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ONTOLOGY REPORT - ANNOTATIONS

Term:protein targeting to vacuole
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Accession:GO:0006623 term browser browse the term
Definition:The process of directing proteins towards the vacuole, usually using signals contained within the protein.
Synonyms:exact_synonym: protein vacuolar targeting;   protein-vacuole targeting;   vacuolar protein sorting


show annotations for term's descendants           Sort by:
protein targeting to vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643 		JBrowse link
G Mon1a MON1 homolog A, secretory trafficking associated involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:108,574,272...108,593,163
Ensembl chr 8:108,574,388...108,593,156 		JBrowse link
G Mon1b MON1 homolog B, secretory trafficking associated involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr19:41,617,201...41,625,347
Ensembl chr19:41,617,364...41,625,347 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:106,267,908...106,316,585
Ensembl chr 8:106,267,954...106,316,584 		JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:213,901,999...214,128,638
Ensembl chr 1:213,901,999...214,128,555 		JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:68,478,366...68,651,893
Ensembl chr 8:68,478,395...68,651,895 		JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:156,830,509...157,055,895
Ensembl chr 5:156,830,512...157,055,891 		JBrowse link
G Vps37a VPS37A subunit of ESCRT-I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:51,736,170...51,775,384
Ensembl chr16:51,737,481...51,775,390 		JBrowse link
G Vps37b VPS37B subunit of ESCRT-I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:32,560,047...32,589,015
Ensembl chr12:32,560,047...32,589,014 		JBrowse link
G Vps37c VPS37C subunit of ESCRT-I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:207,336,694...207,362,295
Ensembl chr 1:207,336,731...207,362,289 		JBrowse link
G Vps37d VPS37D subunit of ESCRT-I involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:21,609,210...21,614,669
Ensembl chr12:21,609,182...21,614,659 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:46,063,124...46,227,582
Ensembl chr17:46,063,124...46,227,791 		JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in ISO MGI:1857091 (MGI:6161933|PMID:23708095) RGD PMID:23708095 MGI:6161933 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857 		JBrowse link
G Vps8 VPS8 subunit of CORVET complex involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:79,402,236...79,634,234
Ensembl chr11:79,402,239...79,634,133 		JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in IBA
ISO		 PMID:21873635
(PMID:19938078), (PMID:25505245)		 RGD PMID:19938078 PMID:25505245 PMID:21873635 RGD:13792537 NCBI chr 7:22,800,502...22,866,336
Ensembl chr 7:22,800,485...22,866,933 		JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO MGI:1856989 (MGI:2679144|PMID:14557411) RGD PMID:14557411 MGI:2679144 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:11139587) RGD PMID:11139587 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026 		JBrowse link
G Gcc2 GRIP and coiled-coil domain containing 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16885419)		 UniProt
RGD		 PMID:16885419 GO_REF:0000024 NCBI chr20:26,247,394...26,293,613
Ensembl chr20:26,247,404...26,293,613 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in ISO UniProtKB:P46934 (PMID:17116753) RGD PMID:17116753 NCBI chr10:100,825,426...100,844,462
Ensembl chr10:100,825,426...100,844,462 		JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate involved_in ISO
IEA		 (PMID:18767904)
GO_REF:0000107		 RGD
Ensembl		 PMID:18767904 GO_REF:0000107 NCBI chr10:105,739,617...105,757,838
Ensembl chr10:105,739,296...105,757,835 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:3803048|PMID:18619870) RGD PMID:18619870 MGI:3803048 NCBI chr 5:143,087,759...143,109,807
Ensembl chr 5:143,087,759...143,109,807 		JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor IMP chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chr 6:5,661,871...5,728,109
Ensembl chr 6:5,661,871...5,724,521 		JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:155,501,080...155,510,219
Ensembl chr 4:155,500,921...155,510,216 		JBrowse link
G M6pr-ps1 mannose-6-phosphate receptor, cation dependent, pseudogene 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:82,129,292...82,130,780
Ensembl chr  X:82,129,322...82,130,158 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 acts_upstream_of_or_within ISO (PMID:25327288) RGD PMID:25327288 NCBI chr16:7,389,222...7,409,564
Ensembl chr16:7,366,542...7,409,641
Ensembl chr16:7,366,542...7,409,641 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (MGI:5921629|PMID:28675177) RGD PMID:28675177 MGI:5921629 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO UniProtKB:Q9NZ52 (PMID:17116753) RGD PMID:17116753 NCBI chr 8:73,384,095...73,468,951
Ensembl chr 8:73,383,695...73,468,951 		JBrowse link
