Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:methionine metabolic process
go back to main search page
Accession:GO:0006555 term browser browse the term
Definition:The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.
Synonyms:exact_synonym: methionine metabolism
 broad_synonym: methionine and threonine metabolic process;   methionine and threonine metabolism
 xref: UM-BBD_pathwayID:met

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
methionine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936532:1,684,281...1,693,835
Ensembl chrNW_004936532:1,682,223...1,691,104 		JBrowse link
G Gnmt glycine N-methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17937387) Ensembl
MGI		 PMID:17937387 GO_REF:0000107 NCBI chrNW_004936476:16,961,734...16,965,487
Ensembl chrNW_004936476:16,957,270...16,965,346 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:21121936 RGD:7207080 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148 		JBrowse link
'de novo' L-methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101972215 betaine--homocysteine S-methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:6,938,100...6,956,380
Ensembl chrNW_004936549:6,938,092...6,957,363 		JBrowse link
L-methionine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971919 S-methylmethionine--homocysteine S-methyltransferase BHMT2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936549:6,900,075...6,914,217
Ensembl chrNW_004936549:6,899,948...6,914,263 		JBrowse link
G LOC101972215 betaine--homocysteine S-methyltransferase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936549:6,938,100...6,956,380
Ensembl chrNW_004936549:6,938,092...6,957,363 		JBrowse link
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936532:1,684,281...1,693,835
Ensembl chrNW_004936532:1,682,223...1,691,104 		JBrowse link
G Apip APAF1 interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936533:3,216,020...3,238,999
Ensembl chrNW_004936533:3,216,187...3,238,776 		JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt
InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004936738:2,034,169...2,062,271 JBrowse link
G LOC101963666 enolase-phosphatase E1-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936765:337,546...338,719 JBrowse link
G LOC120890996 enolase-phosphatase E1-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004936659:2,526,274...2,532,878
Ensembl chrNW_004936659:2,527,472...2,532,416 		JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IEA UniProt
TreeGrafter		 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936652:3,431,588...3,468,770
Ensembl chrNW_004936652:3,431,171...3,472,071 		JBrowse link
L-methionine salvage from S-adenosylmethionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936738:2,034,169...2,062,271 JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936659:2,526,274...2,532,878
Ensembl chrNW_004936659:2,527,472...2,532,416 		JBrowse link
methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936532:1,684,281...1,693,835
Ensembl chrNW_004936532:1,682,223...1,691,104 		JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936738:2,034,169...2,062,271 JBrowse link
G LOC101963666 enolase-phosphatase E1-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936765:337,546...338,719 JBrowse link
G LOC101971919 S-methylmethionine--homocysteine S-methyltransferase BHMT2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000117 NCBI chrNW_004936549:6,900,075...6,914,217
Ensembl chrNW_004936549:6,899,948...6,914,263 		JBrowse link
G LOC101972215 betaine--homocysteine S-methyltransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15217352) RGD
MGI
UniProt
InterPro		 PMID:15217352 PMID:15845641 GO_REF:0000002 GO_REF:0000117 RGD:1359026 NCBI chrNW_004936549:6,938,100...6,956,380
Ensembl chrNW_004936549:6,938,092...6,957,363 		JBrowse link
G LOC120890996 enolase-phosphatase E1-like involved_in IEA UniProt GO_REF:0000043
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936659:2,526,274...2,532,878
Ensembl chrNW_004936659:2,527,472...2,532,416 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:8,100,977...8,170,244
Ensembl chrNW_004936495:8,100,912...8,171,800 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15217352) MGI
TreeGrafter		 PMID:15217352 GO_REF:0000118 NCBI chrNW_004936474:623,438...637,849
Ensembl chrNW_004936474:623,291...638,193 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:11158293) RGD
TreeGrafter
MGI
UniProt
Ensembl
InterPro		 PMID:11158293 PMID:11730351 PMID:15845641 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 RGD:1359026 RGD:1601423 NCBI chrNW_004936484:16,087,924...16,180,089
Ensembl chrNW_004936484:16,087,923...16,180,148 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936643:379,790...410,034
Ensembl chrNW_004936643:380,968...409,464 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936716:126,628...142,986
Ensembl chrNW_004936716:126,574...143,155 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16138
    cellular process 15774
      metabolic process 10261
        sulfur compound metabolic process 329
          sulfur amino acid metabolic process 32
            methionine metabolic process 15
              methionine biosynthetic process + 13
              methionine catabolic process + 1
Path 2
Term Annotations click to browse term
  biological_process 16138
    cellular process 15774
      metabolic process 10261
        small molecule metabolic process 1637
          organic acid metabolic process 891
            oxoacid metabolic process 874
              carboxylic acid metabolic process 863
                alpha-amino acid metabolic process 215
                  L-amino acid metabolic process 186
                    aspartate family amino acid metabolic process 46
                      methionine metabolic process 15
                        methionine biosynthetic process + 13
                        methionine catabolic process + 1
paths to the root