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ONTOLOGY REPORT - ANNOTATIONS

Term:glycosphingolipid biosynthetic process
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Accession:GO:0006688 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide.
Synonyms:exact_synonym: glycosphingolipid anabolism;   glycosphingolipid biosynthesis;   glycosphingolipid formation;   glycosphingolipid synthesis


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glycosphingolipid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A3galt2 alpha 1,3-galactosyltransferase 2 acts_upstream_of_or_within
involved_in		 ISO
IGI		 (PMID:22875802) RGD
MGI		 PMID:10854427 PMID:22875802 GO_REF:0000008 GO_REF:0000096 MGI:4417868 RGD:1299594 NCBI chr 4:128,653,051...128,663,091
Ensembl chr 4:128,649,157...128,663,091 		JBrowse link
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:127,001,025...127,008,209
Ensembl chr10:127,001,094...127,008,199 		JBrowse link
G B4galt6 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:9593693 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:70807 NCBI chr18:20,817,656...20,879,461
Ensembl chr18:20,817,656...20,879,461 		JBrowse link
G Fut4 fucosyltransferase 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:14,659,755...14,663,418
Ensembl chr 9:14,659,616...14,663,689 		JBrowse link
G Fut9 fucosyltransferase 9 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:25,609,333...25,800,003
Ensembl chr 4:25,609,332...25,800,244 		JBrowse link
G St6galnac5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IDA (MGI:1346847|PMID:10521438) BHF-UCL PMID:10521438 MGI:1346847 NCBI chr 3:152,525,522...152,687,847
Ensembl chr 3:152,522,718...152,687,883 		JBrowse link
G St8sia5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr18:77,273,529...77,343,146
Ensembl chr18:77,273,535...77,346,467 		JBrowse link
G Tm9sf2 transmembrane 9 superfamily member 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:122,342,290...122,397,015
Ensembl chr14:122,344,450...122,397,016 		JBrowse link
galactosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galt1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:67,395,528...67,953,226
Ensembl chr 2:67,396,215...67,953,033 		JBrowse link
G B3galt2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:143,516,435...143,525,675
Ensembl chr 1:143,516,402...143,530,352 		JBrowse link
G B4galt3 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 1:171,097,898...171,104,468
Ensembl chr 1:171,097,898...171,104,469 		JBrowse link
G Fa2h fatty acid 2-hydroxylase involved_in IMP
ISO
IDA		 (MGI:3826747|PMID:18815260)
(MGI:3696647|PMID:15658937)		 UniProt
MGI		 PMID:15658937 PMID:18815260 GO_REF:0000096 MGI:3696647 MGI:3826747 MGI:4417868 NCBI chr 8:112,071,770...112,120,453
Ensembl chr 8:112,071,767...112,120,456 		JBrowse link
G Gal3st1 galactose-3-O-sulfotransferase 1 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:10727929) MGI
GO_Central		 PMID:10727929 GO_REF:0000033 NCBI chr11:3,933,636...3,949,328
Ensembl chr11:3,933,636...3,949,326 		JBrowse link
G Ugt8a UDP galactosyltransferase 8A involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr 3:125,655,071...125,732,301
Ensembl chr 3:125,658,920...125,732,268 		JBrowse link
ganglioside biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galt4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:34,168,886...34,170,462
Ensembl chr17:34,168,883...34,170,462 		JBrowse link
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 involved_in
acts_upstream_of_or_within		 IMP
IBA
IGI
ISO		 (MGI:83232|PMID:8855236)
(PMID:10021458)		 UniProt
GO_Central
MGI		 PMID:8855236 PMID:10021458 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 MGI:83232 NCBI chr10:127,001,025...127,008,209
Ensembl chr10:127,001,094...127,008,199 		JBrowse link
G St6galnac1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 acts_upstream_of_or_within TAS (PMID:10788794) MGI PMID:10788794 NCBI chr11:116,655,851...116,666,333
Ensembl chr11:116,655,851...116,666,333 		JBrowse link
G St6galnac3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:152,903,911...153,430,804
Ensembl chr 3:152,903,903...153,430,811 		JBrowse link
G St6galnac4 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:32,477,100...32,489,710
Ensembl chr 2:32,477,107...32,489,710 		JBrowse link
G St6galnac5 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:152,525,522...152,687,847
Ensembl chr 3:152,522,718...152,687,883 		JBrowse link
G St6galnac6 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in
acts_upstream_of_or_within		 IBA
IDA		 (PMID:10702226) GO_Central
MGI		 PMID:10702226 GO_REF:0000033 NCBI chr 2:32,489,721...32,510,821
Ensembl chr 2:32,489,721...32,510,818 		JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:73,588,867...73,663,408
Ensembl chr 7:73,588,867...73,663,438 		JBrowse link
G St8sia3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in IDA
ISO		 (MGI:74245|PMID:7782326) UniProt
MGI		 PMID:7782326 GO_REF:0000119 MGI:4834177 MGI:74245 NCBI chr18:64,387,430...64,409,217
