ONTOLOGY REPORT - ANNOTATIONS |
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Term: | glycosphingolipid metabolic process |
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Accession: | GO:0006687
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browse the term
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Definition: | The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide. |
Synonyms: | exact_synonym: | glycosphingolipid metabolism |
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ABCA2 |
ATP binding cassette subfamily A member 2 |
involved_in |
ISO |
(MGI:3718765|PMID:17488728) |
UniProt |
PMID:17488728 |
MGI:3718765 |
NCBI chr 9:108,067,633...108,089,742
Ensembl chr 9:137,036,696...137,057,776
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B4GALNT1 |
beta-1,4-N-acetyl-galactosaminyltransferase 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3797995|PMID:18308723) |
MGI Ensembl |
PMID:18308723 |
GO_REF:0000107 MGI:3797995 |
NCBI chr12:31,293,531...31,303,341
Ensembl chr12:31,553,671...31,562,988
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BAX |
BCL2 associated X, apoptosis regulator |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3797995|PMID:18308723) |
MGI Ensembl |
PMID:18308723 |
GO_REF:0000107 MGI:3797995 |
NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468
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CREM |
cAMP responsive element modulator |
acts_upstream_of_or_within |
ISO |
(MGI:3797995|PMID:18308723) |
MGI |
PMID:18308723 |
MGI:3797995 |
NCBI chr10:35,247,426...35,335,545
Ensembl chr10:35,825,218...35,912,432
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HEXB |
hexosaminidase subunit beta |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:78473|PMID:8789434) |
MGI Ensembl |
PMID:8789434 |
GO_REF:0000107 MGI:78473 |
NCBI chr 5:40,589,448...40,625,176
Ensembl chr 5:41,199,681...41,232,693
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KIT |
KIT proto-oncogene, receptor tyrosine kinase |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3797995|PMID:18308723) |
MGI Ensembl |
PMID:18308723 |
GO_REF:0000107 MGI:3797995 |
NCBI chr 4:69,199,543...69,282,323
Ensembl chr 4:75,761,946...75,844,473
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MAP7 |
microtubule associated protein 7 |
acts_upstream_of_or_within |
ISO |
(MGI:3797995|PMID:18308723) |
MGI |
PMID:18308723 |
MGI:3797995 |
NCBI chr 6:134,102,927...134,312,296
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ST6GALNAC3 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:75,290,496...75,851,683
Ensembl chr 1:77,377,482...77,930,220
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ST6GALNAC6 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 |
involved_in |
ISO |
(PMID:17123352) |
BHF-UCL |
PMID:17123352 |
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NCBI chr 9:99,005,336...99,025,296
Ensembl chr 9:127,677,841...127,697,880
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B3GALT1 |
beta-1,3-galactosyltransferase 1 |
involved_in |
ISO |
(PMID:9582303) |
BHF-UCL |
PMID:9582303 |
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NCBI chr2B:54,550,248...55,124,358
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B3GALT2 |
beta-1,3-galactosyltransferase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:168,638,291...168,645,893
Ensembl chr 1:172,928,889...172,934,683
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B4GALT3 |
beta-1,4-galactosyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:136,583,783...136,590,416
Ensembl chr 1:140,496,597...140,503,214
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FA2H |
fatty acid 2-hydroxylase |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr16:55,278,769...55,340,332
Ensembl chr16:74,632,179...74,693,710
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GAL3ST1 |
galactose-3-O-sulfotransferase 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:1355015|PMID:10727929) |
MGI Ensembl |
PMID:10727929 |
GO_REF:0000107 MGI:1355015 |
NCBI chr22:11,582,915...11,602,936
Ensembl chr22:29,382,779...29,393,042
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UGT8 |
UDP glycosyltransferase 8 |
involved_in |
ISO |
PMID:8713090 |
UniProt |
PMID:8713090 |
RGD:39458006 |
