Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:biogenic amine metabolic process
go back to main search page
Accession:GO:0006576 term browser browse the term
Definition:The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters.
Synonyms:exact_synonym: biogenic amine metabolism;   cellular biogenic amine metabolic process


GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
biogenic amine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl-CpG binding protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3607765|PMID:15975715) MGI
Ensembl
PMID:15975715 GO_REF:0000107 MGI:3607765 NCBI chrNW_004936809:902,938...967,771
Ensembl chrNW_004936809:911,764...966,839
JBrowse link
'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936594:2,794,927...2,805,689
Ensembl chrNW_004936594:2,794,894...2,808,100
JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936508:8,971,516...8,987,235
Ensembl chrNW_004936508:8,971,477...8,986,404
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936843:658,058...672,662
Ensembl chrNW_004936843:657,979...672,700
JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936843:595,237...649,390
Ensembl chrNW_004936843:594,968...649,390
JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936526:8,877,085...8,928,280
Ensembl chrNW_004936526:8,877,434...8,919,548
JBrowse link
G Kynu kynureninase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936469:33,632,885...33,805,158
Ensembl chrNW_004936469:33,632,892...33,734,433
JBrowse link
catecholamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crhr2 corticotropin releasing hormone receptor 2 ISO RGD PMID:17194738 RGD:5131263 NCBI chrNW_004936478:6,901,098...6,947,719
Ensembl chrNW_004936478:6,899,017...6,947,790
JBrowse link
G Ddc dopa decarboxylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936686:1,322,153...1,405,434
Ensembl chrNW_004936686:1,301,207...1,405,384
JBrowse link
G Hdc histidine decarboxylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936471:12,303,802...12,324,613
Ensembl chrNW_004936471:12,304,130...12,324,570
JBrowse link
G Pnmt phenylethanolamine N-methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:14,858,682...14,861,614
Ensembl chrNW_004936490:14,858,603...14,865,321
JBrowse link
G Th tyrosine hydroxylase involved_in ISO
IEA
RGD
UniProt
InterPro
PMID:20025246 GO_REF:0000002 GO_REF:0000043 RGD:4139888 NCBI chrNW_004936794:478,651...486,887
Ensembl chrNW_004936794:478,614...487,061
JBrowse link
catecholamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747
JBrowse link
G LOC101965228 leucine-rich repeat-containing protein 51 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936498:1,446,065...1,465,127
Ensembl chrNW_004936498:1,447,282...1,452,087
Ensembl chrNW_004936498:1,447,282...1,452,087
JBrowse link
G LOC120889646 transmembrane O-methyltransferase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118
catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:54307|PMID:17511) MGI PMID:17511 MGI:54307 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
G Comt catechol-O-methyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3040120|PMID:11849292) UniProt
Ensembl
MGI
InterPro
PMID:11849292 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 MGI:3040120 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747
JBrowse link
G Ddc dopa decarboxylase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936686:1,322,153...1,405,434
Ensembl chrNW_004936686:1,301,207...1,405,384
JBrowse link
G LOC101965228 leucine-rich repeat-containing protein 51 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936498:1,446,065...1,465,127
Ensembl chrNW_004936498:1,447,282...1,452,087
Ensembl chrNW_004936498:1,447,282...1,452,087
JBrowse link
G LOC120889646 transmembrane O-methyltransferase involved_in IEA UniProt GO_REF:0000043
G Maoa monoamine oxidase A involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936502:9,816,443...9,888,002
Ensembl chrNW_004936502:9,815,319...9,888,026
JBrowse link
G Mtpn myotrophin ISO RGD PMID:12051753 RGD:625450 NCBI chrNW_004936592:644,618...679,615
Ensembl chrNW_004936592:644,430...679,800
JBrowse link
dopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtr1 angiotensin II receptor type 1 ISO RGD PMID:20097214 RGD:6903884 NCBI chrNW_004936519:6,831,096...6,873,977
Ensembl chrNW_004936519:6,831,096...6,873,985
JBrowse link
G Agtr2 angiotensin II receptor type 2 ISO RGD PMID:20097214 RGD:6903884 NCBI chrNW_004936479:13,252,678...13,255,570
Ensembl chrNW_004936479:13,252,678...13,255,570
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit ISO RGD PMID:12438507 RGD:704388 NCBI chrNW_004937351:32,324...46,871
Ensembl chrNW_004937351:34,921...47,246
JBrowse link
G Dao D-amino acid oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:744,862...758,086
Ensembl chrNW_004936769:744,864...758,452
JBrowse link
G Ddc dopa decarboxylase ISO RGD PMID:12703659 RGD:4139893 NCBI chrNW_004936686:1,322,153...1,405,434
Ensembl chrNW_004936686:1,301,207...1,405,384
JBrowse link
