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ONTOLOGY REPORT - ANNOTATIONS

Term:L-serine catabolic process
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Accession:GO:0006565 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
Synonyms:exact_synonym: L-serine breakdown;   L-serine catabolism;   L-serine degradation
 xref: MetaCyc:SERDEG-PWY


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L-serine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in ISO (PMID:18776696) RGD PMID:18776696 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G ENSRNOG00000065410 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 2:178,497,468...178,499,169 JBrowse link
G Sds serine dehydratase involved_in IEA
ISO
IBA		 GO_REF:0000107
(PMID:15689518), (PMID:18342636)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:15689518 PMID:18342636 GO_REF:0000033 GO_REF:0000107 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203 		JBrowse link
G Sdsl serine dehydratase-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:36,099,693...36,109,914
Ensembl chr12:36,099,693...36,109,906 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:17482557) RGD PMID:17482557 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      primary metabolic process 10271
        amino acid metabolic process 302
          proteinogenic amino acid metabolic process 175
            serine family amino acid metabolic process 44
              L-serine metabolic process 12
                L-serine catabolic process 6
Path 2
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cellular metabolic process 10279
        organic acid metabolic process 1074
          oxoacid metabolic process 1056
            carboxylic acid metabolic process 1037
              alpha-amino acid metabolic process 222
                L-amino acid metabolic process 188
                  serine family amino acid metabolic process 44
                    L-serine metabolic process 12
                      L-serine catabolic process 6
paths to the root