NCBI chr 4:107,113,476...107,199,272
Ensembl chr 4:117,676,810...117,762,729
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GALC |
galactosylceramidase |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:2183819|PMID:11371512) |
MGI Ensembl InterPro |
PMID:11371512 |
GO_REF:0000002 GO_REF:0000107 MGI:2183819 |
NCBI chr14:68,545,070...68,605,730
Ensembl chr14:87,905,098...87,965,770
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PSAP |
prosaposin |
acts_upstream_of_or_within |
ISO |
(MGI:2183819|PMID:11371512) |
MGI |
PMID:11371512 |
MGI:2183819 |
NCBI chr10:68,286,359...68,321,349
Ensembl chr10:70,810,881...70,828,781
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GAL3ST1 |
galactose-3-O-sulfotransferase 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr22:11,582,915...11,602,936
Ensembl chr22:29,382,779...29,393,042
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B3GALT4 |
beta-1,3-galactosyltransferase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 6:32,849,358...32,857,140
Ensembl chr 6:33,962,718...33,964,976
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B4GALNT1 |
beta-1,4-N-acetyl-galactosaminyltransferase 1 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:1331265|PMID:10021458) |
MGI Ensembl |
PMID:10021458 |
GO_REF:0000107 MGI:1331265 |
NCBI chr12:31,293,531...31,303,341
Ensembl chr12:31,553,671...31,562,988
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ST6GALNAC6 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:1354410|PMID:10702226) |
MGI Ensembl |
PMID:10702226 |
GO_REF:0000107 MGI:1354410 |
NCBI chr 9:99,005,336...99,025,296
Ensembl chr 9:127,677,841...127,697,880
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ST8SIA2 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr15:71,082,491...71,158,038
Ensembl chr15:90,279,509...90,354,173
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ST8SIA3 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr18:50,741,928...50,760,032
Ensembl chr18:54,077,167...54,086,638
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ST8SIA4 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 5:96,125,853...96,225,309
Ensembl chr 5:101,795,939...101,891,029
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ST8SIA6 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr10:17,632,154...17,771,252
Ensembl chr10:17,909,556...18,041,946
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B4GALT5 |
beta-1,4-galactosyltransferase 5 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr20:45,977,801...46,058,429
Ensembl chr20:47,041,469...47,123,214
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B4GALT6 |
beta-1,4-galactosyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr18:24,840,106...24,906,309
Ensembl chr18:28,438,302...28,500,946
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ST3GAL1 |
ST3 beta-galactoside alpha-2,3-sialyltransferase 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 8:130,111,085...130,227,195
Ensembl chr 8:133,084,835...133,119,791
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ST3GAL2 |
ST3 beta-galactoside alpha-2,3-sialyltransferase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr16:54,577,578...54,637,626
Ensembl chr16:70,218,748...70,240,162
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ST3GAL3 |
ST3 beta-galactoside alpha-2,3-sialyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:43,006,963...43,232,968
Ensembl chr 1:44,409,904...44,603,658
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GM2A |
ganglioside GM2 activator |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:894862|PMID:9223328) |
MGI Ensembl InterPro |
PMID:9223328 |
GO_REF:0000002 GO_REF:0000107 MGI:894862 |
NCBI chr 5:146,680,277...146,696,505
Ensembl chr 5:152,680,696...152,697,018
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HEXB |
hexosaminidase subunit beta |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:76816|PMID:8566348) (MGI:1271008|PMID:9645704), (MGI:78473|PMID:8789434) (MGI:1331265|PMID:10021458), (MGI:2670850|PMID:12756243), (MGI:3041658|PMID:12657883), (MGI:3573807|PMID:15748167), (MGI:894862|PMID:9223328) |
MGI Ensembl |
PMID:8566348 PMID:8789434 PMID:9223328 PMID:9645704 PMID:10021458 PMID:12657883 PMID:12756243 PMID:15748167 More...
