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ONTOLOGY REPORT - ANNOTATIONS


Term:amino-acid betaine biosynthetic process
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Accession:GO:0006578 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any betaine, the N-trimethyl derivative of an amino acid.
Synonyms:exact_synonym: betaine anabolism;   betaine biosynthesis;   betaine biosynthetic process;   betaine formation;   betaine synthesis



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carnitine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO
IEA
(PMID:16972171)
GO_REF:0000107
RGD
Ensembl
PMID:16972171 GO_REF:0000107 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147
JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 involved_in TAS
IEA
GO_REF:0000041 UniProt
RGD
PMID:10702312 GO_REF:0000041, RGD:68317 NCBI chr13:79,505,738...79,522,539
Ensembl chr13:79,505,695...79,540,568
JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 involved_in TAS
ISS
IBA
ISO
IEA
PMID:9753662
PMID:21873635
GO_REF:0000024
(PMID:20599753), (PMID:9753662)
GO_REF:0000041
UniProt
RGD
PMID:9753662 PMID:20599753 PMID:10526231 PMID:9753662 PMID:21873635 GO_REF:0000024 GO_REF:0000041, RGD:632240, RGD:8554503, RGD:13792537 NCBI chr 3:96,822,654...96,871,786
Ensembl chr 3:96,822,655...96,871,458
JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon involved_in
acts_upstream_of_or_within
TAS
ISO
ISS
IBA
IEA
(PMID:23092983)
(PMID:15754339)
GO_REF:0000024
PMID:21873635
GO_REF:0000041
(MGI:2183690|PMID:12121276)
RGD
UniProt
PMID:12121276 PMID:15754339 PMID:23092983 PMID:11431483 PMID:21873635 GO_REF:0000024 GO_REF:0000041 MGI:2183690, RGD:70558, RGD:13792537 NCBI chr20:91,234...138,942
Ensembl chr20:91,272...140,386
JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:50,003,242...50,042,193
Ensembl chr18:50,009,934...50,042,193
JBrowse link
G Chdh choline dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:5,194,269...5,225,541
Ensembl chr16:5,194,269...5,225,537
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19541
    metabolic process 11844
      cellular metabolic process 10738
        cellular modified amino acid metabolic process 203
          amino-acid betaine metabolic process 20
            amino-acid betaine biosynthetic process 6
              N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process + 0
              carnitine biosynthetic process 4
              ergothioneine biosynthetic process + 0
              glycine betaine biosynthetic process + 2
              selenoneine biosynthetic process 0
              stachydrine biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19541
    metabolic process 11844
      nitrogen compound metabolic process 10013
        organonitrogen compound metabolic process 6865
          organonitrogen compound biosynthetic process 1982
            cellular modified amino acid biosynthetic process 42
              amino-acid betaine biosynthetic process 6
                N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process + 0
                carnitine biosynthetic process 4
                ergothioneine biosynthetic process + 0
                glycine betaine biosynthetic process + 2
                selenoneine biosynthetic process 0
                stachydrine biosynthetic process 0
paths to the root