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ONTOLOGY REPORT - ANNOTATIONS


Term:glycosylceramide metabolic process
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Accession:GO:0006677 term browser browse the term
Definition:The chemical reactions and pathways involving glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group.
Synonyms:exact_synonym: glycosylceramide metabolism



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glycosylceramide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G St6galnac3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in ISO
IEA
(PMID:17123352)
GO_REF:0000107
RGD
Ensembl
PMID:17123352 GO_REF:0000107 NCBI chr 2:242,129,755...242,645,120
Ensembl chr 2:242,129,763...242,645,133
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in ISO (PMID:17123352) RGD PMID:17123352 NCBI chr 3:15,894,275...15,907,502
Ensembl chr 3:15,885,968...15,907,496
JBrowse link
galactosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galt1 Beta-1,3-galactosyltransferase 1 involved_in ISO (PMID:9582303) RGD PMID:9582303 NCBI chr 3:52,253,413...52,826,508
Ensembl chr 3:52,253,618...52,825,313
JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 involved_in ISO (PMID:9582303) RGD PMID:9582303 NCBI chr13:55,389,406...55,398,419
Ensembl chr13:55,389,406...55,398,419
JBrowse link
G B4galt3 beta-1,4-galactosyltransferase 3 involved_in ISO
IBA
IEA
(PMID:9405390)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:9405390 GO_REF:0000033 GO_REF:0000107 NCBI chr13:83,691,378...83,697,448
Ensembl chr13:83,691,446...83,697,448
JBrowse link
G Fa2h fatty acid 2-hydroxylase involved_in ISS
ISO
IMP
IEA
GO_REF:0000024
(MGI:3696647|PMID:15658937), (MGI:3826747|PMID:18815260)
PMID:17901466
GO_REF:0000041
UniProt
RGD
PMID:15658937 PMID:18815260 PMID:17901466 GO_REF:0000024 GO_REF:0000041 MGI:3696647 MGI:3826747, RGD:13825191 NCBI chr19:39,312,904...39,364,153
Ensembl chr19:39,312,906...39,364,153
JBrowse link
G Gal3st1 galactose-3-O-sulfotransferase 1 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:1355015|PMID:10727929)
GO_REF:0000033
RGD
GO_Central
PMID:10727929 GO_REF:0000033 MGI:1355015 NCBI chr14:78,868,049...78,886,402
Ensembl chr14:78,870,793...78,886,388
JBrowse link
G Ugt8 UDP glycosyltransferase 8 involved_in IDA
IBA
IEA
PMID:8713090
GO_REF:0000033
GO_REF:0000041
GO_Central
UniProt
PMID:8713090 GO_REF:0000033 GO_REF:0000041, RGD:39458006 NCBI chr 2:214,264,483...214,332,769
Ensembl chr 2:214,264,483...214,332,660
JBrowse link
galactosylceramide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Galc galactosylceramidase involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:8399327)
GO_REF:0000033
(MGI:78941|PMID:8769874)
MGI:1856218 (MGI:2183819|PMID:11371512)
RGD
GO_Central
PMID:8399327 PMID:8769874 PMID:11371512 GO_REF:0000033 MGI:2183819 MGI:78941 NCBI chr 6:117,452,888...117,522,281
Ensembl chr 6:117,452,895...117,515,830
JBrowse link
G Gba3 glucosylceramidase beta 3 involved_in ISO (PMID:17595169) RGD PMID:17595169 NCBI chr14:60,574,974...60,721,411
Ensembl chr14:60,574,976...60,721,653
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO MGI:2183897 (MGI:2183819|PMID:11371512) RGD PMID:11371512 MGI:2183819 NCBI chr20:28,214,229...28,240,501
Ensembl chr20:28,214,271...28,240,498
JBrowse link
galactosylceramide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gal3st1 galactose-3-O-sulfotransferase 1 involved_in ISO (MGI:6436415|PMID:9030544) RGD PMID:9030544 MGI:6436415 NCBI chr14:78,868,049...78,886,402
Ensembl chr14:78,870,793...78,886,388
JBrowse link
glucosylceramide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fa2h fatty acid 2-hydroxylase involved_in ISS
ISO
GO_REF:0000024
(MGI:5285470|PMID:21628453)
UniProt
RGD
PMID:21628453 GO_REF:0000024 MGI:5285470 NCBI chr19:39,312,904...39,364,153
Ensembl chr19:39,312,906...39,364,153
JBrowse link
G Ugcg UDP-glucose ceramide glucosyltransferase involved_in ISO
IBA
ISS
(PMID:8643456)
GO_REF:0000033
(MGI:2180222|PMID:10430909), (MGI:3603060|PMID:16109770), (MGI:5448789|PMID:22851168), (MGI:5510915|PMID:23748427)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:8643456 PMID:10430909 PMID:16109770 PMID:22851168 PMID:23748427 GO_REF:0000024 GO_REF:0000033 MGI:2180222 MGI:3603060 MGI:5448789 MGI:5510915 NCBI chr 5:74,032,978...74,065,701
Ensembl chr 5:74,032,978...74,065,393
JBrowse link
