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ONTOLOGY REPORT - ANNOTATIONS
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Term:
sphinganine metabolic process
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Accession:
GO:0006667
browse the term
Definition:
The chemical reactions and pathways involving sphinganine, D-erythro-2-amino-1,3-octadecanediol.
Synonyms:
exact_synonym:
dihydrosphingosine metabolic process; dihydrosphingosine metabolism; sphinganine metabolism
show annotations for term's descendants Sort by:
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reference
evidence
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Rat (3)
Mouse (3)
Human (3)
Chinchilla (3)
Bonobo (3)
Dog (3)
Squirrel (3)
Pig (3)
Green Monkey (3)
Naked Mole-rat (3)
All
Genes (3)
sphinganine metabolic process
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Degs2
delta(4)-desaturase, sphingolipid 2
acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3694278|PMID:16571104)
SGD:S000002705 (MGI:3505861|PMID:11937514)
GO_REF:0000033
RGD
GO_Central
PMID:11937514
PMID:16571104
GO_REF:0000033
MGI:3505861
MGI:3694278
NCBI chr 6:127,596,063...127,613,293
Ensembl chr 6:127,596,071...127,613,293
sphinganine biosynthetic process
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
Sptlc1
serine palmitoyltransferase, long chain base subunit 1
acts_upstream_of_or_within
ISO
MGI:3815115 (MGI:3846467|PMID:19416652)
RGD
PMID:19416652
MGI:3846467
NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
G
Sptlc2
serine palmitoyltransferase, long chain base subunit 2
acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1098386|PMID:9363775)
GO_REF:0000107
RGD
Ensembl
PMID:9363775
GO_REF:0000107
MGI:1098386
NCBI chr 6:106,948,682...107,031,532
Ensembl chr 6:106,950,949...107,031,542
Term paths to the root
one shortest
all shortest
one longest
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one shortest and longest
all
Path 1
Term
Annotations
biological_process
20325
metabolic process
11737
nitrogen compound metabolic process
9693
organonitrogen compound metabolic process
5810
sphingolipid metabolic process
158
sphingoid metabolic process
24
sphinganine metabolic process
3
sphinganine biosynthetic process
2
Path 2
Term
Annotations
biological_process
20325
metabolic process
11737
organic substance metabolic process
11231
lipid metabolic process
1484
cellular lipid metabolic process
1100
membrane lipid metabolic process
211
sphingolipid metabolic process
158
sphingoid metabolic process
24
sphinganine metabolic process
3
sphinganine biosynthetic process
2