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ONTOLOGY REPORT - ANNOTATIONS


Term:glycine metabolic process
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Accession:GO:0006544 term browser browse the term
Definition:The chemical reactions and pathways involving glycine, aminoethanoic acid.
Synonyms:exact_synonym: glycine metabolism


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glycine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAAT bile acid-CoA:amino acid N-acyltransferase IEA Ensembl GO_REF:0000107 NCBI chr11:58,102,057...58,116,750
Ensembl chr11:58,102,592...58,109,389
JBrowse link
G GLYAT glycine-N-acyltransferase IEA Ensembl GO_REF:0000107 NCBI chr18:37,689,076...37,715,614
Ensembl chr18:37,656,675...37,715,063
JBrowse link
G GNMT glycine N-methyltransferase ISO PMID:10756111 CAFA
RGD
PMID:10756111, PMID:18501206 RGD:12793006, RGD:7242952 NCBI chr12:11,500,363...11,503,075
Ensembl chr12:11,500,392...11,503,481
JBrowse link
G LOC483462 glycine N-phenylacetyltransferase-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:37,626,488...37,676,184
Ensembl chr18:37,656,675...37,715,063
JBrowse link
G LOC487740 trifunctional purine biosynthetic protein adenosine-3 ISO RGD PMID:4078017 RGD:2301990 NCBI chr31:29,032,399...29,063,706 JBrowse link
G LOC608055 D-3-phosphoglycerate dehydrogenase ISO (MGI:3835979|PMID:19114063) MGI PMID:19114063 MGI:3835979 NCBI chr17:57,385,063...57,410,439 JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:1,357,347...1,362,511
Ensembl chr10:1,356,706...1,362,305
JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC491550 probable low-specificity L-threonine aldolase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:2,909,869...2,917,921 JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr10:1,357,347...1,362,511
Ensembl chr10:1,356,706...1,362,305
JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHMT1 serine hydroxymethyltransferase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:1,357,347...1,362,511
Ensembl chr10:1,356,706...1,362,305
JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT2 alanine--glyoxylate aminotransferase 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:73,292,117...73,327,769
Ensembl chr 4:73,292,101...73,327,962
JBrowse link
G LOC100855679 serine--pyruvate aminotransferase, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:50,968,291...50,976,089 JBrowse link
G LOC607355 serine--pyruvate aminotransferase, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:50,717,157...50,725,297 JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMT aminomethyltransferase IEA InterPro GO_REF:0000002 NCBI chr20:39,815,449...39,820,907
Ensembl chr20:39,815,814...39,820,506
JBrowse link
G GLDC glycine decarboxylase IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr11:27,491,639...27,584,450
Ensembl chr11:27,414,834...27,584,450
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMT aminomethyltransferase ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr20:39,815,449...39,820,907
Ensembl chr20:39,815,814...39,820,506
JBrowse link
G GCSH glycine cleavage system protein H IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr 5:70,745,591...70,757,292
Ensembl chr 5:70,745,258...70,756,830
JBrowse link
G GLDC glycine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:27,491,639...27,584,450
Ensembl chr11:27,414,834...27,584,450
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16190
    metabolic process 10657
      primary metabolic process 9458
        cellular amino acid metabolic process 254
          alpha-amino acid metabolic process 180
            serine family amino acid metabolic process 37
              glycine metabolic process 15
                L-threonine catabolic process to glycine 0
                glycine betaine biosynthetic process from glycine 0
                glycine biosynthetic process + 6
                glycine catabolic process + 3
                protoporphyrinogen IX biosynthetic process from glycine 0
                tetrapyrrole biosynthetic process from glycine and succinyl-CoA + 0
Path 2
Term Annotations click to browse term
  biological_process 16190
    metabolic process 10657
      cellular metabolic process 9645
        organic acid metabolic process 865
          oxoacid metabolic process 830
            carboxylic acid metabolic process 814
              cellular amino acid metabolic process 254
                alpha-amino acid metabolic process 180
                  serine family amino acid metabolic process 37
                    glycine metabolic process 15
                      L-threonine catabolic process to glycine 0
                      glycine betaine biosynthetic process from glycine 0
                      glycine biosynthetic process + 6
                      glycine catabolic process + 3
                      protoporphyrinogen IX biosynthetic process from glycine 0
                      tetrapyrrole biosynthetic process from glycine and succinyl-CoA + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.