JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,079,580...5,157,572
Ensembl chr10:5,081,214...5,139,812 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611 		JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:25701869) Ensembl
TreeGrafter
MGI		 PMID:25701869 GO_REF:0000107 GO_REF:0000118 NCBI chr16:61,843,567...61,897,012
Ensembl chr16:81,270,577...81,323,088 		JBrowse link
G BCO2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:107,056,525...107,105,358
Ensembl chr11:110,899,703...110,942,547 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150 		JBrowse link
G DHRS4 dehydrogenase/reductase 4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:12680773) MGI
TreeGrafter		 PMID:12680773 GO_REF:0000118 Ensembl chr14:22,831,756...22,846,695 JBrowse link
G LOC100986729 aldo-keto reductase family 1 member C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,003,610...5,020,648
Ensembl chr10:4,990,110...5,003,538 		JBrowse link
G LOC103783188 aldo-keto reductase family 1 member C2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:5,032,692...5,047,009 JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689 		JBrowse link
G RDH11 retinol dehydrogenase 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286 		JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in ISO
IEA 		RGD
TreeGrafter		 PMID:21785167 GO_REF:0000118 RGD:6893661 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904 		JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:52,746,371...52,769,269
Ensembl chr 8:50,113,413...50,137,717 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:21138835 RGD:6771354 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in ISO
IEA 		RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within 		ISO
IEA 		RGD
Ensembl		 PMID:15950969 PMID:21138835 GO_REF:0000107 RGD:6771322 RGD:6771354 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 ISO RGD PMID:15950969 RGD:6771322 NCBI chr 1:132,043,097...132,049,366
Ensembl chr 1:135,864,807...135,870,145 		JBrowse link
G DHRS9 dehydrogenase/reductase 9 ISO RGD PMID:15950969 PMID:21138835 RGD:6771322 RGD:6771354 NCBI chr2B:56,347,489...56,376,463
Ensembl chr2B:173,811,932...173,842,816 		JBrowse link
G RBP1 retinol binding protein 1 involved_in ISO
IEA 		RGD
InterPro		 PMID:15950969 GO_REF:0000002 RGD:6771322 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209 		JBrowse link
G RDH10 retinol dehydrogenase 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,817,623...89,822,024
Ensembl chr10:93,330,460...93,334,105 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in ISO
IEA 		RGD
UniProt
Ensembl		 PMID:21138835 GO_REF:0000107 GO_REF:0000117 RGD:6771354 NCBI chr2A:72,172,658...72,191,410
Ensembl chr2A:73,670,830...73,686,433 		JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,804,830...89,813,687
Ensembl chr10:93,317,798...93,325,315 		JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in ISO (PMID:26936974) UniProt PMID:26936974 NCBI chr 7:1,140,855...1,147,788
Ensembl chr 7:1,353,510...1,362,781 		JBrowse link
G KLF9 KLF transcription factor 9 acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr 9:54,387,404...54,417,095
Ensembl chr 9:69,142,283...69,170,664 		JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr12:35,338,492...35,374,462
Ensembl chr12:36,127,681...36,158,356 		JBrowse link
G STRAP serine/threonine kinase receptor associated protein acts_upstream_of_or_within ISO (PMID:9250660) MGI PMID:9250660 NCBI chr12:15,883,512...15,904,778
Ensembl chr12:16,279,956...16,300,746 		JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:91,726,870...91,741,824
Ensembl chr 4:102,388,575...102,435,079 		JBrowse link
G ADH6 alcohol dehydrogenase 6 (class V) involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:91,604,422...91,621,342
Ensembl chr 4:102,264,224...102,283,210 		JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:91,833,111...91,856,325
Ensembl chr 4:102,494,784...102,518,215 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:16207763)
(PMID:12808103), (PMID:12851412)
(PMID:10191271) 		MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in 		ISO
IEA 		RGD
Ensembl		 PMID:12547725 GO_REF:0000107 RGD:1576367 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396 		JBrowse link
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:132,685,904...132,732,194
Ensembl chr 6:136,782,957...136,815,611 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:132,043,097...132,049,366
Ensembl chr 1:135,864,807...135,870,145 		JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15531370) Ensembl
MGI		 PMID:15531370 GO_REF:0000107 NCBI chr10:89,817,623...89,822,024
Ensembl chr10:93,330,460...93,334,105 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:72,172,658...72,191,410
Ensembl chr2A:73,670,830...73,686,433 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150 		JBrowse link