G Gch1 GTP cyclohydrolase 1 involved_in ISO (PMID:16338639) UniProt PMID:16338639 NCBI chrNW_004936697:232,048...275,420 JBrowse link
G Gpr37 G protein-coupled receptor 37 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046856|PMID:15218106) MGI
Ensembl
PMID:15218106 GO_REF:0000107 MGI:3046856 NCBI chrNW_004936605:978,174...997,093
Ensembl chrNW_004936605:978,980...999,741
JBrowse link
G LOC101961588 cytochrome P450 2D17 ISO RGD PMID:19818757 RGD:5143981 NCBI chrNW_004936718:153,340...157,966 JBrowse link
G Nr4a2 nuclear receptor subfamily 4 group A member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1203924|PMID:9608532), (MGI:3767764|PMID:16782508) MGI
Ensembl
PMID:9608532 PMID:16782508 GO_REF:0000107 MGI:1203924 MGI:3767764 NCBI chrNW_004936469:21,912,118...21,920,486
Ensembl chrNW_004936469:21,912,047...21,920,486
JBrowse link
G Slc6a3 solute carrier family 6 member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2386819|PMID:9520487) MGI
Ensembl
PMID:9520487 GO_REF:0000107 MGI:2386819 NCBI chrNW_004936815:359,775...400,690
Ensembl chrNW_004936815:359,775...400,690
JBrowse link
G Snca synuclein alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1352916|PMID:10707987) MGI
Ensembl
PMID:10707987 GO_REF:0000107 MGI:1352916 NCBI chrNW_004936685:2,077,017...2,175,298
Ensembl chrNW_004936685:2,076,651...2,175,338
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (MGI:3622848|PMID:16257223) UniProt PMID:16257223 MGI:3622848 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007
JBrowse link
G Th tyrosine hydroxylase involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936794:478,651...486,887
Ensembl chrNW_004936794:478,614...487,061
JBrowse link
dopamine biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Th tyrosine hydroxylase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2386819|PMID:9520487)
(MGI:72094|PMID:7715703), (MGI:77787|PMID:7592982)
RGD
TreeGrafter
Ensembl
MGI
PMID:2427363 PMID:7592982 PMID:7715703 PMID:9520487 PMID:19584816 GO_REF:0000107 GO_REF:0000118 MGI:2386819 MGI:72094 MGI:77787 RGD:1580046 RGD:5130972 NCBI chrNW_004936794:478,651...486,887
Ensembl chrNW_004936794:478,614...487,061
JBrowse link
dopamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2386819|PMID:9520487) MGI
Ensembl
PMID:9520487 GO_REF:0000107 MGI:2386819 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747
JBrowse link
G Dbh dopamine beta-hydroxylase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1332340|PMID:10051631) MGI
TreeGrafter
Ensembl
PMID:10051631 GO_REF:0000107 GO_REF:0000118 MGI:1332340 NCBI chrNW_004936669:3,302,014...3,326,233
Ensembl chrNW_004936669:3,301,802...3,320,643
JBrowse link
G LOC101967457 putative DBH-like monooxygenase protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936971:172,262...179,921 JBrowse link
G Maoa monoamine oxidase A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2386819|PMID:9520487) MGI
Ensembl
PMID:9520487 GO_REF:0000107 MGI:2386819 NCBI chrNW_004936502:9,816,443...9,888,002
Ensembl chrNW_004936502:9,815,319...9,888,026
JBrowse link
G Moxd1 monooxygenase DBH like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936560:334,294...413,559
Ensembl chrNW_004936560:332,718...413,559
JBrowse link
G Pde1b phosphodiesterase 1B involved_in
acts_upstream_of_positive_effect
IEA
ISO
(MGI:3769297|PMID:17559891) Ensembl
MGI
PMID:17559891 GO_REF:0000107 MGI:3769297 NCBI chrNW_004936512:11,739,219...11,766,264
Ensembl chrNW_004936512:11,739,213...11,768,190
JBrowse link
G Slc6a3 solute carrier family 6 member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2386819|PMID:9520487) MGI
Ensembl
PMID:9520487 GO_REF:0000107 MGI:2386819 NCBI chrNW_004936815:359,775...400,690
Ensembl chrNW_004936815:359,775...400,690
JBrowse link
dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:50550|PMID:1752214), (MGI:65000|PMID:8174230) MGI PMID:1752214 PMID:8174230 MGI:50550 MGI:65000 MGI:71923 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
G Comt catechol-O-methyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5510279|PMID:23863468)
(MGI:6274079|PMID:27388330)
(MGI:3040120|PMID:11849292), (MGI:3834010|PMID:17881525), (MGI:5314492|PMID:22169008), (MGI:5585563|PMID:24591155), (MGI:6377798|PMID:19770404)
(MGI:4830461|PMID:19930170)
MGI
TreeGrafter
Ensembl
PMID:11849292 PMID:17881525 PMID:19770404 PMID:19930170 PMID:22169008 More... GO_REF:0000107 GO_REF:0000118 MGI:3040120 MGI:3834010 MGI:4830461 MGI:5314492 MGI:5510279 MGI:5585563 MGI:6274079 MGI:6377798 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:68905|PMID:7925842) MGI
Ensembl
PMID:7925842 GO_REF:0000107 MGI:68905 NCBI chrNW_004936612:1,094,686...1,154,149
Ensembl chrNW_004936612:1,094,680...1,154,798
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6416735|PMID:32049342) MGI
Ensembl
PMID:32049342 GO_REF:0000107 MGI:6416735 NCBI chrNW_004936704:1,079,255...1,093,732
Ensembl chrNW_004936704:1,084,587...1,093,691
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2384280|PMID:11160454) MGI
Ensembl
PMID:11160454 GO_REF:0000107 MGI:2384280 NCBI chrNW_004936530:8,286,101...8,612,183
