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ONTOLOGY REPORT - ANNOTATIONS


Term:polyamine biosynthetic process
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Accession:GO:0006596 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups.
Synonyms:exact_synonym: polyamine anabolism;   polyamine biosynthesis;   polyamine formation;   polyamine synthesis
 xref: MetaCyc:POLYAMSYN-PWY



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polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:69,654,773...69,681,578
Ensembl chr 7:69,654,663...69,681,578
JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397
JBrowse link
G LOC120101528 spermidine synthase-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:18,709,548...18,710,782
Ensembl chr 3:18,709,584...18,710,588
JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:54,625,790...54,638,066
Ensembl chr 3:54,625,793...54,638,039
JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:8,883,855...8,886,315
Ensembl chr 7:8,883,851...8,886,310
JBrowse link
G Sat1 spermidine/spermine N1-acetyl transferase 1 involved_in ISO (PMID:15283699) RGD PMID:15283699 NCBI chr  X:40,158,354...40,161,641
Ensembl chr  X:40,157,046...40,196,813
JBrowse link
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 NOT|involved_in ISO (PMID:15283699) RGD PMID:15283699 NCBI chr10:54,340,756...54,343,507
Ensembl chr10:54,340,372...54,343,224
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase involved_in ISO (PMID:16354669) RGD PMID:16354669 NCBI chr 1:194,919,655...194,928,498
Ensembl chr 1:194,903,273...194,928,504
JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odc1 ornithine decarboxylase 1 IDA RGD PMID:10430362 PMID:1415709 RGD:1578320, RGD:7242912 NCBI chr 6:40,329,831...40,336,444
Ensembl chr 6:40,329,964...40,336,440
JBrowse link
G Paox polyamine oxidase involved_in ISO (PMID:16354669) RGD PMID:16354669 NCBI chr 1:194,919,655...194,928,498
Ensembl chr 1:194,903,273...194,928,504
JBrowse link
putrescine biosynthetic process from arginine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:154,043,665...154,074,278
Ensembl chr 5:154,060,151...154,074,276
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 7:69,654,773...69,681,578
Ensembl chr 7:69,654,663...69,681,578
JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397
JBrowse link
G Ldc1 leucine decarboxylase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:142,551,120...142,563,217
Ensembl chr 5:142,552,008...142,563,074
JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000041
(MGI:5574513|PMID:24967154)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:24967154 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 MGI:5574513 NCBI chr 6:40,329,831...40,336,444
Ensembl chr 6:40,329,964...40,336,440
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 involved_in IDA
IMP
IEA
IBA
GO_REF:0000043
GO_REF:0000033
UniProt
GO_Central
RGD
PMID:10430362 PMID:10712236 PMID:1415709 GO_REF:0000033 GO_REF:0000043, RGD:1578320, RGD:7242911, RGD:7242912 NCBI chr20:43,695,783...43,711,476
Ensembl chr20:43,697,237...43,711,476
JBrowse link
G Srm spermidine synthase involved_in IDA
IBA
ISO
IMP
GO_REF:0000033
(PMID:17585781)
GO_Central
RGD
PMID:17585781 PMID:12843627 PMID:8494549 PMID:16931179 GO_REF:0000033, RGD:1359042, RGD:7242928, RGD:7242920 NCBI chr 5:159,025,875...159,029,076
Ensembl chr 5:159,025,873...159,029,405
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 involved_in IDA
IBA
IEA
IMP
GO_REF:0000033
GO_REF:0000118
GO_REF:0000002
GO_Central
TreeGrafter
InterPro
RGD
PMID:10430362 PMID:1415709 PMID:10712236 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118, RGD:1578320, RGD:7242912, RGD:7242911 NCBI chr20:43,695,783...43,711,476
Ensembl chr20:43,697,237...43,711,476
JBrowse link
G Sms spermine synthase involved_in IMP
IBA
GO_REF:0000033 GO_Central
RGD
PMID:8494549 GO_REF:0000033, RGD:7242928 NCBI chr  X:37,516,949...37,572,657
Ensembl chr  X:37,516,931...37,570,822
JBrowse link
G Smsl1 spermine synthase like 1 involved_in IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr13:82,435,500...82,436,942
Ensembl chr13:82,435,520...82,437,158
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organonitrogen compound metabolic process 5843
          amine metabolic process 134
            biogenic amine metabolic process 110
              polyamine metabolic process 23
                polyamine biosynthetic process 16
                  nor-spermidine biosynthetic process 0
                  putrescine biosynthetic process + 7
                  regulation of polyamine biosynthetic process + 1
                  spermidine biosynthetic process + 3
                  spermine biosynthetic process 3
                  thermospermine biosynthetic process 0
                  trimethylenediamine biosynthetic process 0
paths to the root