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ONTOLOGY REPORT - ANNOTATIONS


Term:tryptophan metabolic process
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Accession:GO:0006568 term browser browse the term
Definition:The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
Synonyms:exact_synonym: tryptophan metabolism
 xref: Wikipedia:Tryptophan


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tryptophan metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha ISO (MGI:53851|PMID:4147174) MGI PMID:4147174 MGI:53851 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO RGD PMID:3400092 PMID:3899109 PMID:10719243 RGD:2290190 RGD:2290313 RGD:2291804 NCBI chrNW_004955471:11,229,795...11,245,255
Ensembl chrNW_004955471:11,229,273...11,245,375
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chrNW_004955440:2,348,434...2,412,706
Ensembl chrNW_004955440:2,348,396...2,412,706
JBrowse link
G Kynu kynureninase ISO (PMID:17334708) UniProtKB PMID:17334708 NCBI chrNW_004955440:9,420,141...9,536,767
Ensembl chrNW_004955440:9,420,009...9,536,761
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004955440:9,420,141...9,536,767
Ensembl chrNW_004955440:9,420,009...9,536,761
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004955471:11,229,795...11,245,255
Ensembl chrNW_004955471:11,229,273...11,245,375
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase ISO (MGI:3587527|PMID:15866519) MGI PMID:15866519 MGI:3587527 NCBI chrNW_004955506:4,351,623...4,379,528
Ensembl chrNW_004955506:4,365,926...4,379,447
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 ISO (MGI:2151782|PMID:2419335), (MGI:2156954|PMID:11751753) RGD
MGI
PMID:2419335 PMID:10719243 PMID:11513477 PMID:11751753 MGI:2151782 MGI:2156954 RGD:2290190 RGD:2290543 NCBI chrNW_004955536:2,944,770...2,955,829
Ensembl chrNW_004955536:2,943,611...2,955,829
JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 ISO (PMID:17671174)
(MGI:3712725|PMID:17499941)
(MGI:3719924|PMID:17671174)
UniProtKB
MGI
PMID:17499941 PMID:17671174 MGI:3712725 MGI:3719924 NCBI chrNW_004955536:2,894,410...2,938,862
Ensembl chrNW_004955536:2,894,308...2,939,016
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO (PMID:27762317) UniProtKB PMID:27762317 NCBI chrNW_004955471:11,229,795...11,245,255
Ensembl chrNW_004955471:11,229,273...11,245,375
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11920
    metabolic process 7539
      cellular metabolic process 6947
        cellular aromatic compound metabolic process 3722
          aromatic amino acid family metabolic process 19
            tryptophan metabolic process 7
              'de novo' NAD biosynthetic process from tryptophan + 0
              indoleacetic acid biosynthetic process via tryptophan + 0
              nicotinate nucleotide biosynthetic process from tryptophan 0
              positive regulation of tryptophan metabolic process + 0
              psilocybin biosynthetic process 0
              regulation of tryptophan metabolic process + 0
              serotonin biosynthetic process from tryptophan + 0
              tryptophan biosynthetic process 0
              tryptophan catabolic process + 6
Path 2
Term Annotations click to browse term
  biological_process 11920
    metabolic process 7539
      organic substance metabolic process 7249
        organonitrogen compound metabolic process 4307
          amine metabolic process 96
            cellular amine metabolic process 94
              cellular biogenic amine metabolic process 81
                indolalkylamine metabolic process 7
                  tryptophan metabolic process 7
                    'de novo' NAD biosynthetic process from tryptophan + 0
                    indoleacetic acid biosynthetic process via tryptophan + 0
                    nicotinate nucleotide biosynthetic process from tryptophan 0
                    positive regulation of tryptophan metabolic process + 0
                    psilocybin biosynthetic process 0
                    regulation of tryptophan metabolic process + 0
                    serotonin biosynthetic process from tryptophan + 0
                    tryptophan biosynthetic process 0
                    tryptophan catabolic process + 6
paths to the root