Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:ornithine metabolic process
go back to main search page
Accession:GO:0006591 term browser browse the term
Definition:The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
Synonyms:exact_synonym: ornithine metabolism


GViewer not supported for chinchilla.
show annotations for term's descendants           Sort by:
 
ornithine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin2 antizyme inhibitor 2 ISO (MGI:MGI:3695330|PMID:16916800) MGI PMID:16916800 MGI:MGI:3695330 NCBI chrNW_004955452:11,304,345...11,330,370
Ensembl chrNW_004955452:11,303,499...11,330,555
JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha ISO (PMID:17827783) BHF-UCL PMID:17827783 NCBI chrNW_004955445:12,925,248...12,962,501
Ensembl chrNW_004955445:12,924,662...12,984,281
JBrowse link
G Otc ornithine carbamoyltransferase ISO RGD PMID:4062872 RGD:2300098 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg1 arginase 1 ISO RGD PMID:15753084 RGD:8693655 NCBI chrNW_004955436:12,235,767...12,247,817
Ensembl chrNW_004955436:12,235,767...12,251,972
JBrowse link
G Arg2 arginase 2 ISO RGD PMID:15753084 RGD:8693655 NCBI chrNW_004955466:2,549,557...2,577,060
Ensembl chrNW_004955466:2,549,557...2,577,060
JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 ISO (PMID:11092761), (PMID:26297558) UniProtKB PMID:11092761, PMID:26297558 NCBI chrNW_004955507:1,892,087...1,946,526
Ensembl chrNW_004955507:1,892,061...1,946,703
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otc ornithine carbamoyltransferase ISO (PMID:2556444), (PMID:8112735) BHF-UCL PMID:2556444, PMID:8112735 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odc1 ornithine decarboxylase 1 ISO (MGI:MGI:5574513|PMID:24967154) UniProtKB PMID:24967154 MGI:MGI:5574513 NCBI chrNW_004955487:5,603,722...5,608,386
Ensembl chrNW_004955487:5,603,722...5,608,386
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11889
    metabolic process 7609
      primary metabolic process 6753
        cellular amino acid metabolic process 185
          alpha-amino acid metabolic process 138
            ornithine metabolic process 7
              D-ornithine metabolic process 0
              L-alanine biosynthetic process via ornithine 0
              arginine biosynthetic process via ornithine + 0
              arginine catabolic process to ornithine 2
              glutamate catabolic process to ornithine 0
              ornithine biosynthetic process 1
              ornithine catabolic process + 1
              putrescine biosynthetic process from ornithine 1
              regulation of ornithine metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 11889
    metabolic process 7609
      cellular metabolic process 7027
        organic acid metabolic process 694
          oxoacid metabolic process 675
            carboxylic acid metabolic process 645
              cellular amino acid metabolic process 185
                alpha-amino acid metabolic process 138
                  ornithine metabolic process 7
                    D-ornithine metabolic process 0
                    L-alanine biosynthetic process via ornithine 0
                    arginine biosynthetic process via ornithine + 0
                    arginine catabolic process to ornithine 2
                    glutamate catabolic process to ornithine 0
                    ornithine biosynthetic process 1
                    ornithine catabolic process + 1
                    putrescine biosynthetic process from ornithine 1
                    regulation of ornithine metabolic process + 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.