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ONTOLOGY REPORT - ANNOTATIONS


Term:ornithine metabolic process
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Accession:GO:0006591 term browser browse the term
Definition:The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
Synonyms:exact_synonym: ornithine metabolism


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ornithine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN2 antizyme inhibitor 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:89,346,860...89,385,323
Ensembl chr 6:89,345,862...89,385,319
JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha IEA Ensembl GO_REF:0000107 NCBI chr17:46,783,772...46,847,505
Ensembl chr17:46,783,777...46,847,503
JBrowse link
G OTC ornithine carbamoyltransferase ISO RGD PMID:4062872 RGD:2300098 NCBI chr  X:34,322,398...34,391,711
Ensembl chr  X:34,322,298...34,391,837
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASL argininosuccinate lyase IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 3:16,637,481...16,646,869
Ensembl chr 3:16,637,481...16,646,869
JBrowse link
G OTC ornithine carbamoyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:34,322,398...34,391,711
Ensembl chr  X:34,322,298...34,391,837
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:32,006,035...32,028,983
Ensembl chr 1:32,006,038...32,028,986
JBrowse link
G ARG2 arginase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:91,343,987...91,385,911
Ensembl chr 7:91,343,987...91,385,911
JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 IEA Ensembl GO_REF:0000107 NCBI chr14:107,174,062...107,221,373
Ensembl chr14:107,170,689...107,221,215
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTC ornithine carbamoyltransferase IEA Ensembl GO_REF:0000107 NCBI chr  X:34,322,398...34,391,711
Ensembl chr  X:34,322,298...34,391,837
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:34,221,368...34,257,261
Ensembl chr 4:34,209,008...34,257,136
JBrowse link
G AZIN2 antizyme inhibitor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:89,346,860...89,385,323
Ensembl chr 6:89,345,862...89,385,319
JBrowse link
G LOC100520618 ornithine decarboxylase-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:88,047,044...88,061,905 JBrowse link
G ODC1 ornithine decarboxylase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 3:126,087,013...126,095,644
Ensembl chr 3:126,078,418...126,132,577
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10588
      primary metabolic process 9409
        cellular amino acid metabolic process 266
          alpha-amino acid metabolic process 193
            ornithine metabolic process 10
              D-ornithine metabolic process 0
              L-alanine biosynthetic process via ornithine 0
              arginine biosynthetic process via ornithine + 2
              arginine catabolic process to ornithine 2
              glutamate catabolic process to ornithine 0
              ornithine biosynthetic process 1
              ornithine catabolic process + 1
              putrescine biosynthetic process from ornithine 4
              regulation of ornithine metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10588
      cellular metabolic process 9576
        organic acid metabolic process 954
          oxoacid metabolic process 930
            carboxylic acid metabolic process 878
              cellular amino acid metabolic process 266
                alpha-amino acid metabolic process 193
                  ornithine metabolic process 10
                    D-ornithine metabolic process 0
                    L-alanine biosynthetic process via ornithine 0
                    arginine biosynthetic process via ornithine + 2
                    arginine catabolic process to ornithine 2
                    glutamate catabolic process to ornithine 0
                    ornithine biosynthetic process 1
                    ornithine catabolic process + 1
                    putrescine biosynthetic process from ornithine 4
                    regulation of ornithine metabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.