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GO_REF:0000107 MGI:1271008 MGI:1331265 MGI:2670850 MGI:3041658 MGI:3573807 MGI:76816 MGI:78473 MGI:894862 |
NCBI chr 5:40,589,448...40,625,176
Ensembl chr 5:41,199,681...41,232,693
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LOC100986229 |
CUGBP Elav-like family member 6 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:1271008|PMID:9645704), (MGI:78473|PMID:8789434) (MGI:69059|PMID:7937929), (MGI:894862|PMID:9223328) |
MGI Ensembl |
PMID:7937929 PMID:8789434 PMID:9223328 PMID:9645704 |
GO_REF:0000107 MGI:1271008 MGI:69059 MGI:78473 MGI:894862 |
NCBI chr15:51,235,123...51,326,832
Ensembl chr15:70,057,943...70,090,688 Ensembl chr15:70,057,943...70,090,688
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LOC117975273 |
sialidase-4-like |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr12:130,914,893...130,923,565
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NEU2 |
neuraminidase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr2B:120,260,420...120,262,930
Ensembl chr2B:239,174,532...239,176,917
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NEU3 |
neuraminidase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr11:70,047,878...70,070,303
Ensembl chr11:73,353,332...73,373,270
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NEU4 |
neuraminidase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr12:130,824,179...130,833,287
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ABCA2 |
ATP binding cassette subfamily A member 2 |
involved_in |
ISO |
(MGI:3718765|PMID:17488728) |
UniProt |
PMID:17488728 |
MGI:3718765 |
NCBI chr 9:108,067,633...108,089,742
Ensembl chr 9:137,036,696...137,057,776
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CLN6 |
CLN6 transmembrane ER protein |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr15:47,156,583...47,215,805
Ensembl chr15:65,425,472...65,985,242
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GM2A |
ganglioside GM2 activator |
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ISO |
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RGD |
PMID:9770472 |
RGD:1598995 |
NCBI chr 5:146,680,277...146,696,505
Ensembl chr 5:152,680,696...152,697,018
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ITGB8 |
integrin subunit beta 8 |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3607039|PMID:16251442) |
MGI Ensembl |
PMID:16251442 |
GO_REF:0000107 MGI:3607039 |
NCBI chr 7:21,019,917...21,105,143
Ensembl chr 7:20,336,031...20,415,666
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NAGLU |
N-acetyl-alpha-glucosaminidase |
involved_in acts_upstream_of_or_within |
IEA ISO |
(MGI:4950812|PMID:21408219) |
Ensembl MGI |
PMID:21408219 |
GO_REF:0000107 MGI:4950812 |
NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242
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A4GALT |
alpha 1,4-galactosyltransferase (P blood group) |
acts_upstream_of_or_within involved_in |
ISO IEA |
(MGI:3623723|PMID:16476743) (MGI:5445364|PMID:22875802) |
MGI Ensembl |
PMID:16476743 PMID:22875802 |
GO_REF:0000107 MGI:3623723 MGI:5445364 |
NCBI chr22:23,587,378...23,615,467
Ensembl chr22:41,739,062...41,740,123
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ST3GAL2 |
ST3 beta-galactoside alpha-2,3-sialyltransferase 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr16:54,577,578...54,637,626
Ensembl chr16:70,218,748...70,240,162
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GBGT1 |
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) |
involved_in |
ISO |
(PMID:8855242) |
UniProt |
PMID:8855242 |
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NCBI chr 9:104,273,080...104,284,268
Ensembl chr 9:132,889,064...132,897,832
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FA2H |
fatty acid 2-hydroxylase |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr16:55,278,769...55,340,332
Ensembl chr16:74,632,179...74,693,710
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UGCG |
UDP-glucose ceramide glucosyltransferase |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 9:83,024,602...83,065,017
Ensembl chr 9:111,184,478...111,222,613
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GBA1 |
glucosylceramidase beta 1 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:130,579,300...130,589,560
Ensembl chr 1:134,185,385...134,194,851
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GBA2 |
glucosylceramidase beta 2 |
involved_in |
IEA |
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InterPro Ensembl |
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GO_REF:0000002 GO_REF:0000107 |
NCBI chr 9:35,587,876...35,599,971
Ensembl chr 9:36,390,409...36,402,949
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GBA1 |
glucosylceramidase beta 1 |
acts_upstream_of_or_within |
ISO |
(MGI:3762988|PMID:17954912), (MGI:3795074|PMID:18346921) |
MGI |
PMID:17954912 PMID:18346921 |
