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ONTOLOGY REPORT - ANNOTATIONS


Term:glycine metabolic process
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Accession:GO:0006544 term browser browse the term
Definition:The chemical reactions and pathways involving glycine, aminoethanoic acid.
Synonyms:exact_synonym: glycine metabolism


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glycine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:4078017 RGD:2301990 NCBI chrNW_004936500:8,750,928...8,782,303 JBrowse link
G LOC101964621 glycine N-methyltransferase ISO PMID:10756111 CAFA
RGD
PMID:10756111, PMID:18501206 RGD:12793006, RGD:7242952 NCBI chrNW_004936476:16,961,734...16,965,487 JBrowse link
G Phgdh phosphoglycerate dehydrogenase ISO (MGI:3835979|PMID:19114063) MGI PMID:19114063 MGI:3835979 NCBI chrNW_004936627:4,414,122...4,448,347 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO (PMID:24698160) UniProtKB
RGD
PMID:15671219, PMID:24698160 RGD:1359815 NCBI chrNW_004936741:1,849,239...1,877,724 JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO (PMID:25619277), (PMID:29180469)
(PMID:19513116)
UniProtKB
BHF-UCL
RGD
PMID:10457370, PMID:15671219, PMID:19513116, PMID:25619277, PMID:29180469 RGD:1359815, RGD:2300380 NCBI chrNW_004936646:1,422,844...1,427,929 JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shmt1 serine hydroxymethyltransferase 1 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chrNW_004936741:1,849,239...1,877,724 JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chrNW_004936646:1,422,844...1,427,929 JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shmt1 serine hydroxymethyltransferase 1 ISO in the presence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chrNW_004936741:1,849,239...1,877,724 JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO in the presence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chrNW_004936646:1,422,844...1,427,929 JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO (PMID:22198249) RGD
UniProtKB
PMID:12383475, PMID:22198249 RGD:1599457 NCBI chrNW_004936745:856,915...867,477 JBrowse link
G Agxt2 alanine--glyoxylate aminotransferase 2 ISO (PMID:20018850) BHF-UCL PMID:20018850 NCBI chrNW_004936518:6,508,928...6,544,324 JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gldc glycine decarboxylase ISO (PMID:28244183) UniProtKB PMID:28244183 NCBI chrNW_004936539:1,008,340...1,095,044 JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amt aminomethyltransferase ISO (PMID:16051266) UniProtKB PMID:16051266 NCBI chrNW_004936529:1,049,364...1,054,458 JBrowse link
G Gcsh glycine cleavage system protein H ISO RGD PMID:6402507 RGD:1598699 NCBI chrNW_004936475:28,749,545...28,760,242 JBrowse link
G Gldc glycine decarboxylase ISO RGD PMID:6778858 RGD:1642728 NCBI chrNW_004936539:1,008,340...1,095,044 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12002
    metabolic process 7668
      primary metabolic process 6795
        cellular amino acid metabolic process 180
          alpha-amino acid metabolic process 133
            serine family amino acid metabolic process 28
              glycine metabolic process 10
                L-threonine catabolic process to glycine 0
                glycine betaine biosynthetic process from glycine 0
                glycine biosynthetic process + 4
                glycine catabolic process + 3
                protoporphyrinogen IX biosynthetic process from glycine 0
                tetrapyrrole biosynthetic process from glycine and succinyl-CoA + 0
Path 2
Term Annotations click to browse term
  biological_process 12002
    metabolic process 7668
      cellular metabolic process 7071
        organic acid metabolic process 639
          oxoacid metabolic process 617
            carboxylic acid metabolic process 610
              cellular amino acid metabolic process 180
                alpha-amino acid metabolic process 133
                  serine family amino acid metabolic process 28
                    glycine metabolic process 10
                      L-threonine catabolic process to glycine 0
                      glycine betaine biosynthetic process from glycine 0
                      glycine biosynthetic process + 4
                      glycine catabolic process + 3
                      protoporphyrinogen IX biosynthetic process from glycine 0
                      tetrapyrrole biosynthetic process from glycine and succinyl-CoA + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.