ONTOLOGY REPORT - ANNOTATIONS |
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Term: | glycosphingolipid metabolic process |
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Accession: | GO:0006687
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browse the term
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Definition: | The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide. |
Synonyms: | exact_synonym: | glycosphingolipid metabolism |
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ABCA2 |
ATP binding cassette subfamily A member 2 |
involved_in |
ISO |
(MGI:3718765|PMID:17488728) |
UniProt |
PMID:17488728 |
MGI:3718765 |
NCBI chr 9:48,610,906...48,630,932
Ensembl chr 9:48,613,996...48,629,857
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B4GALNT1 |
beta-1,4-N-acetyl-galactosaminyltransferase 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3797995|PMID:18308723) |
MGI Ensembl |
PMID:18308723 |
GO_REF:0000107 MGI:3797995 |
NCBI chr10:1,703,846...1,756,837
Ensembl chr10:1,703,169...1,709,994
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BAX |
BCL2 associated X, apoptosis regulator |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3797995|PMID:18308723) |
MGI Ensembl |
PMID:18308723 |
GO_REF:0000107 MGI:3797995 |
NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
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CREM |
cAMP responsive element modulator |
acts_upstream_of_or_within |
ISO |
(MGI:3797995|PMID:18308723) |
MGI |
PMID:18308723 |
MGI:3797995 |
NCBI chr 2:1,755,189...1,828,746
Ensembl chr 2:1,755,522...1,828,910
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HEXB |
hexosaminidase subunit beta |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:78473|PMID:8789434) |
MGI Ensembl |
PMID:8789434 |
GO_REF:0000107 MGI:78473 |
NCBI chr 2:57,221,809...57,248,432
Ensembl chr 2:57,222,186...57,248,417
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KIT |
KIT proto-oncogene, receptor tyrosine kinase |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3797995|PMID:18308723) |
MGI Ensembl |
PMID:18308723 |
GO_REF:0000107 MGI:3797995 |
NCBI chr13:47,108,442...47,190,935
Ensembl chr13:47,108,504...47,190,029
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MAP7 |
microtubule associated protein 7 |
acts_upstream_of_or_within |
ISO |
(MGI:3797995|PMID:18308723) |
MGI |
PMID:18308723 |
MGI:3797995 |
NCBI chr 1:28,933,422...29,101,944
Ensembl chr 1:28,934,761...29,101,896
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ST6GALNAC3 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 6:70,060,406...70,583,974
Ensembl chr 6:70,062,555...70,574,865
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ST6GALNAC6 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 9:55,520,083...55,533,205
Ensembl chr 9:55,520,109...55,532,055
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B3GALT1 |
beta-1,3-galactosyltransferase 1 |
involved_in |
ISO |
(PMID:9582303) |
BHF-UCL |
PMID:9582303 |
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NCBI chr36:12,263,162...12,766,525
Ensembl chr36:12,761,821...12,762,801
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B3GALT2 |
beta-1,3-galactosyltransferase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr38:5,868,822...5,876,539
Ensembl chr38:5,874,011...5,875,279
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B4GALT3 |
beta-1,4-galactosyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr38:21,301,835...21,306,854
Ensembl chr38:21,302,003...21,312,958
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FA2H |
fatty acid 2-hydroxylase |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 5:75,878,539...75,923,886
Ensembl chr 5:75,878,243...75,948,094
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GAL3ST1 |
galactose-3-O-sulfotransferase 1 |
acts_upstream_of_or_within involved_in |
ISO IBA |
(MGI:1355015|PMID:10727929) (PMID:21873635) |
MGI GO_Central |
PMID:10727929 PMID:21873635 |
MGI:1355015 |
NCBI chr26:23,634,884...23,654,205
Ensembl chr26:23,637,844...23,646,219
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UGT8 |
UDP glycosyltransferase 8 |
involved_in |
ISO |
PMID:8713090 |
UniProt |
PMID:8713090 |
RGD:39458006 |
NCBI chr32:34,148,874...34,250,891
Ensembl chr32:34,179,247...34,233,116
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GALC |
galactosylceramidase |
acts_upstream_of_or_within involved_in |
ISO IEA IBA ISS |
(MGI:2183819|PMID:11371512) (PMID:21873635) |
MGI Ensembl GO_Central UniProt InterPro |
PMID:11371512 PMID:21873635 |
GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 MGI:2183819 |
