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ONTOLOGY REPORT - ANNOTATIONS


Term:ornithine metabolic process
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Accession:GO:0006591 term browser browse the term
Definition:The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
Synonyms:exact_synonym: ornithine metabolism


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ornithine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN2 antizyme inhibitor 2 ISO (MGI:MGI:3695330|PMID:16916800) MGI PMID:16916800 MGI:MGI:3695330 NCBI chr 1:32,365,430...32,404,880
Ensembl chr 1:33,550,140...33,589,402
JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha ISO (PMID:17827783) BHF-UCL PMID:17827783 NCBI chr20:40,684,450...40,763,824
Ensembl chr20:41,779,034...41,856,536
JBrowse link
G OTC ornithine carbamoyltransferase ISO RGD PMID:4062872 RGD:2300098 NCBI chr  X:30,796,828...30,868,144
Ensembl chr  X:38,505,232...38,575,819
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 ISO RGD PMID:15753084 RGD:8693655 NCBI chr 6:129,372,747...129,383,880
Ensembl chr 6:133,479,966...133,491,162
JBrowse link
G ARG2 arginase 2 ISO RGD PMID:15753084 RGD:8693655 NCBI chr14:48,197,831...48,231,829
Ensembl chr14:67,075,941...67,109,962
JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 ISO (PMID:11092761), (PMID:26297558) UniProtKB PMID:11092761, PMID:26297558 NCBI chr10:92,216,639...92,267,525
Ensembl chr10:95,723,099...95,774,095
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTC ornithine carbamoyltransferase ISO (PMID:2556444), (PMID:8112735) BHF-UCL PMID:2556444, PMID:8112735 NCBI chr  X:30,796,828...30,868,144
Ensembl chr  X:38,505,232...38,575,819
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ODC1 ornithine decarboxylase 1 ISO (MGI:MGI:5574513|PMID:24967154) UniProtKB PMID:24967154 MGI:MGI:5574513 NCBI chr2A:10,443,308...10,451,412
Ensembl chr2A:10,598,125...10,607,152
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12561
    metabolic process 7977
      primary metabolic process 7054
        cellular amino acid metabolic process 189
          alpha-amino acid metabolic process 142
            ornithine metabolic process 7
              D-ornithine metabolic process 0
              L-alanine biosynthetic process via ornithine 0
              arginine biosynthetic process via ornithine + 0
              arginine catabolic process to ornithine 2
              glutamate catabolic process to ornithine 0
              ornithine biosynthetic process 1
              ornithine catabolic process + 1
              putrescine biosynthetic process from ornithine 1
              regulation of ornithine metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 12561
    metabolic process 7977
      cellular metabolic process 7333
        organic acid metabolic process 751
          oxoacid metabolic process 732
            carboxylic acid metabolic process 695
              cellular amino acid metabolic process 189
                alpha-amino acid metabolic process 142
                  ornithine metabolic process 7
                    D-ornithine metabolic process 0
                    L-alanine biosynthetic process via ornithine 0
                    arginine biosynthetic process via ornithine + 0
                    arginine catabolic process to ornithine 2
                    glutamate catabolic process to ornithine 0
                    ornithine biosynthetic process 1
                    ornithine catabolic process + 1
                    putrescine biosynthetic process from ornithine 1
                    regulation of ornithine metabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.