Ensembl chrNW_004936530:8,287,574...8,608,343
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1321418|PMID:9886073), (MGI:65825|PMID:7509865), (MGI:65928|PMID:1432691) MGI
Ensembl
PMID:1432691 PMID:7509865 PMID:9886073 GO_REF:0000107 MGI:1321418 MGI:65825 MGI:65928 NCBI chrNW_004936691:650,753...694,362
Ensembl chrNW_004936691:652,769...694,463
JBrowse link
G LOC101961588 cytochrome P450 2D17 ISO RGD PMID:10945868 RGD:1599723 NCBI chrNW_004936718:153,340...157,966 JBrowse link
G LOC101965228 leucine-rich repeat-containing protein 51 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936498:1,446,065...1,465,127
Ensembl chrNW_004936498:1,447,282...1,452,087
Ensembl chrNW_004936498:1,447,282...1,452,087
JBrowse link
G LOC120889646 transmembrane O-methyltransferase involved_in IEA TreeGrafter GO_REF:0000118
G Myo5a myosin VA ISO RGD PMID:29217155 RGD:42721980 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Ndufs4 NADH:ubiquinone oxidoreductase subunit S4 acts_upstream_of_or_within ISO (MGI:6150107|PMID:28327638) MGI PMID:28327638 MGI:6150107 NCBI chrNW_004936480:13,829,093...13,932,202
Ensembl chrNW_004936480:13,827,743...13,932,238
JBrowse link
G Npr1 natriuretic peptide receptor 1 ISO RGD PMID:15544851 RGD:1580153 NCBI chrNW_004936580:3,479,858...3,496,896
Ensembl chrNW_004936580:3,480,267...3,495,643
JBrowse link
G Nr4a2 nuclear receptor subfamily 4 group A member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3529728|PMID:12385813) MGI
Ensembl
PMID:12385813 GO_REF:0000107 MGI:3529728 NCBI chrNW_004936469:21,912,118...21,920,486
Ensembl chrNW_004936469:21,912,047...21,920,486
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in
NOT|acts_upstream_of_or_within
ISO
IEA
(MGI:2675710|PMID:12915482)
(MGI:3525458|PMID:15684050)
MGI
Ensembl
PMID:12915482 PMID:15684050 GO_REF:0000107 MGI:2675710 MGI:3525458 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872
JBrowse link
G Rnls renalase, FAD dependent amine oxidase acts_upstream_of_or_within ISO (MGI:5433454|PMID:21178975) MGI PMID:21178975 MGI:5433454 NCBI chrNW_004936735:659,826...1,048,135 JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:613,250...690,555
Ensembl chrNW_004936503:613,223...690,721
JBrowse link
G Snca synuclein alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3057254|PMID:15465911) MGI
Ensembl
PMID:15465911 GO_REF:0000107 MGI:3057254 NCBI chrNW_004936685:2,077,017...2,175,298
Ensembl chrNW_004936685:2,076,651...2,175,338
JBrowse link
G Sncaip synuclein alpha interacting protein acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:14506261) MGI
Ensembl
PMID:14506261 GO_REF:0000107 NCBI chrNW_004936575:2,727,253...2,873,428
Ensembl chrNW_004936575:2,727,201...2,872,889
JBrowse link
G Sncb synuclein beta acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3057254|PMID:15465911) MGI
Ensembl
PMID:15465911 GO_REF:0000107 MGI:3057254 NCBI chrNW_004936597:878,270...888,346
Ensembl chrNW_004936597:878,286...888,331
JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within ISO (MGI:3722569|PMID:16532389) MGI PMID:16532389 MGI:3722569 NCBI chrNW_004936491:16,693,940...16,699,040 JBrowse link
ethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chka choline kinase alpha ISO RGD PMID:1577786 RGD:61551 NCBI chrNW_004936599:2,031,953...2,068,423
Ensembl chrNW_004936599:2,001,673...2,067,399
JBrowse link
G Gde1 glycerophosphodiester phosphodiesterase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:5,177,511...5,193,484
Ensembl chrNW_004936501:5,176,909...5,193,543
JBrowse link
histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2138019|PMID:11478947) MGI
TreeGrafter
Ensembl
PMID:11478947 GO_REF:0000107 GO_REF:0000118 MGI:2138019 NCBI chrNW_004936471:12,303,802...12,324,613
Ensembl chrNW_004936471:12,304,130...12,324,570
JBrowse link
G Prg3 proteoglycan 3, pro eosinophil major basic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:5,109,165...5,113,617
Ensembl chrNW_004936581:5,109,165...5,113,411
JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnmt histamine N-methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:38,125,877...38,166,429
Ensembl chrNW_004936469:38,122,454...38,166,398
JBrowse link
histamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase ISO RGD PMID:5898 PMID:4449071 PMID:7075603 PMID:9525922 RGD:2303726 RGD:2303727 RGD:2303728 RGD:2303735 NCBI chrNW_004936471:12,303,802...12,324,613
Ensembl chrNW_004936471:12,304,130...12,324,570
JBrowse link
G Hnmt histamine N-methyltransferase involved_in IEA
ISO
Ensembl
RGD
PMID:15739896 GO_REF:0000107 RGD:152985534 NCBI chrNW_004936469:38,125,877...38,166,429
Ensembl chrNW_004936469:38,122,454...38,166,398
JBrowse link
G Trh thyrotropin releasing hormone involved_in ISO
IEA
RGD
TreeGrafter
PMID:17760865 GO_REF:0000118 RGD:7241067 NCBI chrNW_004936602:623,542...626,337
Ensembl chrNW_004936602:623,535...626,445
JBrowse link
N-acylethanolamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abhd4 abhydrolase domain containing 4, N-acyl phospholipase B acts_upstream_of_or_within ISO (MGI:3695251|PMID:16818490) MGI PMID:16818490 MGI:3695251 NCBI chrNW_004936722:1,658,287...1,671,848