G CYP2C8 cytochrome P450 family 2 subfamily C member 8 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr10:91,646,387...91,679,998
Ensembl chr10:95,157,661...95,186,620 		JBrowse link
G CYP2S1 cytochrome P450 family 2 subfamily S member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,185,893...38,200,064
Ensembl chr19:46,693,025...46,705,950 		JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,797,037...91,824,696
Ensembl chr 7:105,230,666...105,258,401 		JBrowse link
G CYP3A5 cytochrome P450 family 3 subfamily A member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,621,561...91,654,164
Ensembl chr 7:105,123,437...105,155,322 		JBrowse link
G CYP3A67 cytochrome P450 family 3 subfamily A member 67 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr 7:91,678,209...91,707,321
Ensembl chr 7:105,160,420...105,208,799 		JBrowse link
G LOC100970753 alcohol dehydrogenase 1C acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15193143)
(PMID:10358022), (PMID:12851412) 		MGI
TreeGrafter		 PMID:10358022 PMID:12851412 PMID:15193143 GO_REF:0000118 NCBI chr 4:91,756,817...91,773,056
Ensembl chr 4:102,388,575...102,435,079 		JBrowse link
G LOC100971436 alcohol dehydrogenase 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:91,697,663...91,712,314
Ensembl chr 4:102,359,419...102,374,101 		JBrowse link
G RBP1 retinol binding protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209 		JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:7499345 RGD:1299624 NCBI chr12:31,958,385...31,966,319
Ensembl chr12:32,212,746...32,219,624 		JBrowse link
G SCPEP1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chr17:51,055,293...51,084,032
Ensembl chr17:55,915,746...55,944,377 		JBrowse link
retinoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide involved_in ISO (PMID:15369820), (PMID:16787387) UniProt PMID:15369820 PMID:16787387 NCBI chr 4:91,726,870...91,741,824
Ensembl chr 4:102,388,575...102,435,079 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:91,522,444...91,543,086
Ensembl chr 4:102,183,956...102,206,923 		JBrowse link
G ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:91,470,304...91,487,854
Ensembl chr 4:102,134,375...102,151,902 		JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in ISO (PMID:16787387), (PMID:9600267) UniProt PMID:9600267 PMID:16787387 NCBI chr 4:91,833,111...91,856,325
Ensembl chr 4:102,494,784...102,518,215 		JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in ISO (PMID:12732097) UniProt PMID:12732097 NCBI chr 7:126,400,861...126,417,756
Ensembl chr 7:138,912,953...138,924,095 		JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 involved_in ISO PMID:7832787 UniProt PMID:7832787 RGD:11558002 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085 		JBrowse link
G BCO1 beta-carotene oxygenase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:61,843,567...61,897,012
Ensembl chr16:81,270,577...81,323,088 		JBrowse link
G CLPS colipase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,357,206...35,359,929
Ensembl chr 6:36,559,250...36,561,607 		JBrowse link
G CYP2J2 cytochrome P450 family 2 subfamily J member 2 ISO RGD PMID:9606960 RGD:1625388 NCBI chr 1:59,151,079...59,184,625
Ensembl chr 1:60,856,269...60,889,810 		JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:141,079,948...141,090,619
Ensembl chr 8:144,064,587...144,080,155 		JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:11,319,109...11,370,463
Ensembl chr 1:12,533,696...12,584,381 		JBrowse link
G DHRS4 dehydrogenase/reductase 4 involved_in ISO (PMID:12604222) UniProt PMID:12604222 Ensembl chr14:22,831,756...22,846,695 JBrowse link
G LDLR low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,640,225...10,683,728
Ensembl chr19:11,357,311...11,396,791 		JBrowse link
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:85,938,240...85,976,610
Ensembl chr10:89,477,082...89,516,874 		JBrowse link
G LOC100970753 alcohol dehydrogenase 1C acts_upstream_of_or_within ISO (PMID:12027900) MGI PMID:12027900 NCBI chr 4:91,756,817...91,773,056
Ensembl chr 4:102,388,575...102,435,079 		JBrowse link
G LOC134730598 alcohol dehydrogenase class-3-like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G LPL lipoprotein lipase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:19,164,541...19,193,100
Ensembl chr 8:16,113,415...16,142,966 		JBrowse link
G LRAT lecithin retinol acyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:147,110,568...147,119,706
Ensembl chr 4:158,928,607...158,937,747 		JBrowse link
G PNLIP pancreatic lipase involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:113,067,443...113,158,473
Ensembl chr10:116,568,273...116,589,729 		JBrowse link
G PNPLA2 patatin like domain 2, triacylglycerol lipase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:838,339...844,035
