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ONTOLOGY REPORT - ANNOTATIONS


Term:ornithine metabolic process
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Accession:GO:0006591 term browser browse the term
Definition:The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
Synonyms:exact_synonym: ornithine metabolism


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ornithine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN2 antizyme inhibitor 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:68,288,554...68,323,710
Ensembl chr 2:68,286,195...68,323,710
JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha IEA Ensembl GO_REF:0000107 NCBI chr24:31,847,864...31,908,337
Ensembl chr24:31,847,961...31,905,916
JBrowse link
G OTC ornithine carbamoyltransferase ISO RGD PMID:4062872 RGD:2300098 NCBI chr  X:33,130,921...33,200,441
Ensembl chr  X:33,131,040...33,199,595
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASL argininosuccinate lyase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:768,522...779,144
Ensembl chr 6:730,358...779,424
JBrowse link
G GUSB glucuronidase beta IEA InterPro GO_REF:0000002 NCBI chr 6:730,345...743,916
Ensembl chr 6:730,358...779,424
JBrowse link
G OTC ornithine carbamoyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:33,130,921...33,200,441
Ensembl chr  X:33,131,040...33,199,595
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:242,717...255,736
Ensembl chr12:242,714...255,305
JBrowse link
G ARG2 arginase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:41,588,051...41,619,406
Ensembl chr 8:41,588,150...41,619,402
JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 IEA Ensembl GO_REF:0000107 NCBI chr28:9,101,578...9,148,063
Ensembl chr28:9,102,282...9,147,992
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTC ornithine carbamoyltransferase IEA Ensembl GO_REF:0000107 NCBI chr  X:33,130,921...33,200,441
Ensembl chr  X:33,131,040...33,199,595
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN1 antizyme inhibitor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:4,363,996...4,396,069
Ensembl chr13:4,361,340...4,396,040
JBrowse link
G AZIN2 antizyme inhibitor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:68,288,554...68,323,710
Ensembl chr 2:68,286,195...68,323,710
JBrowse link
G ODC1 ornithine decarboxylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:7,368,699...7,376,970
Ensembl chr17:7,369,232...7,376,975
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10657
      primary metabolic process 9488
        cellular amino acid metabolic process 265
          alpha-amino acid metabolic process 190
            ornithine metabolic process 10
              D-ornithine metabolic process 0
              L-alanine biosynthetic process via ornithine 0
              arginine biosynthetic process via ornithine + 3
              arginine catabolic process to ornithine 2
              glutamate catabolic process to ornithine 0
              ornithine biosynthetic process 1
              ornithine catabolic process + 1
              putrescine biosynthetic process from ornithine 3
              regulation of ornithine metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10657
      cellular metabolic process 9648
        organic acid metabolic process 950
          oxoacid metabolic process 927
            carboxylic acid metabolic process 877
              cellular amino acid metabolic process 265
                alpha-amino acid metabolic process 190
                  ornithine metabolic process 10
                    D-ornithine metabolic process 0
                    L-alanine biosynthetic process via ornithine 0
                    arginine biosynthetic process via ornithine + 3
                    arginine catabolic process to ornithine 2
                    glutamate catabolic process to ornithine 0
                    ornithine biosynthetic process 1
                    ornithine catabolic process + 1
                    putrescine biosynthetic process from ornithine 3
                    regulation of ornithine metabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.