G Pxk PX domain containing serine/threonine kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:16,759,857...16,828,452
Ensembl chr15:16,759,862...16,828,444 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Scarb2 scavenger receptor class B, member 2 involved_in ISO
IBA		 (MGI:3773765|PMID:18022370)
(PMID:18022370)
PMID:21873635		 RGD PMID:18022370 PMID:21873635 MGI:3773765, RGD:13792537 NCBI chr14:15,558,271...15,609,813
Ensembl chr14:15,558,236...15,609,813 		JBrowse link
G Snx16 sorting nexin 16 involved_in IBA
IEA
ISO
ISS		 PMID:21873635
GO_REF:0000107
(PMID:12813048)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:12813048 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:91,335,896...91,357,622
Ensembl chr 2:91,336,092...91,357,619 		JBrowse link
G Sorl1 sortilin related receptor 1 involved_in ISO
IBA		 (PMID:24523320)
PMID:21873635		 RGD PMID:24523320 PMID:21873635 RGD:13792537 NCBI chr 8:42,341,704...42,504,435
Ensembl chr 8:42,341,704...42,504,513 		JBrowse link
G Sort1 sortilin 1 acts_upstream_of_or_within ISO MGI:4397584 (MGI:4368056|PMID:19732768) RGD PMID:19732768 MGI:4368056 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO
IEA		 (PMID:16973552)
GO_REF:0000107		 RGD
Ensembl		 PMID:16973552 GO_REF:0000107 NCBI chr19:34,934,999...34,948,267
Ensembl chr19:34,934,961...34,948,887 		JBrowse link
G Vps53 VPS53 subunit of GARP complex involved_in ISO (MGI:6103674|PMID:28658628) RGD PMID:28658628 MGI:6103674 NCBI chr10:60,919,820...61,038,674
Ensembl chr10:60,919,820...61,038,676 		JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in ISO
IEA		 MGI:1857091 (MGI:6103674|PMID:28658628), (MGI:6430941|PMID:32345721)
GO_REF:0000107		 RGD
Ensembl		 PMID:28658628 PMID:32345721 GO_REF:0000107 MGI:6103674 MGI:6430941 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857 		JBrowse link
G Zfyve16 zinc finger FYVE-type containing 16 involved_in IBA
ISO		 PMID:21873635
(PMID:11546807)		 RGD PMID:11546807 PMID:21873635 RGD:13792537 NCBI chr 2:23,713,018...23,757,576
Ensembl chr 2:23,713,766...23,756,990 		JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin involved_in IEA
ISO		 GO_REF:0000107
(PMID:9228033)		 Ensembl
RGD		 PMID:9228033 GO_REF:0000107 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315 		JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:164,044,226...164,046,344
Ensembl chr 2:164,044,261...164,046,336 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in ISO
ISS
IBA		 (PMID:11559757), (PMID:26212789), (PMID:36586411)
GO_REF:0000024
PMID:21873635		 RGD
UniProt		 PMID:11559757 PMID:26212789 PMID:36586411 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 acts_upstream_of_or_within
involved_in		 IMP
IGI
ISO
ISS
IBA		 PMID:18644871
(PMID:27628032)
GO_REF:0000024
(MGI:5805578|PMID:27628032)
PMID:21873635		 RGD
UniProt		 PMID:27628032 PMID:18644871 PMID:18644871 PMID:21873635 GO_REF:0000024 MGI:5805578, RGD:10412301, RGD:10412301, RGD:13792537 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522 		JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgm immunity-related GTPase M involved_in ISO (PMID:29420192) RGD PMID:29420192 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:27498865), (PMID:30612879), (PMID:32715615), (PMID:36221902)		 UniProt
RGD		 PMID:27498865 PMID:30612879 PMID:32715615 PMID:36221902 GO_REF:0000024 NCBI chr10:34,525,517...34,536,685
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vamp7 vesicle-associated membrane protein 7 acts_upstream_of_or_within ISO (MGI:3774712|PMID:18227281) RGD PMID:18227281 MGI:3774712 NCBI chr12:16,728,477...16,764,261
Ensembl chr12:16,728,524...16,764,097 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19746
    localization 5598
      cellular localization 3610
        intracellular transport 1636
          vacuolar transport 165
            protein targeting to vacuole 44
              cytoplasm to vacuole transport by the Cvt pathway + 0
              cytoplasm to vacuole transport by the NVT pathway 0
              protein targeting to lysosome + 27
              protein targeting to vacuolar membrane + 1
              protein targeting to vacuole involved in autophagy + 7
Path 2
Term Annotations click to browse term
  biological_process 19746
    cellular process 18159
      cellular localization 3610
        cellular macromolecule localization 2621
          protein localization 2612
            establishment of protein localization 1737
              protein transport 1612
                intracellular protein transport 916
                  protein targeting 343
                    protein targeting to vacuole 44
                      cytoplasm to vacuole transport by the Cvt pathway + 0
                      cytoplasm to vacuole transport by the NVT pathway 0
                      protein targeting to lysosome + 27
                      protein targeting to vacuolar membrane + 1
                      protein targeting to vacuole involved in autophagy + 7
paths to the root