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ONTOLOGY REPORT - ANNOTATIONS


Term:ornithine metabolic process
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Accession:GO:0006591 term browser browse the term
Definition:The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
Synonyms:exact_synonym: ornithine metabolism


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ornithine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin2 antizyme inhibitor 2 IDA (MGI:MGI:3695330|PMID:16916800) MGI PMID:16916800 MGI:MGI:3695330 NCBI chr 4:128,930,233...128,962,456
Ensembl chr 4:128,930,233...128,962,442
JBrowse link
G Hnf4a hepatic nuclear factor 4, alpha ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:163,506,811...163,572,907
Ensembl chr 2:163,506,808...163,572,910
JBrowse link
G Otc ornithine transcarbamylase ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr  X:10,252,230...10,321,024
Ensembl chr  X:10,252,305...10,321,024
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 5:130,011,258...130,024,381
Ensembl chr 5:130,011,258...130,029,247
JBrowse link
G Otc ornithine transcarbamylase IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:10,252,230...10,321,024
Ensembl chr  X:10,252,305...10,321,024
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg1 arginase, liver ISO
IBA
(MGI:MGI:6201960|PMID:21873635) RGD
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:6201960 NCBI chr10:24,915,207...24,927,470
Ensembl chr10:24,915,221...24,927,484
JBrowse link
G Arg2 arginase type II ISO
IBA
(MGI:MGI:6201960|PMID:21873635) RGD
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:6201960 NCBI chr12:79,130,788...79,156,301
Ensembl chr12:79,130,777...79,156,301
JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr19:40,550,257...40,588,463
Ensembl chr19:40,550,257...40,588,463
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otc ornithine transcarbamylase ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:10,252,230...10,321,024
Ensembl chr  X:10,252,305...10,321,024
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:38,487,430...38,519,294
Ensembl chr15:38,487,427...38,519,266
JBrowse link
G Azin2 antizyme inhibitor 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 4:128,930,233...128,962,456
Ensembl chr 4:128,930,233...128,962,442
JBrowse link
G Ldc1 leucine decarboxylase 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 4:130,209,023...130,222,428
Ensembl chr 4:130,209,109...130,222,401
JBrowse link
G Odc1 ornithine decarboxylase, structural 1 IDA
IBA
(MGI:MGI:5574513|PMID:24967154)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:24967154 MGI:MGI:5574513, MGI:MGI:6201960 NCBI chr12:17,544,808...17,551,502
Ensembl chr12:17,544,794...17,551,505
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23392
    metabolic process 11300
      primary metabolic process 9928
        cellular amino acid metabolic process 255
          alpha-amino acid metabolic process 186
            ornithine metabolic process 10
              D-ornithine metabolic process 0
              L-alanine biosynthetic process via ornithine 0
              arginine biosynthetic process via ornithine + 2
              arginine catabolic process to ornithine 2
              glutamate catabolic process to ornithine 0
              ornithine biosynthetic process 1
              ornithine catabolic process + 1
              putrescine biosynthetic process from ornithine 4
              regulation of ornithine metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 23392
    metabolic process 11300
      cellular metabolic process 10092
        organic acid metabolic process 1039
          oxoacid metabolic process 1010
            carboxylic acid metabolic process 962
              cellular amino acid metabolic process 255
                alpha-amino acid metabolic process 186
                  ornithine metabolic process 10
                    D-ornithine metabolic process 0
                    L-alanine biosynthetic process via ornithine 0
                    arginine biosynthetic process via ornithine + 2
                    arginine catabolic process to ornithine 2
                    glutamate catabolic process to ornithine 0
                    ornithine biosynthetic process 1
                    ornithine catabolic process + 1
                    putrescine biosynthetic process from ornithine 4
                    regulation of ornithine metabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.