Ensembl chr11:881,934...886,896 		JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:141,953,600...141,956,991
Ensembl chr 7:154,106,275...154,109,635 		JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209 		JBrowse link
G RBP2 retinol binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:136,488,536...136,513,337
Ensembl chr 3:144,089,322...144,112,840 		JBrowse link
G RBP4 retinol binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887 		JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286 		JBrowse link
G RDH16 retinol dehydrogenase 16 involved_in ISO (PMID:9407098) UniProt PMID:9407098 NCBI chr12:31,958,385...31,966,319
Ensembl chr12:32,212,746...32,219,624 		JBrowse link
G RDH5 retinol dehydrogenase 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:33,186,871...33,191,539
Ensembl chr12:33,911,309...33,920,506 		JBrowse link
G RETSAT retinol saturase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:85,394,700...85,407,252
Ensembl chr2A:86,946,460...86,958,962 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904 		JBrowse link
G TTR transthyretin involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:24,809,707...24,816,713
Ensembl chr18:28,407,893...28,414,960 		JBrowse link
retinol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:91,726,870...91,741,824
Ensembl chr 4:102,388,575...102,435,079 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:91,522,444...91,543,086
Ensembl chr 4:102,183,956...102,206,923 		JBrowse link
G ADH6 alcohol dehydrogenase 6 (class V) involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:91,604,422...91,621,342
Ensembl chr 4:102,264,224...102,283,210 		JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide acts_upstream_of_or_within
involved_in 		ISO
IEA 		RGD
Ensembl
TreeGrafter		 PMID:10829036 GO_REF:0000107 GO_REF:0000118 RGD:631904 NCBI chr 4:91,833,111...91,856,325
Ensembl chr 4:102,494,784...102,518,215 		JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in ISO
IEA 		RGD
GOC		 PMID:20709016 GO_REF:0000108 RGD:6903952 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (PMID:12851412) MGI PMID:12851412 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085 		JBrowse link
G AWAT2 acyl-CoA wax alcohol acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:59,308,600...59,318,940
Ensembl chr  X:69,372,246...69,381,644 		JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr15:53,664,968...53,672,277
Ensembl chr15:73,284,566...73,290,636 		JBrowse link
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr15:53,692,877...53,699,279
Ensembl chr15:73,311,720...73,319,447 		JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:38,087,863...38,096,529
Ensembl chr2A:38,851,000...38,859,824 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 involved_in ISO (PMID:27059013), (PMID:28701464) UniProt PMID:27059013 PMID:28701464 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150 		JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,797,037...91,824,696
Ensembl chr 7:105,230,666...105,258,401 		JBrowse link
G DGAT1 diacylglycerol O-acyltransferase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 8:141,079,948...141,090,619
Ensembl chr 8:144,064,587...144,080,155 		JBrowse link
G DGAT2 diacylglycerol O-acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr11:70,824,791...70,857,530
Ensembl chr11:74,126,169...74,158,854 		JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:11,319,109...11,370,463
Ensembl chr 1:12,533,696...12,584,381 		JBrowse link
G DHRS7 dehydrogenase/reductase 7 involved_in IEA GOC GO_REF:0000108 NCBI chr14:40,750,407...40,771,106
Ensembl chr14:59,014,182...59,034,877 		JBrowse link
G LIPE lipase E, hormone sensitive type involved_in IEA GOC GO_REF:0000108 NCBI chr19:39,289,162...39,315,067
Ensembl chr19:47,881,292...47,907,066 		JBrowse link
G LOC100969627 cytochrome P450 2D6 involved_in IEA UniProt GO_REF:0000041 NCBI chr22:23,035,569...23,045,491 JBrowse link
G LOC100970753 alcohol dehydrogenase 1C acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:10358022), (PMID:12851412)
(PMID:15193143) 		MGI
TreeGrafter		 PMID:10358022 PMID:12851412 PMID:15193143 GO_REF:0000118 NCBI chr 4:91,756,817...91,773,056
Ensembl chr 4:102,388,575...102,435,079 		JBrowse link
G LOC100971436 alcohol dehydrogenase 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:91,697,663...91,712,314
Ensembl chr 4:102,359,419...102,374,101 		JBrowse link
G LOC100988273 cytochrome P450 2D6-like involved_in IEA UniProt GO_REF:0000041 NCBI chr22:23,022,449...23,031,627 JBrowse link
G LRAT lecithin retinol acyltransferase acts_upstream_of_or_within
involved_in 		ISO
IEA 		RGD
Ensembl
TreeGrafter
InterPro		 PMID:2253789 PMID:8460936 PMID:9244401 PMID:14642897 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1599829 RGD:1599831 RGD:1599832 RGD:6484737 NCBI chr 4:147,110,568...147,119,706
