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ONTOLOGY REPORT - ANNOTATIONS

Term:amino-acid betaine biosynthetic process
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Accession:GO:0006578 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any betaine, the N-trimethyl derivative of an amino acid.
Synonyms:exact_synonym: betaine anabolism;   betaine biosynthesis;   betaine biosynthetic process;   betaine formation;   betaine synthesis


show annotations for term's descendants           Sort by:
carnitine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO
IEA 		(PMID:16972171)
GO_REF:0000107 		RGD
Ensembl		 PMID:16972171 GO_REF:0000107 NCBI chr 2:245,518,693...245,542,864
Ensembl chr 2:242,858,865...242,883,147 		JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 involved_in TAS
IEA
ISO 		GO_REF:0000041
GO_REF:0000107
(PMID:10702312) 		UniProt
Ensembl
RGD		 PMID:10702312 PMID:10702312 GO_REF:0000041 GO_REF:0000107, RGD:68317 NCBI chr13:82,038,679...82,055,478
Ensembl chr13:79,505,695...79,540,568 		JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 involved_in TAS
IEA
ISO
ISS
IBA 		GO_REF:0000041
(PMID:20599753), (PMID:9753662)
GO_REF:0000024
MGI:104740 (PMID:17692817), (PMID:18945875)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000043
GO_REF:0000002 		UniProt
RGD
GO_Central
Ensembl
InterPro		 PMID:9753662 PMID:17692817 PMID:18945875 PMID:20599753 PMID:10526231 More... GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107, RGD:632240, RGD:8554503 NCBI chr 3:96,822,654...96,871,786
Ensembl chr 3:96,822,655...96,871,458 		JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon involved_in
acts_upstream_of_or_within 		TAS
ISO
IEA
ISS
IBA 		(PMID:23092983)
(PMID:15754339)
GO_REF:0000041
GO_REF:0000024
(PMID:37553674)
(PMID:12121276)
GO_REF:0000033
GO_REF:0000043
GO_REF:0000002 		RGD
UniProt
GO_Central
InterPro		 PMID:12121276 PMID:15754339 PMID:23092983 PMID:37553674 PMID:11431483 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043, RGD:70558 NCBI chr20:91,234...138,942
Ensembl chr20:91,272...140,386 		JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:52,208,035...52,240,293
Ensembl chr18:50,009,934...50,042,193 		JBrowse link
G Chdh choline dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:5,194,269...5,225,541
Ensembl chr16:5,194,269...5,225,537 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        modified amino acid metabolic process 204
          amino-acid betaine metabolic process 19
            amino-acid betaine biosynthetic process 6
              L-proline betaine biosynthetic process 0
              N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process 0
              carnitine biosynthetic process 4
              ergothioneine biosynthetic process + 0
              glycine betaine biosynthetic process + 2
              selenoneine biosynthetic process 0
paths to the root