Ensembl chrNW_004936722:1,658,302...1,671,853
JBrowse link
G Gde1 glycerophosphodiester phosphodiesterase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5790171|PMID:25596343) MGI
TreeGrafter
Ensembl
PMID:25596343 GO_REF:0000107 GO_REF:0000118 MGI:5790171 NCBI chrNW_004936501:5,177,511...5,193,484
Ensembl chrNW_004936501:5,176,909...5,193,543
JBrowse link
G Gdpd1 glycerophosphodiester phosphodiesterase domain containing 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5790171|PMID:25596343)
(PMID:25596343)
MGI
TreeGrafter
Ensembl
PMID:25596343 GO_REF:0000107 GO_REF:0000118 MGI:5790171 NCBI chrNW_004936490:4,032,412...4,079,243
Ensembl chrNW_004936490:4,031,163...4,079,347
JBrowse link
G Gdpd3 glycerophosphodiester phosphodiesterase domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,391,204...12,397,877
Ensembl chrNW_004936501:12,391,314...12,397,864
JBrowse link
G Naaa N-acylethanolamine acid amidase involved_in ISO PMID:22860206
(PMID:15655246), (PMID:30301806)
UniProt PMID:15655246 PMID:22860206 PMID:30301806 RGD:39458030 NCBI chrNW_004936598:42,751...56,261 JBrowse link
G Napepld N-acyl phosphatidylethanolamine phospholipase D acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3695251|PMID:16818490)
(MGI:3044670|PMID:14634025)
MGI
TreeGrafter
Ensembl
PMID:14634025 PMID:16818490 GO_REF:0000107 GO_REF:0000118 MGI:3044670 MGI:3695251 NCBI chrNW_004936479:20,259,260...20,293,116
Ensembl chrNW_004936479:20,275,319...20,292,688
JBrowse link
negative regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:54307|PMID:17511) MGI PMID:17511 MGI:54307 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
negative regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase ISO RGD PMID:15190105 RGD:2289786 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747
JBrowse link
G Htr2c 5-hydroxytryptamine receptor 2C ISO RGD PMID:17018023 RGD:1625003 NCBI chrNW_004936499:1,002,083...1,109,446
Ensembl chrNW_004936499:1,004,732...1,109,377
JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (MGI:3814938|PMID:18981141) ARUK-UCL PMID:18981141 MGI:3814938 NCBI chrNW_004936543:8,460,526...8,508,524
Ensembl chrNW_004936543:8,461,307...8,508,524
JBrowse link
G Snca synuclein alpha involved_in ISO PMID:11943812 BHF-UCL PMID:11943812 RGD:5129111 NCBI chrNW_004936685:2,077,017...2,175,298
Ensembl chrNW_004936685:2,076,651...2,175,338
JBrowse link
nor-spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:891,380...892,937
Ensembl chrNW_004936595:889,617...893,067
JBrowse link
norepinephrine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:53940|PMID:4858102)
(MGI:53801|PMID:4405722)
MGI PMID:4405722 PMID:4858102 MGI:53801 MGI:53940 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
G Dbh dopamine beta-hydroxylase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:1203930|PMID:9603211), (MGI:1332340|PMID:10051631) RGD
TreeGrafter
Ensembl
UniProt
MGI
PMID:9603211 PMID:10051631 PMID:10573542 GO_REF:0000041 GO_REF:0000107 GO_REF:0000118 MGI:1203930 MGI:1332340 RGD:1625403 NCBI chrNW_004936669:3,302,014...3,326,233
Ensembl chrNW_004936669:3,301,802...3,320,643
JBrowse link
G Epas1 endothelial PAS domain protein 1 ISO RGD PMID:19457096 RGD:5128877 NCBI chrNW_004936508:5,855,748...5,938,879
Ensembl chrNW_004936508:5,855,732...5,938,856
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1859081|PMID:10835639) MGI
Ensembl
PMID:10835639 GO_REF:0000107 MGI:1859081 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_positive_effect
IEA
ISO
(MGI:4413411|PMID:19008477) Ensembl
BHF-UCL
PMID:19008477 GO_REF:0000107 MGI:4413411 NCBI chrNW_004936516:4,692,926...4,695,625
Ensembl chrNW_004936516:4,692,926...4,695,632
JBrowse link
G Insm1 INSM transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:66,889...69,792
Ensembl chrNW_004936485:68,004...69,596
JBrowse link
G Kl klotho ISO RGD PMID:20086041 RGD:10403068 NCBI chrNW_004936472:27,604,681...27,649,613
Ensembl chrNW_004936472:27,604,517...27,650,086
JBrowse link
G LOC101967457 putative DBH-like monooxygenase protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936971:172,262...179,921 JBrowse link
G Moxd1 monooxygenase DBH like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936560:334,294...413,559
Ensembl chrNW_004936560:332,718...413,559
JBrowse link
G Th tyrosine hydroxylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:478,651...486,887
Ensembl chrNW_004936794:478,614...487,061
JBrowse link
norepinephrine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b1 aldo-keto reductase family 1 member B ISO RGD PMID:10424772 RGD:8548769 NCBI chrNW_004936579:1,312,175...1,328,397 JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:53851|PMID:4147174) MGI PMID:4147174 MGI:53851 MGI:71923 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
G Comt catechol-O-methyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3040120|PMID:11849292), (MGI:5585563|PMID:24591155) MGI
Ensembl