Ensembl chr 4:158,928,607...158,937,747 		JBrowse link
G PLB1 phospholipase B1 involved_in ISO
IEA 		RGD
GOC		 PMID:8117729 GO_REF:0000108 RGD:6903951 NCBI chr2A:28,502,449...28,650,348
Ensembl chr2A:28,584,636...28,730,640 		JBrowse link
G PNLIP pancreatic lipase involved_in IEA GOC GO_REF:0000108 NCBI chr10:113,067,443...113,158,473
Ensembl chr10:116,568,273...116,589,729 		JBrowse link
G PNPLA2 patatin like domain 2, triacylglycerol lipase involved_in IEA GOC GO_REF:0000108 NCBI chr11:838,339...844,035
Ensembl chr11:881,934...886,896 		JBrowse link
G PNPLA4 patatin like domain 4, phospholipase and triacylglycerol lipase involved_in IEA GOC GO_REF:0000108 Ensembl chr  X:7,756,047...7,786,634 JBrowse link
G RBP1 retinol binding protein 1 acts_upstream_of_or_within ISO
IEA 		RGD
Ensembl		 PMID:14642897 GO_REF:0000107 RGD:6484737 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209 		JBrowse link
G RBP4 retinol binding protein 4 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689 		JBrowse link
G RDH11 retinol dehydrogenase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286 		JBrowse link
G RDH12 retinol dehydrogenase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,297,854...48,314,502
Ensembl chr14:67,180,696...67,192,345 		JBrowse link
G RDH13 retinol dehydrogenase 13 involved_in IEA GOC GO_REF:0000108 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267 		JBrowse link
G RDH14 retinol dehydrogenase 14 acts_upstream_of_or_within
involved_in 		ISO (PMID:25533474)
(PMID:12226107) 		MGI
UniProt		 PMID:12226107 PMID:25533474 NCBI chr2A:18,534,357...18,540,325 JBrowse link
G RDH16 retinol dehydrogenase 16 ISO RGD PMID:7499345 RGD:1299624 NCBI chr12:31,958,385...31,966,319
Ensembl chr12:32,212,746...32,219,624 		JBrowse link
G RDH8 retinol dehydrogenase 8 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:9,565,918...9,575,017
Ensembl chr19:10,226,185...10,235,114 		JBrowse link
G RETSAT retinol saturase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:85,394,700...85,407,252
Ensembl chr2A:86,946,460...86,958,962 		JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 involved_in ISO
IEA 		RGD
GOC		 PMID:3603006 GO_REF:0000108 RGD:9585656 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904 		JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:52,746,371...52,769,269
Ensembl chr 8:50,113,413...50,137,717 		JBrowse link
sesquiterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH3A2 aldehyde dehydrogenase 3 family member A2 involved_in ISO (PMID:18035827) UniProt PMID:18035827 NCBI chr17:31,455,386...31,482,985
Ensembl chr17:36,599,835...36,628,102 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LSS lanosterol synthase involved_in IEA InterPro GO_REF:0000002 NCBI chr21:32,535,564...32,571,379
Ensembl chr21:45,787,252...45,822,181 		JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIPA lipase A, lysosomal acid type acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:85,938,240...85,976,610
Ensembl chr10:89,477,082...89,516,874 		JBrowse link
G LRAT lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:147,110,568...147,119,706
Ensembl chr 4:158,928,607...158,937,747 		JBrowse link
G RBP1 retinol binding protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209 		JBrowse link
xanthophyll catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:107,056,525...107,105,358
Ensembl chr11:110,899,703...110,942,547 		JBrowse link
xanthophyll metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCO2 beta-carotene oxygenase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:107,056,525...107,105,358
Ensembl chr11:110,899,703...110,942,547 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE65 retinoid isomerohydrolase RPE65 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18867
      metabolic process 12794
        primary metabolic process 11190
          lipid metabolic process 1320
            isoprenoid metabolic process 116
              terpenoid metabolic process 93
                4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate metabolic process + 0
                GDP-alpha-D-mannosylchitobiosyldiphosphodolichol metabolic process + 0
                diterpenoid metabolic process + 83
                farnesyl diphosphate metabolic process + 5
                geranyl diphosphate metabolic process + 1
                geranylgeranyl diphosphate metabolic process + 1
                monoterpenoid metabolic process + 6
                phytyl diphosphate metabolic process + 0
                polyterpenoid metabolic process + 0
                sesquiterpenoid metabolic process + 3
                terpenoid biosynthetic process + 17
                terpenoid catabolic process + 11
                tetraterpenoid metabolic process + 3
                triterpenoid metabolic process + 2
paths to the root