NCBI chr 8:59,266,693...59,324,825
Ensembl chr 8:59,267,818...59,324,967
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GBA3 |
glucosylceramidase beta 3 |
involved_in |
ISO |
(PMID:17595169) |
UniProt |
PMID:17595169 |
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NCBI chr 3:87,080,351...87,190,931
Ensembl chr 3:87,081,134...87,190,987
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PSAP |
prosaposin |
acts_upstream_of_or_within |
ISO |
(MGI:2183819|PMID:11371512) |
MGI |
PMID:11371512 |
MGI:2183819 |
NCBI chr 4:22,571,095...22,603,880
Ensembl chr 4:22,572,153...22,603,848
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GAL3ST1 |
galactose-3-O-sulfotransferase 1 |
involved_in |
ISO |
(MGI:6436415|PMID:9030544) |
UniProt |
PMID:9030544 |
MGI:6436415 |
NCBI chr26:23,634,884...23,654,205
Ensembl chr26:23,637,844...23,646,219
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B3GALT4 |
beta-1,3-galactosyltransferase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr12:2,719,112...2,720,997
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B4GALNT1 |
beta-1,4-N-acetyl-galactosaminyltransferase 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:1331265|PMID:10021458) |
MGI Ensembl |
PMID:10021458 |
GO_REF:0000107 MGI:1331265 |
NCBI chr10:1,703,846...1,756,837
Ensembl chr10:1,703,169...1,709,994
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ST6GALNAC6 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:1354410|PMID:10702226) |
MGI Ensembl |
PMID:10702226 |
GO_REF:0000107 MGI:1354410 |
NCBI chr 9:55,520,083...55,533,205
Ensembl chr 9:55,520,109...55,532,055
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ST8SIA2 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 3:47,588,804...47,654,853
Ensembl chr 3:47,588,797...47,655,593
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ST8SIA3 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:18,541,197...18,557,887
Ensembl chr 1:18,549,942...18,557,893
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ST8SIA4 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 3:9,708,130...9,801,547
Ensembl chr 3:9,708,173...9,845,015
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ST8SIA6 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 2:19,392,690...19,618,127
Ensembl chr 2:19,482,468...19,616,339
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B4GALT5 |
beta-1,4-galactosyltransferase 5 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr24:36,220,973...36,241,482
Ensembl chr24:36,221,189...36,300,804
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B4GALT6 |
beta-1,4-galactosyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 7:57,849,872...57,917,289
Ensembl chr 7:57,849,884...57,914,360
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ST3GAL1 |
ST3 beta-galactoside alpha-2,3-sialyltransferase 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr13:29,853,182...29,949,004
Ensembl chr13:29,846,834...29,872,918
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ST3GAL2 |
ST3 beta-galactoside alpha-2,3-sialyltransferase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 5:76,377,782...76,427,998
Ensembl chr 5:76,379,702...76,394,525
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ST3GAL3 |
ST3 beta-galactoside alpha-2,3-sialyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr15:16,324,752...16,434,256
Ensembl chr15:16,324,899...16,401,616
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GM2A |
ganglioside GM2 activator |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:894862|PMID:9223328) |
MGI InterPro Ensembl |
PMID:9223328 |
GO_REF:0000002 GO_REF:0000107 MGI:894862 |
NCBI chr 4:58,002,438...58,016,003
Ensembl chr 4:58,003,946...58,015,753
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HEXA |
hexosaminidase subunit alpha |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:1271008|PMID:9645704), (MGI:78473|PMID:8789434) (MGI:69059|PMID:7937929), (MGI:894862|PMID:9223328) |
MGI Ensembl |
PMID:7937929 PMID:8789434 PMID:9223328 PMID:9645704 |
GO_REF:0000107 MGI:1271008 MGI:69059 MGI:78473 MGI:894862 |
NCBI chr30:35,836,788...35,862,525
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HEXB |
hexosaminidase subunit beta |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:1331265|PMID:10021458), (MGI:2670850|PMID:12756243), (MGI:3041658|PMID:12657883), (MGI:3573807|PMID:15748167), (MGI:894862|PMID:9223328) (MGI:1271008|PMID:9645704), (MGI:78473|PMID:8789434) (MGI:76816|PMID:8566348) |
MGI Ensembl |
PMID:8566348 PMID:8789434 PMID:9223328 PMID:9645704 PMID:10021458 PMID:12657883 PMID:12756243 PMID:15748167 More...