PMID:11849292 PMID:24591155 GO_REF:0000107 MGI:3040120 MGI:5585563 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747
JBrowse link
G Ednra endothelin receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:1,950,117...2,005,786
Ensembl chrNW_004936535:1,949,941...2,005,910
JBrowse link
G Epas1 endothelial PAS domain protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1313089|PMID:9808618) MGI
Ensembl
PMID:9808618 GO_REF:0000107 MGI:1313089 NCBI chrNW_004936508:5,855,748...5,938,879
Ensembl chrNW_004936508:5,855,732...5,938,856
JBrowse link
G Ly6e lymphocyte antigen 6 family member E acts_upstream_of_or_within ISO (MGI:2157257|PMID:11784869) MGI PMID:11784869 MGI:2157257 NCBI chrNW_004936470:8,879,217...8,880,777 JBrowse link
G Pnmt phenylethanolamine N-methyltransferase ISO RGD PMID:3945626 RGD:5130757 NCBI chrNW_004936490:14,858,682...14,861,614
Ensembl chrNW_004936490:14,858,603...14,865,321
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3047192|PMID:15249681) MGI
Ensembl
PMID:15249681 GO_REF:0000107 MGI:3047192 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872
JBrowse link
G Rnf180 ring finger protein 180 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5505713|PMID:23926250) MGI
TreeGrafter
Ensembl
PMID:23926250 GO_REF:0000107 GO_REF:0000118 MGI:5505713 NCBI chrNW_004936480:4,809,103...4,834,977
Ensembl chrNW_004936480:4,659,751...4,834,972
JBrowse link
G Rnls renalase, FAD dependent amine oxidase acts_upstream_of_or_within ISO (MGI:5433454|PMID:21178975) MGI PMID:21178975 MGI:5433454 NCBI chrNW_004936735:659,826...1,048,135 JBrowse link
G Rtl4 retrotransposon Gag like 4 acts_upstream_of_or_within ISO (MGI:5749620|PMID:26402067) MGI PMID:26402067 MGI:5749620 NCBI chrNW_004936499:2,901,534...2,904,565 JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within ISO (MGI:3722569|PMID:16532389) MGI PMID:16532389 MGI:3722569 NCBI chrNW_004936491:16,693,940...16,699,040 JBrowse link
octopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936669:3,302,014...3,326,233
Ensembl chrNW_004936669:3,301,802...3,320,643
JBrowse link
G LOC101967457 putative DBH-like monooxygenase protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936971:172,262...179,921 JBrowse link
G Moxd1 monooxygenase DBH like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936560:334,294...413,559
Ensembl chrNW_004936560:332,718...413,559
JBrowse link
octopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase ISO RGD PMID:11521740 RGD:1625401 NCBI chrNW_004936669:3,302,014...3,326,233
Ensembl chrNW_004936669:3,301,802...3,320,643
JBrowse link
phenylethylamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Maob monoamine oxidase B ISO RGD PMID:18539264 RGD:2316732 NCBI chrNW_004936502:9,907,181...10,014,756
Ensembl chrNW_004936502:9,907,180...10,014,773
JBrowse link
phenylethylamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Maoa monoamine oxidase A ISO RGD PMID:11754741 RGD:1600709 NCBI chrNW_004936502:9,816,443...9,888,002
Ensembl chrNW_004936502:9,815,319...9,888,026
JBrowse link
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936564:6,656,789...6,675,564
Ensembl chrNW_004936564:6,656,746...6,673,462
JBrowse link
G Azin1 antizyme inhibitor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936470:40,801,943...40,832,543
Ensembl chrNW_004936470:40,801,943...40,834,003
JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936474:15,941,655...15,973,481
Ensembl chrNW_004936474:15,941,620...15,973,745
JBrowse link
G LOC101963087 ornithine decarboxylase-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:14,672,217...14,683,650 JBrowse link
G LOC101975476 spermine synthase-like involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936491:8,700,667...8,701,968 JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:295,441...306,154
Ensembl chrNW_004936509:290,675...306,203
JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936588:1,356,769...1,361,037
Ensembl chrNW_004936588:1,356,769...1,361,037
JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936532:6,581,717...6,587,116 JBrowse link
G Sat1 spermidine/spermine N1-acetyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936624:756,761...759,979
Ensembl chrNW_004936624:756,712...759,983
JBrowse link
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 NOT|involved_in ISO (PMID:15283699) UniProt PMID:15283699 NCBI chrNW_004936595:891,380...892,937
Ensembl chrNW_004936595:889,617...893,067
JBrowse link
G Sms spermine synthase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936624:2,345,573...2,402,157
Ensembl chrNW_004936624:2,346,018...2,401,893
JBrowse link
G Srm spermidine synthase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936474:121,135...124,894
Ensembl chrNW_004936474:118,000...124,963
JBrowse link
polyamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh8a1 aldehyde dehydrogenase 8 family member A1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936560:2,562,394...2,580,261
Ensembl chrNW_004936560:2,562,748...2,580,201
JBrowse link