glucosylceramide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba1 glucosylceramidase beta 1 involved_in ISO
IBA
(MGI:5141165|PMID:21700325), (MGI:5501380|PMID:23707074), (MGI:6271235|PMID:24211208)
GO_REF:0000033
(PMID:16293621), (PMID:19279011), (PMID:21700325), (PMID:24022302), (PMID:24211208), (PMID:25584808), (PMID:9201993)
RGD
GO_Central
PMID:9201993 PMID:16293621 PMID:19279011 PMID:21700325 PMID:23707074 More... GO_REF:0000033 MGI:5141165 MGI:5501380 MGI:6271235 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Gba2 glucosylceramidase beta 2 involved_in ISO
IEA
ISS
(PMID:17080196), (PMID:30308956)
GO_REF:0000107
(MGI:3690511|PMID:17080196), (MGI:5484792|PMID:23250757)
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17080196 PMID:23250757 PMID:30308956 GO_REF:0000024 GO_REF:0000107 MGI:3690511 MGI:5484792 NCBI chr 5:57,822,389...57,834,522
Ensembl chr 5:57,822,389...57,834,072
JBrowse link
G Gba3 glucosylceramidase beta 3 involved_in
NOT|involved_in
ISO (PMID:17595169), (PMID:26724485)
(PMID:20728381)
RGD PMID:17595169 PMID:20728381 PMID:26724485 NCBI chr14:60,574,974...60,721,411
Ensembl chr14:60,574,976...60,721,653
JBrowse link
glucosylceramide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (MGI:3762988|PMID:17954912), (MGI:3795074|PMID:18346921) RGD PMID:17954912 PMID:18346921 MGI:3762988 MGI:3795074 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO (MGI:3711591|PMID:17353235) RGD PMID:17353235 MGI:3711591 NCBI chr20:28,214,229...28,240,501
Ensembl chr20:28,214,271...28,240,498
JBrowse link
glycosylceramide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba3 glucosylceramidase beta 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:60,574,974...60,721,411
Ensembl chr14:60,574,976...60,721,653
JBrowse link
G Gla galactosidase, alpha acts_upstream_of_or_within ISO MGI:1861794 (MGI:1859538|PMID:10841515), (MGI:1860035|PMID:10840053), (MGI:2155538|PMID:11752062), (MGI:3525994|PMID:15629890), (MGI:86774|PMID:9122231) RGD PMID:9122231 PMID:10840053 PMID:10841515 PMID:11752062 PMID:15629890 MGI:1859538 MGI:1860035 MGI:2155538 MGI:3525994 MGI:86774 NCBI chr  X:97,769,227...97,780,646
Ensembl chr  X:97,768,996...97,780,664
JBrowse link
G Lct lactase involved_in IDA PMID:4752949 UniProt PMID:4752949 RGD:151356630 NCBI chr13:39,781,929...39,824,456
Ensembl chr13:39,781,929...39,824,456
JBrowse link
positive regulation of glucosylceramide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkcd protein kinase C, delta involved_in ISO
IEA
(PMID:19279011)
GO_REF:0000107
RGD
Ensembl
PMID:19279011 GO_REF:0000107 NCBI chr16:5,769,217...5,799,380
Ensembl chr16:5,769,215...5,799,352
JBrowse link
regulation of glucosylceramide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir127 microRNA 127 acts_upstream_of ISO UniProtKB:P04062 (PMID:25584808) RGD PMID:25584808 NCBI chr 6:128,546,215...128,546,311
Ensembl chr 6:128,546,215...128,546,311
JBrowse link
G Mir16 microRNA 16 acts_upstream_of_or_within ISO UniProtKB:P04062 (PMID:25584808) RGD PMID:25584808 NCBI chr 2:153,245,349...153,245,443
Ensembl chr 2:153,245,349...153,245,443
JBrowse link
G Mir195 microRNA 195 acts_upstream_of_or_within ISO UniProtKB:P04062 (PMID:25584808) RGD PMID:25584808 NCBI chr10:54,951,838...54,951,924
Ensembl chr10:54,951,838...54,951,924
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20350
    metabolic process 11904
      nitrogen compound metabolic process 9700
        amide metabolic process 1657
          ceramide metabolic process 111
            glycosylceramide metabolic process 20
              galactosylceramide metabolic process + 9
              glucosylceramide metabolic process + 10
              glycosylceramide biosynthetic process + 7
              glycosylceramide catabolic process + 11
Path 2
Term Annotations click to browse term
  biological_process 20350
    metabolic process 11904
      primary metabolic process 10287
        lipid metabolic process 1487
          cellular lipid metabolic process 1103
            membrane lipid metabolic process 211
              glycolipid metabolic process 106
                glycosphingolipid metabolic process 59
                  glycosylceramide metabolic process 20
                    galactosylceramide metabolic process + 9
                    glucosylceramide metabolic process + 10
                    glycosylceramide biosynthetic process + 7
                    glycosylceramide catabolic process + 11
paths to the root