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GO_REF:0000107 MGI:1271008 MGI:1331265 MGI:2670850 MGI:3041658 MGI:3573807 MGI:76816 MGI:78473 MGI:894862 |
NCBI chr 2:57,221,809...57,248,432
Ensembl chr 2:57,222,186...57,248,417
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NEU2 |
neuraminidase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr25:44,563,664...44,596,837
Ensembl chr25:44,563,411...44,595,653
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NEU3 |
neuraminidase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr21:23,456,424...23,484,872
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NEU4 |
neuraminidase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr25:51,594,865...51,602,500
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ABCA2 |
ATP binding cassette subfamily A member 2 |
involved_in |
ISO |
(MGI:3718765|PMID:17488728) |
UniProt |
PMID:17488728 |
MGI:3718765 |
NCBI chr 9:48,610,906...48,630,932
Ensembl chr 9:48,613,996...48,629,857
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CLN6 |
CLN6 transmembrane ER protein |
involved_in |
ISS IEA |
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UniProt Ensembl |
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GO_REF:0000024 GO_REF:0000107 |
NCBI chr30:32,246,394...32,264,251
Ensembl chr30:32,246,411...32,264,240
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GM2A |
ganglioside GM2 activator |
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ISO |
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RGD |
PMID:9770472 |
RGD:1598995 |
NCBI chr 4:58,002,438...58,016,003
Ensembl chr 4:58,003,946...58,015,753
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ITGB8 |
integrin subunit beta 8 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3607039|PMID:16251442) |
MGI Ensembl |
PMID:16251442 |
GO_REF:0000107 MGI:3607039 |
NCBI chr14:34,370,957...34,449,091
Ensembl chr14:34,349,232...34,444,235
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NAGLU |
N-acetyl-alpha-glucosaminidase |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:4950812|PMID:21408219) |
MGI Ensembl |
PMID:21408219 |
GO_REF:0000107 MGI:4950812 |
NCBI chr 9:20,407,296...20,414,094
Ensembl chr 9:20,407,281...20,414,056
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A4GALT |
alpha 1,4-galactosyltransferase |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:5445364|PMID:22875802) (MGI:3623723|PMID:16476743) |
MGI Ensembl |
PMID:16476743 PMID:22875802 |
GO_REF:0000107 MGI:3623723 MGI:5445364 |
NCBI chr10:22,752,657...22,776,858
Ensembl chr10:22,774,834...22,776,069
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ST3GAL2 |
ST3 beta-galactoside alpha-2,3-sialyltransferase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 5:76,377,782...76,427,998
Ensembl chr 5:76,379,702...76,394,525
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GBGT1 |
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 |
involved_in |
IDA |
(PMID:8855242) |
UniProt |
PMID:8855242 |
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NCBI chr 9:51,274,811...51,284,131
Ensembl chr 9:51,274,686...51,284,122
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FA2H |
fatty acid 2-hydroxylase |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 5:75,878,539...75,923,886
Ensembl chr 5:75,878,243...75,948,094
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UGCG |
UDP-glucose ceramide glucosyltransferase |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr11:66,439,346...66,472,897
Ensembl chr11:66,439,346...66,472,897
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GBA1 |
glucosylceramidase beta 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 7:42,317,704...42,322,285
Ensembl chr 7:42,317,862...42,322,864
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GBA2 |
glucosylceramidase beta 2 |
involved_in |
IEA |
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InterPro Ensembl |
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GO_REF:0000002 GO_REF:0000107 |
NCBI chr11:52,264,959...52,277,298
Ensembl chr11:52,265,070...52,277,213
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GBA3 |
glucosylceramidase beta 3 |
involved_in NOT|involved_in |
ISO |
(PMID:26724485) (PMID:20728381) (PMID:17595169) |
UniProt |
PMID:17595169 PMID:20728381 PMID:26724485 |
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NCBI chr 3:87,080,351...87,190,931
Ensembl chr 3:87,081,134...87,190,987
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GBA1 |
glucosylceramidase beta 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3762988|PMID:17954912), (MGI:3795074|PMID:18346921) |
MGI Ensembl |
PMID:17954912 PMID:18346921 |
GO_REF:0000107 MGI:3762988 MGI:3795074 |
NCBI chr 7:42,317,704...42,322,285
Ensembl chr 7:42,317,862...42,322,864
