Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:polyamine biosynthetic process
go back to main search page
Accession:GO:0006596 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups.
Synonyms:exact_synonym: polyamine anabolism;   polyamine biosynthesis;   polyamine formation;   polyamine synthesis
 xref: MetaCyc:POLYAMSYN-PWY


show annotations for term's descendants           Sort by:
 
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN2 antizyme inhibitor 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:89,346,860...89,385,323
Ensembl chr 6:89,345,862...89,385,319
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:76,293,142...76,296,626
Ensembl chr 2:76,293,147...76,296,659
JBrowse link
G ODC1 ornithine decarboxylase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:19,908,037...19,910,553
Ensembl chr  X:19,907,900...19,910,895
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT|involved_in ISS UniProt GO_REF:0000024 NCBI chr12:52,911,725...52,913,314
Ensembl chr12:52,911,723...52,913,363
JBrowse link
G SRM spermidine synthase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,244,143...71,253,508
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase involved_in ISO (PMID:16354669) UniProt PMID:16354669 NCBI chr14:141,360,509...141,369,642 JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:1415709 PMID:10430362 RGD:1578320 RGD:7242912 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
G PAOX polyamine oxidase involved_in ISO (PMID:16354669) UniProt PMID:16354669 NCBI chr14:141,360,509...141,369,642 JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:74,773,359...74,784,486
Ensembl chr 6:74,773,324...74,784,468
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:34,221,368...34,257,261
Ensembl chr 4:34,209,008...34,257,136
JBrowse link
G AZIN2 antizyme inhibitor 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:89,346,860...89,385,323
Ensembl chr 6:89,345,862...89,385,319
JBrowse link
G LOC100520618 ornithine decarboxylase-like involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:88,047,044...88,061,905 JBrowse link
G ODC1 ornithine decarboxylase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link
regulation of polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NNMT nicotinamide N-methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:41,871,072...41,882,415
Ensembl chr 9:41,870,980...41,882,760
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:3584197|PMID:11856372)
GO_Central
MGI
RGD
InterPro
PMID:1415709 PMID:10430362 PMID:10712236 PMID:11856372 PMID:21873635 GO_REF:0000002 MGI:3584197 RGD:1578320 RGD:7242911 RGD:7242912 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G SRM spermidine synthase involved_in IBA
ISO
(PMID:21873635) GO_Central
RGD
PMID:8494549 PMID:12843627 PMID:16931179 PMID:21873635 RGD:1359042 RGD:7242920 RGD:7242928 NCBI chr 6:71,246,895...71,253,534
Ensembl chr 6:71,244,143...71,253,508
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:3584197|PMID:11856372)
GO_Central
MGI
RGD
InterPro
PMID:1415709 PMID:10430362 PMID:10712236 PMID:11856372 PMID:21873635 GO_REF:0000002 MGI:3584197 RGD:1578320 RGD:7242911 RGD:7242912 NCBI chr 1:76,839,448...76,863,745
Ensembl chr 1:76,839,731...76,863,738
JBrowse link
G SMS spermine synthase involved_in IEA
ISO
InterPro
RGD
PMID:8494549 GO_REF:0000002 RGD:7242928 NCBI chr  X:18,118,332...18,169,396
Ensembl chr  X:18,118,468...18,169,396
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16579
    metabolic process 10421
      nitrogen compound metabolic process 8789
        organonitrogen compound metabolic process 5939
          amine metabolic process 119
            amine biosynthetic process 41
              cellular biogenic amine biosynthetic process 41
                polyamine biosynthetic process 13
                  nor-spermidine biosynthetic process 0
                  putrescine biosynthetic process + 6
                  regulation of polyamine biosynthetic process + 2
                  spermidine biosynthetic process + 3
                  spermine biosynthetic process 2
                  thermospermine biosynthetic process 0
                  trimethylenediamine biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 16579
    metabolic process 10421
      nitrogen compound metabolic process 8789
        organonitrogen compound metabolic process 5939
          amine metabolic process 119
            cellular amine metabolic process 113
              cellular biogenic amine metabolic process 100
                polyamine metabolic process 19
                  polyamine biosynthetic process 13
                    nor-spermidine biosynthetic process 0
                    putrescine biosynthetic process + 6
                    regulation of polyamine biosynthetic process + 2
                    spermidine biosynthetic process + 3
                    spermine biosynthetic process 2
                    thermospermine biosynthetic process 0
                    trimethylenediamine biosynthetic process 0
paths to the root