ONTOLOGY REPORT - ANNOTATIONS
Term: melanin metabolic process
Accession: GO:0006582
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Definition: The chemical reactions and pathways involving melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom.
Synonyms: exact_synonym: melanin metabolism
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Bcl2
BCL2, apoptosis regulator
acts_upstream_of_or_within involved_in
ISO IEA
MGI:2156165 (MGI:2154874|PMID:11709185) GO_REF:0000107
RGD Ensembl
PMID:11709185
GO_REF:0000107 MGI:2154874
NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Myo5a
myosin VA
acts_upstream_of_or_within
ISO
MGI:1856004 (MGI:1202196|PMID:9548375)
RGD
PMID:9548375
MGI:1202196
NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
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Tyrp1
tyrosinase-related protein 1
acts_upstream_of_or_within
ISO
MGI:1855960 (MGI:1202196|PMID:9548375)
RGD
PMID:9548375
MGI:1202196
NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
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Vhl
von Hippel-Lindau tumor suppressor
acts_upstream_of_or_within
ISO
MGI:2136645 (MGI:5429122|PMID:22627278)
RGD
PMID:22627278
MGI:5429122
NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
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Asip
agouti signaling protein
acts_upstream_of_or_within involved_in
ISO ISS IEA
MGI:1855937 (MGI:76308|PMID:7665913) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:7665913
GO_REF:0000024 GO_REF:0000107 MGI:76308
NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
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Cited1
Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:4412464|PMID:11434569)
UniProt RGD
PMID:11434569
GO_REF:0000024 MGI:4412464
NCBI chr X:67,350,376...67,355,072
Ensembl chr X:67,350,373...67,355,162
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Dct
dopachrome tautomerase
acts_upstream_of_or_within
ISO
MGI:1856379 (MGI:76308|PMID:7665913)
RGD
PMID:7665913
MGI:76308
NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
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Ddt
D-dopachrome tautomerase
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr20:12,884,216...12,886,687
Ensembl chr20:12,884,243...12,888,482
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Mc1r
melanocortin 1 receptor
acts_upstream_of_or_within
ISO
MGI:1856028 (MGI:76308|PMID:7665913)
RGD
PMID:7665913
MGI:76308
NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192
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Myo5a
myosin VA
acts_upstream_of_or_within
ISO
MGI:1856004 (MGI:76308|PMID:7665913)
RGD
PMID:7665913
MGI:76308
NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
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Oca2
OCA2 melanosomal transmembrane protein
acts_upstream_of_or_within involved_in
ISO IBA
MGI:1856114 (MGI:1202196|PMID:9548375), (MGI:76308|PMID:7665913) PMID:21873635
RGD
PMID:7665913 PMID:9548375 PMID:21873635
MGI:1202196 MGI:76308 , RGD:13792537
NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
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Pmel
premelanosome protein
acts_upstream_of_or_within
ISO
MGI:1857040 (MGI:76308|PMID:7665913)
RGD
PMID:7665913
MGI:76308
NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
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Slc24a5
solute carrier family 24 member 5
acts_upstream_of
ISO
(MGI:3775882|PMID:18166528)
RGD
PMID:18166528
MGI:3775882
NCBI chr 3:112,319,349...112,338,889
Ensembl chr 3:112,319,308...112,339,231
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Trpc1
transient receptor potential cation channel, subfamily C, member 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:8126111)
Ensembl RGD
PMID:8126111
GO_REF:0000107
NCBI chr 8:96,263,322...96,314,220
Ensembl chr 8:96,263,329...96,314,276
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Tyr
tyrosinase
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:1855976|MGI:1855978 (MGI:1202196|PMID:9548375), (MGI:76308|PMID:7665913) (PMID:8126111)
RGD
PMID:7665913 PMID:8126111 PMID:9548375 PMID:21873635
MGI:1202196 MGI:76308 , RGD:13792537
NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207
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Tyrp1
tyrosinase-related protein 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
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Dct
dopachrome tautomerase
involved_in
ISO
(MGI:3690794|PMID:2169885), (MGI:6827472|PMID:33100333)
RGD
PMID:2169885 PMID:33100333
MGI:3690794 MGI:6827472
NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