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PSAP |
prosaposin |
acts_upstream_of_or_within |
ISO |
(MGI:3711591|PMID:17353235) |
MGI |
PMID:17353235 |
MGI:3711591 |
NCBI chr 4:22,571,095...22,603,880
Ensembl chr 4:22,572,153...22,603,848
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A3GALT2 |
alpha 1,3-galactosyltransferase 2 |
acts_upstream_of_or_within involved_in |
ISO IEA |
PMID:10854427 (MGI:5445364|PMID:22875802) |
RGD MGI Ensembl |
PMID:10854427 PMID:22875802 |
GO_REF:0000107 MGI:5445364 RGD:1299594 |
NCBI chr 2:68,117,648...68,138,610
Ensembl chr 2:68,118,413...68,138,095
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B4GALNT1 |
beta-1,4-N-acetyl-galactosaminyltransferase 1 |
involved_in |
ISO |
PMID:1606358 |
UniProt |
PMID:1606358 |
RGD:21201272 |
NCBI chr10:1,703,846...1,756,837
Ensembl chr10:1,703,169...1,709,994
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B4GALT6 |
beta-1,4-galactosyltransferase 6 |
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ISO |
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RGD |
PMID:9593693 |
RGD:70807 |
NCBI chr 7:57,849,872...57,917,289
Ensembl chr 7:57,849,884...57,914,360
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FUT4 |
fucosyltransferase 4 |
involved_in |
ISO |
(PMID:29593094) |
UniProt |
PMID:29593094 |
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NCBI chr21:6,386,665...6,390,109
Ensembl chr21:6,389,021...6,390,793
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FUT5 |
fucosyltransferase 5 (alpha (1,3) fucosyltransferase) |
involved_in |
ISO |
(PMID:29593094) |
UniProt |
PMID:29593094 |
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NCBI chr20:54,216,560...54,238,103
Ensembl chr20:54,224,789...54,225,841
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FUT9 |
fucosyltransferase 9 |
involved_in |
IEA ISS |
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Ensembl UniProt |
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GO_REF:0000024 GO_REF:0000107 |
NCBI chr12:54,581,280...54,784,072
Ensembl chr12:54,771,426...54,772,505
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ST6GALNAC5 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 |
involved_in |
ISO |
(MGI:1346847|PMID:10521438) |
BHF-UCL |
PMID:10521438 |
MGI:1346847 |
NCBI chr 6:69,706,717...69,867,760
Ensembl chr 6:69,709,114...69,867,648
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ST8SIA5 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 |
involved_in |
ISO |
PMID:1606358 |
UniProt |
PMID:1606358 |
RGD:21201272 |
NCBI chr 7:44,583,638...44,656,823
Ensembl chr 7:44,591,092...44,646,048
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TM9SF2 |
transmembrane 9 superfamily member 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr22:49,515,350...49,578,519
Ensembl chr22:49,515,382...49,577,905
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GLA |
galactosidase alpha |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr X:75,311,536...75,320,391
Ensembl chr X:75,311,536...75,320,249
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GLA |
galactosidase alpha |
acts_upstream_of_or_within |
ISO |
(MGI:1859538|PMID:10841515), (MGI:2155538|PMID:11752062), (MGI:86774|PMID:9122231) (MGI:1860035|PMID:10840053), (MGI:3525994|PMID:15629890) |
MGI |
PMID:9122231 PMID:10840053 PMID:10841515 PMID:11752062 PMID:15629890 |
MGI:1859538 MGI:1860035 MGI:2155538 MGI:3525994 MGI:86774 |
NCBI chr X:75,311,536...75,320,391
Ensembl chr X:75,311,536...75,320,249
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LCT |
lactase |
involved_in |
ISO |
PMID:4752949 |
UniProt |
PMID:4752949 |
RGD:151356630 |
NCBI chr19:38,571,539...38,620,567
Ensembl chr19:38,572,058...38,620,567
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ST6GALNAC3 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 6:70,060,406...70,583,974
Ensembl chr 6:70,062,555...70,574,865
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G |
ST6GALNAC6 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 9:55,520,083...55,533,205
Ensembl chr 9:55,520,109...55,532,055
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G |
B4GALT4 |
beta-1,4-galactosyltransferase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr33:22,903,842...22,920,955
Ensembl chr33:22,904,149...22,920,956
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G |
B4GALT6 |
beta-1,4-galactosyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 7:57,849,872...57,917,289
Ensembl chr 7:57,849,884...57,914,360
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G |
PRKCD |
protein kinase C delta |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr20:36,723,491...36,751,982
Ensembl chr20:36,723,809...36,752,191
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Term paths to the root
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