Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:histidine catabolic process
go back to main search page
Accession:GO:0006548 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
Synonyms:exact_synonym: histidine breakdown;   histidine catabolism;   histidine degradation

show annotations for term's descendants           Sort by:
 
histidine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:87,551,887...87,569,271
Ensembl chr 5:87,553,022...87,569,305 		JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IC (PMID:2572277) BHF-UCL PMID:2572277
G HAL histidine ammonia-lyase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:87,522,483...87,547,489
Ensembl chr 5:87,522,522...87,547,491 		JBrowse link
G HDC histidine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:121,505,677...121,525,416
Ensembl chr 1:121,505,742...121,525,255 		JBrowse link
G UROC1 urocanate hydratase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:53,592,763...53,634,214
Ensembl chr 7:53,590,776...53,637,714 		JBrowse link
histidine catabolic process to glutamate and formamide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IEA UniProt GO_REF:0000041 NCBI chr 5:87,551,887...87,569,271
Ensembl chr 5:87,553,022...87,569,305 		JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IEA UniProt GO_REF:0000041
G HAL histidine ammonia-lyase IEA UniProt GO_REF:0000041 NCBI chr 5:87,522,483...87,547,489
Ensembl chr 5:87,522,522...87,547,491 		JBrowse link
G UROC1 urocanate hydratase 1 IEA UniProt GO_REF:0000041 NCBI chr 7:53,592,763...53,634,214
Ensembl chr 7:53,590,776...53,637,714 		JBrowse link
histidine catabolic process to glutamate and formate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IEA UniProt GO_REF:0000041 NCBI chr 5:87,551,887...87,569,271
Ensembl chr 5:87,553,022...87,569,305 		JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IEA UniProt GO_REF:0000041
G HAL histidine ammonia-lyase IEA UniProt GO_REF:0000041 NCBI chr 5:87,522,483...87,547,489
Ensembl chr 5:87,522,522...87,547,491 		JBrowse link
G UROC1 urocanate hydratase 1 IEA UniProt GO_REF:0000041 NCBI chr 7:53,592,763...53,634,214
Ensembl chr 7:53,590,776...53,637,714 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16530
    metabolic process 10415
      primary metabolic process 9298
        cellular amino acid metabolic process 256
          histidine metabolic process 5
            histidine catabolic process 5
              N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine 0
              histidine catabolic process to 2-oxoglutarate 0
              histidine catabolic process to glutamate and formamide 4
              histidine catabolic process to glutamate and formate 4
              histidine catabolic process to hydantoin-5-propionate 0
              histidine catabolic process to imidazol-5-yl-lactate 0
Path 2
Term Annotations click to browse term
  biological_process 16530
    metabolic process 10415
      cellular metabolic process 9506
        organic acid metabolic process 870
          oxoacid metabolic process 836
            carboxylic acid metabolic process 819
              cellular amino acid metabolic process 256
                histidine metabolic process 5
                  histidine catabolic process 5
                    N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine 0
                    histidine catabolic process to 2-oxoglutarate 0
                    histidine catabolic process to glutamate and formamide 4
                    histidine catabolic process to glutamate and formate 4
                    histidine catabolic process to hydantoin-5-propionate 0
                    histidine catabolic process to imidazol-5-yl-lactate 0
paths to the root