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ONTOLOGY REPORT - ANNOTATIONS


Term:polyamine biosynthetic process
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Accession:GO:0006596 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups.
Synonyms:exact_synonym: polyamine anabolism;   polyamine biosynthesis;   polyamine formation;   polyamine synthesis
 xref: MetaCyc:POLYAMSYN-PWY


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polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:102,826,302...102,864,200
Ensembl chr 8:102,826,111...102,893,864
JBrowse link
G AZIN2 antizyme inhibitor 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:33,081,152...33,162,288
Ensembl chr 1:33,081,104...33,123,492
JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr19:2,269,486...2,273,488
Ensembl chr19:2,269,509...2,273,490
JBrowse link
G OAZ2 ornithine decarboxylase antizyme 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr15:64,687,574...64,703,281
Ensembl chr15:64,687,573...64,703,281
JBrowse link
G OAZ3 ornithine decarboxylase antizyme 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:151,762,969...151,771,330
Ensembl chr 1:151,762,899...151,771,334
JBrowse link
G ODC1 ornithine decarboxylase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:10,439,968...10,448,327
Ensembl chr 2:10,439,968...10,448,327
JBrowse link
G SAT1 spermidine/spermine N1-acetyltransferase 1 involved_in IDA
TAS
(PMID:15283699) UniProt
Reactome
PMID:15283699 Reactome:R-HSA-351200 NCBI chr  X:23,783,173...23,786,210
Ensembl chr  X:23,783,173...23,786,210
JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT|involved_in IDA (PMID:15283699) UniProt PMID:15283699 NCBI chr17:7,626,234...7,627,878
Ensembl chr17:7,626,234...7,627,876
JBrowse link
G SMOX spermine oxidase involved_in TAS Reactome Reactome:R-HSA-351200 NCBI chr20:4,148,828...4,187,732
Ensembl chr20:4,120,980...4,187,747
JBrowse link
G SRM spermidine synthase involved_in IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 1:11,054,589...11,060,053
Ensembl chr 1:11,054,584...11,060,020
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase involved_in IDA (PMID:16354669) UniProt PMID:16354669 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,379,261...133,391,694
JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ODC1 ornithine decarboxylase 1 ISO RGD PMID:1415709 PMID:10430362 RGD:1578320 RGD:7242912 NCBI chr 2:10,439,968...10,448,327
Ensembl chr 2:10,439,968...10,448,327
JBrowse link
G PAOX polyamine oxidase involved_in IDA (PMID:16354669) UniProt PMID:16354669 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,379,261...133,391,694
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:15,571,699...15,585,051
Ensembl chr 1:15,571,699...15,585,051
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:102,826,302...102,864,200
Ensembl chr 8:102,826,111...102,893,864
JBrowse link
G AZIN2 antizyme inhibitor 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:33,081,152...33,162,288
Ensembl chr 1:33,081,104...33,123,492
JBrowse link
G ODC1 ornithine decarboxylase 1 involved_in ISS
IBA
IEA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 GO_REF:0000041 NCBI chr 2:10,439,968...10,448,327
Ensembl chr 2:10,439,968...10,448,327
JBrowse link
regulation of polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NNMT nicotinamide N-methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:114,257,806...114,313,536
Ensembl chr11:114,257,787...114,313,536
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGMAT agmatinase involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:15,571,699...15,585,051
Ensembl chr 1:15,571,699...15,585,051
JBrowse link
G AMD1 adenosylmethionine decarboxylase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(MGI:3584197|PMID:11856372)
(PMID:21873635)
InterPro
MGI
RGD
GO_Central
Ensembl
PMID:1415709 PMID:10430362 PMID:10712236 PMID:11856372 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:3584197 RGD:1578320 RGD:7242911 RGD:7242912 NCBI chr 6:110,814,617...110,895,713
Ensembl chr 6:110,874,770...110,898,879
JBrowse link
G SRM spermidine synthase involved_in IDA
ISO
IBA
IEA
(PMID:17585781)
(PMID:21873635)
UniProt
RGD
GO_Central
PMID:8494549 PMID:12843627 PMID:16931179 PMID:17585781 PMID:21873635 GO_REF:0000041 RGD:1359042 RGD:7242920 RGD:7242928 NCBI chr 1:11,054,589...11,060,053
Ensembl chr 1:11,054,584...11,060,020
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
(PMID:21873635)
(MGI:3584197|PMID:11856372)
GO_Central
MGI
RGD
InterPro
Ensembl
PMID:1415709 PMID:10430362 PMID:10712236 PMID:11856372 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:3584197 RGD:1578320 RGD:7242911 RGD:7242912 NCBI chr 6:110,814,617...110,895,713
Ensembl chr 6:110,874,770...110,898,879
JBrowse link
G SMS spermine synthase involved_in IBA
ISO
IEA
(PMID:21873635) GO_Central
RGD
InterPro
UniProt
PMID:8494549 PMID:21873635 GO_REF:0000002 GO_REF:0000041 RGD:7242928 NCBI chr  X:21,940,709...21,994,837
Ensembl chr  X:21,940,709...21,994,837
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18537
    metabolic process 11865
      nitrogen compound metabolic process 10013
        organonitrogen compound metabolic process 6609
          amine metabolic process 138
            amine biosynthetic process 47
              cellular biogenic amine biosynthetic process 46
                polyamine biosynthetic process 15
                  nor-spermidine biosynthetic process 0
                  putrescine biosynthetic process + 5
                  regulation of polyamine biosynthetic process + 2
                  spermidine biosynthetic process + 4
                  spermine biosynthetic process 2
                  thermospermine biosynthetic process 0
                  trimethylenediamine biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 18537
    metabolic process 11865
      nitrogen compound metabolic process 10013
        organonitrogen compound metabolic process 6609
          amine metabolic process 138
            cellular amine metabolic process 133
              cellular biogenic amine metabolic process 118
                polyamine metabolic process 19
                  polyamine biosynthetic process 15
                    nor-spermidine biosynthetic process 0
                    putrescine biosynthetic process + 5
                    regulation of polyamine biosynthetic process + 2
                    spermidine biosynthetic process + 4
                    spermine biosynthetic process 2
                    thermospermine biosynthetic process 0
                    trimethylenediamine biosynthetic process 0
paths to the root