Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:glycine metabolic process
go back to main search page
Accession:GO:0006544 term browser browse the term
Definition:The chemical reactions and pathways involving glycine, aminoethanoic acid.
Synonyms:exact_synonym: glycine metabolism


show annotations for term's descendants           Sort by:
 
glycine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAAT bile acid-CoA:amino acid N-acyltransferase IDA (PMID:8034703) UniProtKB PMID:8034703 NCBI chr 9:101,360,417...101,385,006
Ensembl chr 9:101,354,182...101,385,400
Ensembl chr 9:101,354,182...101,385,400
JBrowse link
G GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase IEA Ensembl GO_REF:0000107 NCBI chr21:33,503,931...33,542,892
Ensembl chr21:33,503,931...33,543,491
JBrowse link
G GLYAT glycine-N-acyltransferase IDA
IBA
ISS
(PMID:22475485)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:22475485 GO_REF:0000024 NCBI chr11:58,708,757...58,731,943
Ensembl chr11:58,640,426...58,731,974
JBrowse link
G GNMT glycine N-methyltransferase ISO PMID:10756111 RGD
CAFA
PMID:10756111, PMID:18501206 RGD:12793006, RGD:7242952 NCBI chr 6:42,960,754...42,963,880
Ensembl chr 6:42,960,754...42,963,880
JBrowse link
G PHGDH phosphoglycerate dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 1:119,711,934...119,744,218
Ensembl chr 1:119,648,411...119,744,218
Ensembl chr 1:119,648,411...119,744,218
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IDA
IBA
(PMID:24698160)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:24698160 NCBI chr17:18,327,873...18,363,560
Ensembl chr17:18,327,860...18,363,563
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IGI
IBA
IDA
(PMID:19513116)
(PMID:21873635)
(PMID:25619277), (PMID:29180469)
BHF-UCL
GO_Central
UniProtKB
PMID:19513116, PMID:21873635, PMID:25619277, PMID:29180469 NCBI chr12:57,229,685...57,234,935
Ensembl chr12:57,229,573...57,234,935
JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHMT1 serine hydroxymethyltransferase 1 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr17:18,327,873...18,363,560
Ensembl chr17:18,327,860...18,363,563
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr12:57,229,685...57,234,935
Ensembl chr12:57,229,573...57,234,935
JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHMT1 serine hydroxymethyltransferase 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr17:18,327,873...18,363,560
Ensembl chr17:18,327,860...18,363,563
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr12:57,229,685...57,234,935
Ensembl chr12:57,229,573...57,234,935
JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase IDA
IBA
(PMID:22198249)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:22198249 NCBI chr 2:240,868,824...240,880,500
Ensembl chr 2:240,868,824...240,880,502
JBrowse link
G AGXT2 alanine--glyoxylate aminotransferase 2 IDA (PMID:20018850) BHF-UCL PMID:20018850 NCBI chr 5:34,998,099...35,048,188
Ensembl chr 5:34,998,101...35,048,135
JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC104452.1 novel protein IEA InterPro GO_REF:0000002 Ensembl chr 3:49,416,777...49,429,314 JBrowse link
G AMT aminomethyltransferase IEA
TAS
(PMID:9600239) InterPro
PINC
PMID:9600239 GO_REF:0000002 NCBI chr 3:49,416,778...49,422,473
Ensembl chr 3:49,416,778...49,422,685
Ensembl chr 3:49,416,778...49,422,685
JBrowse link
G GCSH glycine cleavage system protein H TAS (PMID:1671321) PINC PMID:1671321 NCBI chr16:81,081,945...81,096,395
Ensembl chr16:81,081,945...81,096,395
Ensembl chr16:81,081,945...81,096,395
JBrowse link
G GLDC glycine decarboxylase IEA
IDA
(PMID:28244183) InterPro
UniProtKB
PMID:28244183 GO_REF:0000002 NCBI chr 9:6,532,467...6,645,729
Ensembl chr 9:6,532,464...6,645,783
Ensembl chr 9:6,532,464...6,645,783
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC092718.3 novel protein IEA UniProt GO_REF:0000104 Ensembl chr16:81,053,587...81,096,296 JBrowse link
G AC092718.8 novel protein IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000104 Ensembl chr16:81,022,316...81,096,284 JBrowse link
G AMT aminomethyltransferase IMP
IBA
(PMID:16051266)
(PMID:21873635)
UniProtKB
GO_Central
PMID:16051266, PMID:21873635 NCBI chr 3:49,416,778...49,422,473
Ensembl chr 3:49,416,778...49,422,685
Ensembl chr 3:49,416,778...49,422,685
JBrowse link
G GCSH glycine cleavage system protein H IEA InterPro
UniProtKB
GO_REF:0000002, GO_REF:0000104 NCBI chr16:81,081,945...81,096,395
Ensembl chr16:81,081,945...81,096,395
Ensembl chr16:81,081,945...81,096,395
JBrowse link
G GLDC glycine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:6,532,467...6,645,729
Ensembl chr 9:6,532,464...6,645,783
Ensembl chr 9:6,532,464...6,645,783
JBrowse link
L-threonine catabolic process to glycine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCAT glycine C-acetyltransferase IEA
TAS
UniProtKB
Reactome
GO_REF:0000041, Reactome:R-HSA-8849175 NCBI chr22:37,807,894...37,817,183
Ensembl chr22:37,807,905...37,817,176
JBrowse link
G RIDA reactive intermediate imine deaminase A homolog TAS Reactome Reactome:R-HSA-8849175 NCBI chr 8:98,102,344...98,117,171
Ensembl chr 8:98,102,344...98,117,171
JBrowse link
G SDS serine dehydratase TAS Reactome Reactome:R-HSA-8849175 NCBI chr12:113,392,445...113,403,887
Ensembl chr12:113,392,445...113,426,301
JBrowse link
G SDSL serine dehydratase like TAS Reactome Reactome:R-HSA-8849175 NCBI chr12:113,422,265...113,438,277
Ensembl chr12:113,422,380...113,438,276
JBrowse link
G TDH L-threonine dehydrogenase (pseudogene) TAS Reactome Reactome:R-HSA-8849175 NCBI chr 8:11,339,637...11,368,452
Ensembl chr 8:11,339,637...11,368,452
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    metabolic process 12302
      primary metabolic process 10998
        cellular amino acid metabolic process 350
          alpha-amino acid metabolic process 208
            serine family amino acid metabolic process 46
              glycine metabolic process 20
                L-threonine catabolic process to glycine 5
                glycine betaine biosynthetic process from glycine 0
                glycine biosynthetic process + 4
                glycine catabolic process + 6
                protoporphyrinogen IX biosynthetic process from glycine 0
                tetrapyrrole biosynthetic process from glycine and succinyl-CoA + 0
Path 2
Term Annotations click to browse term
  biological_process 18672
    metabolic process 12302
      cellular metabolic process 11278
        organic acid metabolic process 1143
          oxoacid metabolic process 1106
            carboxylic acid metabolic process 1074
              cellular amino acid metabolic process 350
                alpha-amino acid metabolic process 208
                  serine family amino acid metabolic process 46
                    glycine metabolic process 20
                      L-threonine catabolic process to glycine 5
                      glycine betaine biosynthetic process from glycine 0
                      glycine biosynthetic process + 4
                      glycine catabolic process + 6
                      protoporphyrinogen IX biosynthetic process from glycine 0
                      tetrapyrrole biosynthetic process from glycine and succinyl-CoA + 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.