G Paox polyamine oxidase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2663545|PMID:12660232) RGD
Ensembl
MGI
PMID:12660232 PMID:15541750 GO_REF:0000107 MGI:2663545 RGD:7244190 NCBI chrNW_004936486:19,503,631...19,511,918
Ensembl chrNW_004936486:19,503,631...19,511,920
JBrowse link
G Sat1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:15541750 RGD:7244190 NCBI chrNW_004936624:756,761...759,979
Ensembl chrNW_004936624:756,712...759,983
JBrowse link
G Smox spermine oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:14,566,570...14,603,323
Ensembl chrNW_004936485:14,566,277...14,603,338
JBrowse link
polyamine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:562,038...567,709
Ensembl chrNW_004936629:562,022...567,822
JBrowse link
G Hdac6 histone deacetylase 6 NOT|involved_in ISO (PMID:28516954) UniProt PMID:28516954 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053
JBrowse link
polyamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chrNW_004936564:6,656,789...6,675,564
Ensembl chrNW_004936564:6,656,746...6,673,462
JBrowse link
G Odc1 ornithine decarboxylase 1 ISO RGD PMID:10430362 RGD:1578320 NCBI chrNW_004936532:6,581,717...6,587,116 JBrowse link
G Sat1 spermidine/spermine N1-acetyltransferase 1 ISO RGD PMID:11172929 RGD:1599544 NCBI chrNW_004936624:756,761...759,979
Ensembl chrNW_004936624:756,712...759,983
JBrowse link
G Srm spermidine synthase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:121,135...124,894
Ensembl chrNW_004936474:118,000...124,963
JBrowse link
positive regulation of dopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epas1 endothelial PAS domain protein 1 ISO RGD PMID:19457096 RGD:5128877 NCBI chrNW_004936508:5,855,748...5,938,879
Ensembl chrNW_004936508:5,855,732...5,938,856
JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817
JBrowse link
G Vps35 VPS35 retromer complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:50,476...77,797
Ensembl chrNW_004936475:50,321...78,097
JBrowse link
positive regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO RGD PMID:11239920 RGD:10047061 NCBI chrNW_004936530:7,543,743...7,621,392
Ensembl chrNW_004936530:7,543,682...7,622,667
JBrowse link
G Gpr37 G protein-coupled receptor 37 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046856|PMID:15218106) MGI
Ensembl
PMID:15218106 GO_REF:0000107 MGI:3046856 NCBI chrNW_004936605:978,174...997,093
Ensembl chrNW_004936605:978,980...999,741
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936691:650,753...694,362
Ensembl chrNW_004936691:652,769...694,463
JBrowse link
G Maob monoamine oxidase B ISO RGD PMID:12175458 RGD:2316765 NCBI chrNW_004936502:9,907,181...10,014,756
Ensembl chrNW_004936502:9,907,180...10,014,773
JBrowse link
G Npy neuropeptide Y ISO RGD PMID:19579268 RGD:10448966 NCBI chrNW_004936478:1,289,437...1,296,819
Ensembl chrNW_004936478:1,290,505...1,296,874
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,503,631...19,511,918
Ensembl chrNW_004936486:19,503,631...19,511,920
JBrowse link
putrescine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:891,380...892,937
Ensembl chrNW_004936595:889,617...893,067
JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odc1 ornithine decarboxylase 1 ISO RGD PMID:1415709 PMID:10430362 RGD:1578320 RGD:7242912 NCBI chrNW_004936532:6,581,717...6,587,116 JBrowse link
G Paox polyamine oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,503,631...19,511,918
Ensembl chrNW_004936486:19,503,631...19,511,920
JBrowse link
putrescine biosynthetic process from arginine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:668,380...713,720
Ensembl chrNW_004936619:668,351...696,306
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase (putative) involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:3,242,185...3,252,231
Ensembl chrNW_004936474:3,238,447...3,252,272
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:40,801,943...40,832,543
Ensembl chrNW_004936470:40,801,943...40,834,003
JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:15,941,655...15,973,481
Ensembl chrNW_004936474:15,941,620...15,973,745
JBrowse link
G LOC101963087 ornithine decarboxylase-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:14,672,217...14,683,650 JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936532:6,581,717...6,587,116 JBrowse link
putrescine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,503,631...19,511,918
Ensembl chrNW_004936486:19,503,631...19,511,920
JBrowse link
G Sat1 spermidine/spermine N1-acetyltransferase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936624:756,761...759,979
Ensembl chrNW_004936624:756,712...759,983
JBrowse link
putrescine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aoc1 amine oxidase copper containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:6,309,210...6,312,869
Ensembl chrNW_004936527:6,308,682...6,312,815
JBrowse link
regulation of catecholamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vhl von Hippel-Lindau tumor suppressor ISO RGD PMID:11912140 RGD:619592 NCBI chrNW_004936602:3,135,790...3,140,622 JBrowse link