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Oca2
OCA2 melanosomal transmembrane protein
involved_in
ISO
(PMID:25513726), (PMID:32966160)
RGD
PMID:25513726 PMID:32966160
NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
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Slc45a2
solute carrier family 45, member 2
involved_in
ISO
(PMID:32966160) (MGI:7338895|PMID:35469906)
RGD
PMID:32966160 PMID:35469906
MGI:7338895
NCBI chr 2:59,963,599...59,996,408
Ensembl chr 2:59,963,706...59,996,317
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Mfsd12
major facilitator superfamily domain containing 12
involved_in
ISO
(MGI:5912387|PMID:29025994)
RGD
PMID:29025994
MGI:5912387
NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988
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Opn3
opsin 3
involved_in
ISO
(PMID:31097585)
RGD
PMID:31097585
NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847
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Rapgef2
Rap guanine nucleotide exchange factor 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5499726|PMID:16272156)
UniProt RGD
PMID:16272156
GO_REF:0000024 MGI:5499726
NCBI chr 2:164,207,513...164,322,157
Ensembl chr 2:164,207,513...164,244,247
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Slc24a5
solute carrier family 24 member 5
acts_upstream_of_or_within
ISO
(MGI:3775882|PMID:18166528)
RGD
PMID:18166528
MGI:3775882
NCBI chr 3:112,319,349...112,338,889
Ensembl chr 3:112,319,308...112,339,231
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Wnt5a
Wnt family member 5A
involved_in
ISO IEA
(MGI:5619434|PMID:23569434) GO_REF:0000107
RGD Ensembl
PMID:23569434
GO_REF:0000107 MGI:5619434
NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
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Appl1
adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1
involved_in
ISO
(PMID:21291857)
RGD
PMID:21291857
NCBI chr16:2,118,503...2,166,741
Ensembl chr16:2,121,255...2,166,692
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Asip
agouti signaling protein
involved_in
IBA IEA
PMID:21873635 GO_REF:0000107
Ensembl
PMID:21873635
GO_REF:0000107, RGD:13792537
NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
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Atp7a
ATPase copper transporting alpha
involved_in
ISS ISO
GO_REF:0000024 (PMID:11092760)
UniProt RGD
PMID:11092760
GO_REF:0000024
NCBI chr X:71,094,144...71,201,550
Ensembl chr X:71,094,202...71,198,354
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Cdh3
cadherin 3
involved_in
ISO
(PMID:23334344)
RGD
PMID:23334344
NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084
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Gipc1
GIPC PDZ domain containing family, member 1
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:21291857) GO_REF:0000107
UniProt RGD Ensembl
PMID:21291857
GO_REF:0000024 GO_REF:0000107
NCBI chr19:24,474,291...24,487,083
Ensembl chr19:24,453,123...24,486,997
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Opn3
opsin 3
involved_in
ISO
(PMID:28842328)
RGD
PMID:28842328
NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847
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Pmel
premelanosome protein
involved_in
ISO
(MGI:5294257|PMID:21949658)
RGD
PMID:21949658
MGI:5294257
NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
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Rab38
RAB38, member RAS oncogene family
IMP
RGD
PMID:17043139
RGD:152025192
NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
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Tyrp1
tyrosinase-related protein 1
involved_in
ISO
(PMID:21996312) UniProtKB:Q03288|UniProtKB:Q60696 (MGI:5294257|PMID:21949658)
RGD
PMID:21949658 PMID:21996312
MGI:5294257
NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
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Ctns
cystinosin, lysosomal cystine transporter
involved_in
ISO
(PMID:22649030)
RGD
PMID:22649030
NCBI chr10:57,801,551...57,817,213
Ensembl chr10:57,801,456...57,817,120
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Mfsd12
major facilitator superfamily domain containing 12
involved_in
ISO
(PMID:33208952) (MGI:6492453|PMID:33208952) (PMID:31117290)
RGD
PMID:31117290 PMID:33208952
MGI:6492453
NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988
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Slc7a11
solute carrier family 7 member 11
acts_upstream_of_or_within
ISO
MGI:1857061 (MGI:3588610|PMID:16037214)
RGD
PMID:16037214
MGI:3588610
NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536
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