MGI:3762988 MGI:3795074 |
NCBI chr 1:130,579,300...130,589,560
Ensembl chr 1:134,185,385...134,194,851
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PSAP |
prosaposin |
acts_upstream_of_or_within |
ISO |
(MGI:3711591|PMID:17353235) |
MGI |
PMID:17353235 |
MGI:3711591 |
NCBI chr10:68,286,359...68,321,349
Ensembl chr10:70,810,881...70,828,781
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A3GALT2 |
alpha 1,3-galactosyltransferase 2 |
acts_upstream_of_or_within involved_in |
ISO |
(MGI:5445364|PMID:22875802) PMID:10854427 PMID:12626403 |
RGD MGI UniProt |
PMID:10854427 PMID:12626403 PMID:22875802 |
MGI:5445364 RGD:1299594 RGD:632674 |
NCBI chr 1:32,592,614...32,598,986
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B4GALNT1 |
beta-1,4-N-acetyl-galactosaminyltransferase 1 |
involved_in |
ISO |
PMID:1606358 |
UniProt |
PMID:1606358 |
RGD:21201272 |
NCBI chr12:31,293,531...31,303,341
Ensembl chr12:31,553,671...31,562,988
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B4GALT6 |
beta-1,4-galactosyltransferase 6 |
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ISO |
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RGD |
PMID:9593693 |
RGD:70807 |
NCBI chr18:24,840,106...24,906,309
Ensembl chr18:28,438,302...28,500,946
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FUT4 |
fucosyltransferase 4 |
involved_in |
ISO |
(PMID:29593094) |
UniProt |
PMID:29593094 |
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NCBI chr11:89,550,637...89,566,111
Ensembl chr11:93,036,119...93,037,711
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FUT6 |
fucosyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr19:4,846,423...4,857,328
Ensembl chr19:5,779,200...5,780,389
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FUT9 |
fucosyltransferase 9 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 6:93,857,269...94,048,555
Ensembl chr 6:97,932,631...97,933,710
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ST6GALNAC5 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 |
involved_in |
ISO |
(MGI:1346847|PMID:10521438) |
BHF-UCL |
PMID:10521438 |
MGI:1346847 |
NCBI chr 1:76,080,706...76,284,836
Ensembl chr 1:78,167,280...78,366,180
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ST8SIA5 |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 |
involved_in |
ISO |
PMID:1606358 |
UniProt |
PMID:1606358 |
RGD:21201272 |
NCBI chr18:39,958,239...40,036,282
Ensembl chr18:43,492,025...43,569,857
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TM9SF2 |
transmembrane 9 superfamily member 2 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr13:80,669,277...80,731,340
Ensembl chr13:99,807,555...99,869,456
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GLA |
galactosidase alpha |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr X:90,600,412...90,610,594
Ensembl chr X:100,732,311...100,742,280
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GLA |
galactosidase alpha |
acts_upstream_of_or_within |
ISO |
(MGI:1860035|PMID:10840053), (MGI:3525994|PMID:15629890) (MGI:1859538|PMID:10841515), (MGI:2155538|PMID:11752062), (MGI:86774|PMID:9122231) |
MGI |
PMID:9122231 PMID:10840053 PMID:10841515 PMID:11752062 PMID:15629890 |
MGI:1859538 MGI:1860035 MGI:2155538 MGI:3525994 MGI:86774 |
NCBI chr X:90,600,412...90,610,594
Ensembl chr X:100,732,311...100,742,280
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LCT |
lactase |
involved_in |
ISO |
PMID:4752949 |
UniProt |
PMID:4752949 |
RGD:151356630 |
NCBI chr2B:24,025,383...24,079,779
Ensembl chr2B:139,855,605...139,908,764
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ST6GALNAC3 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 1:75,290,496...75,851,683
Ensembl chr 1:77,377,482...77,930,220
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ST6GALNAC6 |
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 |
involved_in |
ISO |
(PMID:17123352) |
BHF-UCL |
PMID:17123352 |
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NCBI chr 9:99,005,336...99,025,296
Ensembl chr 9:127,677,841...127,697,880
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B4GALT4 |
beta-1,4-galactosyltransferase 4 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 3:116,329,595...116,358,779
Ensembl chr 3:123,241,676...123,270,806
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B4GALT6 |
beta-1,4-galactosyltransferase 6 |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr18:24,840,106...24,906,309
Ensembl chr18:28,438,302...28,500,946
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G |
PRKCD |
protein kinase C delta |
involved_in |
IEA |
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Ensembl |
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GO_REF:0000107 |
NCBI chr 3:53,104,137...53,135,588
Ensembl chr 3:54,330,328...54,357,910
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Term paths to the root
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