regulation of dopamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh2 aldehyde dehydrogenase 2 family member involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:4,362,693...4,387,705
Ensembl chrNW_004936558:4,362,654...4,390,414
JBrowse link
regulation of dopamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (MGI:3618656|PMID:11282258) MGI PMID:11282258 MGI:3618656 NCBI chrNW_004936580:4,165,255...4,179,285
Ensembl chrNW_004936580:4,166,619...4,186,443
JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2136539|PMID:11438590) MGI
Ensembl
PMID:11438590 GO_REF:0000107 MGI:2136539 NCBI chrNW_004936609:790,647...795,187
Ensembl chrNW_004936609:792,276...793,613
JBrowse link
G Drd4 dopamine receptor D4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1097029|PMID:9323127) MGI
Ensembl
PMID:9323127 GO_REF:0000107 MGI:1097029 NCBI chrNW_004936888:468,334...471,254
Ensembl chrNW_004936888:468,403...471,205
JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:5,042,531...5,047,157
Ensembl chrNW_004936480:5,043,204...5,044,472
JBrowse link
G Nr4a2 nuclear receptor subfamily 4 group A member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2671567|PMID:12915123) MGI
Ensembl
PMID:12915123 GO_REF:0000107 MGI:2671567 NCBI chrNW_004936469:21,912,118...21,920,486
Ensembl chrNW_004936469:21,912,047...21,920,486
JBrowse link
G Pnkd PNKD metallo-beta-lactamase domain containing acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5466578|PMID:22214848) MGI
Ensembl
PMID:22214848 GO_REF:0000107 MGI:5466578 NCBI chrNW_004936569:799,963...865,462
Ensembl chrNW_004936569:799,926...865,700
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872
JBrowse link
G Slc6a3 solute carrier family 6 member 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2386819|PMID:9520487), (MGI:894559|PMID:9247269) MGI
Ensembl
PMID:9247269 PMID:9520487 GO_REF:0000107 MGI:2386819 MGI:894559 NCBI chrNW_004936815:359,775...400,690
Ensembl chrNW_004936815:359,775...400,690
JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101961588 cytochrome P450 2D17 ISO RGD PMID:23098818 RGD:11353778 NCBI chrNW_004936718:153,340...157,966 JBrowse link
spermidine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat1 spermidine/spermine N1-acetyltransferase 1 involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:15541750 GO_REF:0000107 GO_REF:0000118 RGD:7244190 NCBI chrNW_004936624:756,761...759,979
Ensembl chrNW_004936624:756,712...759,983
JBrowse link
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 NOT|involved_in ISO
IEA
(PMID:15283699) UniProt
Ensembl
PMID:15283699 GO_REF:0000107 NCBI chrNW_004936595:891,380...892,937
Ensembl chrNW_004936595:889,617...893,067
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 involved_in ISO
IEA
RGD
TreeGrafter
UniProt
InterPro
PMID:1415709 PMID:10430362 PMID:10712236 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 RGD:1578320 RGD:7242911 RGD:7242912 NCBI chrNW_004936564:6,656,789...6,675,564
Ensembl chrNW_004936564:6,656,746...6,673,462
JBrowse link
G Srm spermidine synthase involved_in ISO
IEA
RGD
Ensembl
PMID:8494549 PMID:12843627 PMID:16931179 GO_REF:0000107 RGD:1359042 RGD:7242920 RGD:7242928 NCBI chrNW_004936474:121,135...124,894
Ensembl chrNW_004936474:118,000...124,963
JBrowse link
spermidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhps deoxyhypusine synthase ISO RGD PMID:7721768 RGD:2316236 NCBI chrNW_004936659:1,803,581...1,810,121
Ensembl chrNW_004936659:1,800,942...1,810,224
JBrowse link
G Paox polyamine oxidase involved_in ISO
IEA
RGD
Ensembl
PMID:7560898 GO_REF:0000107 RGD:7244191 NCBI chrNW_004936486:19,503,631...19,511,918
Ensembl chrNW_004936486:19,503,631...19,511,920
JBrowse link
spermidine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:562,038...567,709
Ensembl chrNW_004936629:562,022...567,822
JBrowse link
G Hdac6 histone deacetylase 6 NOT|involved_in ISO (PMID:28516954) UniProt PMID:28516954 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053
JBrowse link
spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhps deoxyhypusine synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,803,581...1,810,121
Ensembl chrNW_004936659:1,800,942...1,810,224
JBrowse link
spermine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:891,380...892,937
Ensembl chrNW_004936595:889,617...893,067
JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 involved_in ISO
IEA
RGD
TreeGrafter
InterPro
PMID:1415709 PMID:10430362 PMID:10712236 GO_REF:0000002 GO_REF:0000118 RGD:1578320 RGD:7242911 RGD:7242912 NCBI chrNW_004936564:6,656,789...6,675,564
Ensembl chrNW_004936564:6,656,746...6,673,462
JBrowse link
G LOC101975476 spermine synthase-like involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936491:8,700,667...8,701,968 JBrowse link
G Sms spermine synthase involved_in ISO
IEA
RGD
TreeGrafter
InterPro
PMID:8494549 GO_REF:0000002 GO_REF:0000118 RGD:7242928 NCBI chrNW_004936624:2,345,573...2,402,157
Ensembl chrNW_004936624:2,346,018...2,401,893
JBrowse link
spermine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase involved_in ISO