Ensembl chr18:64,387,430...64,412,682 		JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:95,515,407...95,595,473
Ensembl chr 1:95,515,407...95,595,296 		JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IDA (MGI:2182536|PMID:11980897) BHF-UCL PMID:11980897 MGI:2182536 NCBI chr 2:13,659,745...13,798,659
Ensembl chr 2:13,655,832...13,798,875 		JBrowse link
ganglioside biosynthetic process via lactosylceramide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 6430550D23Rik RIKEN cDNA 6430550D23 gene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:155,831,465...155,850,315
Ensembl chr 2:155,815,199...155,849,897 		JBrowse link
G B4galt5 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 involved_in IMP (MGI:6196231|PMID:30114188) UniProt PMID:30114188 MGI:6196231 NCBI chr 2:167,140,364...167,191,155
Ensembl chr 2:167,140,364...167,191,103 		JBrowse link
G B4galt6 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 involved_in IMP (MGI:6196231|PMID:30114188) UniProt PMID:30114188 MGI:6196231 NCBI chr18:20,817,656...20,879,461
Ensembl chr18:20,817,656...20,879,461 		JBrowse link
G St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 involved_in IDA
ISO
IBA		 (MGI:65558|PMID:8144500) UniProt
MGI
GO_Central		 PMID:8144500 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:65558 NCBI chr15:66,974,724...67,048,575
Ensembl chr15:66,974,724...67,048,679 		JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in IDA
IBA
IMP
ISO		 (MGI:65558|PMID:8144500)
(MGI:6467685|PMID:22735313)		 UniProt
GO_Central
MGI		 PMID:8144500 PMID:22735313 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 MGI:6467685 MGI:65558 NCBI chr 8:111,646,520...111,699,132
Ensembl chr 8:111,646,554...111,699,112 		JBrowse link
G St3gal3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 involved_in IMP (MGI:6467685|PMID:22735313) UniProt PMID:22735313 MGI:6467685 NCBI chr 4:117,789,349...117,992,169
Ensembl chr 4:117,789,351...117,992,111 		JBrowse link
globoside biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A4galt alpha 1,4-galactosyltransferase acts_upstream_of_or_within IMP
IDA		 (PMID:16476743)
(PMID:22875802)		 MGI PMID:16476743 PMID:22875802 NCBI chr15:83,110,923...83,135,930
Ensembl chr15:83,110,923...83,135,975 		JBrowse link
globoside biosynthetic process via lactosylceramide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:111,646,520...111,699,132
Ensembl chr 8:111,646,554...111,699,112 		JBrowse link
glucosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fa2h fatty acid 2-hydroxylase involved_in IMP (MGI:5285470|PMID:21628453) UniProt PMID:21628453 MGI:5285470 NCBI chr 8:112,071,770...112,120,453
Ensembl chr 8:112,071,767...112,120,456 		JBrowse link
G Ugcg UDP-glucose ceramide glucosyltransferase involved_in IMP
IBA
ISO		 (MGI:2180222|PMID:10430909), (MGI:3603060|PMID:16109770), (MGI:5448789|PMID:22851168), (MGI:5510915|PMID:23748427) UniProt
GO_Central
MGI		 PMID:10430909 PMID:16109770 PMID:22851168 PMID:23748427 GO_REF:0000033 GO_REF:0000119 MGI:2180222 MGI:3603060 MGI:4834177 MGI:5448789 MGI:5510915 NCBI chr 4:59,189,452...59,222,833
Ensembl chr 4:59,189,257...59,222,833 		JBrowse link
lactosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt4 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr16:38,562,600...38,589,416
Ensembl chr16:38,562,626...38,589,411 		JBrowse link
G B4galt6 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr18:20,817,656...20,879,461
Ensembl chr18:20,817,656...20,879,461 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      organic substance metabolic process 10573
        carbohydrate derivative metabolic process 1101
          carbohydrate derivative biosynthetic process 640
            glycolipid biosynthetic process 68
              glycosphingolipid biosynthetic process 31
                GSI anchor biosynthetic process + 0
                ganglioside biosynthetic process + 17
                globoside biosynthetic process + 2
                glycosylceramide biosynthetic process + 7
                isogloboside biosynthetic process 0
                lactosylceramide biosynthetic process 2
                mannosyl-inositol phosphorylceramide biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      primary metabolic process 9512
        lipid metabolic process 1503
          cellular lipid metabolic process 1100
            membrane lipid metabolic process 204
              sphingolipid metabolic process 152
                sphingolipid biosynthetic process 100
                  glycosphingolipid biosynthetic process 31
                    GSI anchor biosynthetic process + 0
                    ganglioside biosynthetic process + 17
                    globoside biosynthetic process + 2
                    glycosylceramide biosynthetic process + 7
                    isogloboside biosynthetic process 0
                    lactosylceramide biosynthetic process 2
                    mannosyl-inositol phosphorylceramide biosynthetic process 0
paths to the root