IEA
RGD
Ensembl
PMID:7560898 GO_REF:0000107 RGD:7244191 NCBI chrNW_004936486:19,503,631...19,511,918
Ensembl chrNW_004936486:19,503,631...19,511,920
JBrowse link
G Smox spermine oxidase involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2429361|PMID:12141946) RGD
Ensembl
MGI
PMID:12141946 PMID:15541750 GO_REF:0000107 MGI:2429361 RGD:7244190 NCBI chrNW_004936485:14,566,570...14,603,323
Ensembl chrNW_004936485:14,566,277...14,603,338
JBrowse link
spermine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sms spermine synthase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1197776|PMID:9467015) MGI
Ensembl
PMID:9467015 GO_REF:0000107 MGI:1197776 NCBI chrNW_004936624:2,345,573...2,402,157
Ensembl chrNW_004936624:2,346,018...2,401,893
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chrNW_004936469:40,858,338...40,904,807
Ensembl chrNW_004936469:40,858,338...40,904,807
JBrowse link
G Afmid arylformamidase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936594:2,794,927...2,805,689
Ensembl chrNW_004936594:2,794,894...2,808,100
JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936508:8,971,516...8,987,235
Ensembl chrNW_004936508:8,971,477...8,986,404
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936843:658,058...672,662
Ensembl chrNW_004936843:657,979...672,700
JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936843:595,237...649,390
Ensembl chrNW_004936843:594,968...649,390
JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,674,612...3,715,036
Ensembl chrNW_004936664:3,675,805...3,686,262
JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936526:8,877,085...8,928,280
Ensembl chrNW_004936526:8,877,434...8,919,548
JBrowse link
G Kynu kynureninase involved_in IEA Ensembl
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936469:33,632,885...33,805,158
Ensembl chrNW_004936469:33,632,892...33,734,433
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 GO_REF:0000117 NCBI chrNW_004936576:2,537,702...2,555,790
Ensembl chrNW_004936576:2,537,702...2,555,785
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004936469:33,632,885...33,805,158
Ensembl chrNW_004936469:33,632,892...33,734,433
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in ISO
IEA
RGD
TreeGrafter
PMID:7236232 GO_REF:0000118 RGD:2303721 NCBI chrNW_004936576:2,537,702...2,555,790
Ensembl chrNW_004936576:2,537,702...2,555,785
JBrowse link
tryptophan catabolic process to indole-3-acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il4i1 interleukin 4 induced 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,674,612...3,715,036
Ensembl chrNW_004936664:3,675,805...3,686,262
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3587527|PMID:15866519) MGI
InterPro
UniProt
PMID:15866519 GO_REF:0000002 GO_REF:0000041 MGI:3587527 NCBI chrNW_004936594:2,794,927...2,805,689
Ensembl chrNW_004936594:2,794,894...2,808,100
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:2151782|PMID:2419335), (MGI:2156954|PMID:11751753) RGD
TreeGrafter
InterPro
Ensembl
MGI
PMID:2419335 PMID:10719243 PMID:11513477 PMID:11751753 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:2151782 MGI:2156954 RGD:2290190 RGD:2290543 NCBI chrNW_004936843:658,058...672,662
Ensembl chrNW_004936843:657,979...672,700
JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3712725|PMID:17499941)
(MGI:3719924|PMID:17671174)
MGI
TreeGrafter
InterPro
Ensembl
PMID:17499941 PMID:17671174 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 MGI:3712725 MGI:3719924 NCBI chrNW_004936843:595,237...649,390
Ensembl chrNW_004936843:594,968...649,390
JBrowse link
G Kynu kynureninase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936469:33,632,885...33,805,158
Ensembl chrNW_004936469:33,632,892...33,734,433
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in IEA Ensembl
UniProt
InterPro
GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004936576:2,537,702...2,555,790
Ensembl chrNW_004936576:2,537,702...2,555,785
JBrowse link
tryptophan metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:53851|PMID:4147174) MGI PMID:4147174 MGI:53851 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO RGD PMID:3400092 PMID:3899109 PMID:10719243 RGD:2290190 RGD:2290313 RGD:2291804 NCBI chrNW_004936576:2,537,702...2,555,790
Ensembl chrNW_004936576:2,537,702...2,555,785
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15868
    metabolic process 9524
      organic substance metabolic process 9089
        organonitrogen compound metabolic process 4705
          amine metabolic process 124
            biogenic amine metabolic process 104
              biogenic amine biosynthetic process + 44
              catecholamine metabolic process + 63
              ethanolamine-containing compound metabolic process + 10
              histamine metabolic process + 4
              indolalkylamine metabolic process + 11
              nicotianamine metabolic process + 0
              phenylethylamine metabolic process + 2
              polyamine metabolic process + 21
paths to the root