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ONTOLOGY REPORT - ANNOTATIONS


Term:glycine metabolic process
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Accession:GO:0006544 term browser browse the term
Definition:The chemical reactions and pathways involving glycine, aminoethanoic acid.
Synonyms:exact_synonym: glycine metabolism


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glycine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAAT bile acid-CoA:amino acid N-acyltransferase ISO (PMID:8034703) UniProtKB PMID:8034703 NCBI chr 9:72,568,002...72,593,179
Ensembl chr 9:100,563,040...100,586,189
JBrowse link
G GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:4078017 RGD:2301990 NCBI chr21:19,871,656...19,909,893
Ensembl chr21:33,244,457...33,282,331
JBrowse link
G GLYAT glycine-N-acyltransferase ISO (PMID:22475485) UniProtKB PMID:22475485 NCBI chr11:53,963,676...53,985,965
Ensembl chr11:57,423,438...57,438,213
JBrowse link
G GNMT glycine N-methyltransferase ISO PMID:10756111 CAFA
RGD
PMID:10756111, PMID:18501206 RGD:12793006, RGD:7242952 NCBI chr 6:42,550,631...42,554,385
Ensembl chr 6:43,846,560...43,849,679
JBrowse link
G PHGDH phosphoglycerate dehydrogenase ISO (MGI:3835979|PMID:19114063) MGI PMID:19114063 MGI:3835979 NCBI chr 1:82,803,155...82,835,465
Ensembl chr 1:117,800,843...117,833,462
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO (PMID:24698160) UniProtKB
RGD
PMID:15671219, PMID:24698160 RGD:1359815 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO (PMID:25619277), (PMID:29180469)
(PMID:19513116)
UniProtKB
BHF-UCL
RGD
PMID:10457370, PMID:15671219, PMID:19513116, PMID:25619277, PMID:29180469 RGD:1359815, RGD:2300380 NCBI chr12:31,692,451...31,697,727
Ensembl chr12:31,944,785...31,950,138
JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHMT1 serine hydroxymethyltransferase 1 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr12:31,692,451...31,697,727
Ensembl chr12:31,944,785...31,950,138
JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHMT1 serine hydroxymethyltransferase 1 ISO in the presence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO in the presence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr12:31,692,451...31,697,727
Ensembl chr12:31,944,785...31,950,138
JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase ISO (PMID:22198249) UniProtKB
RGD
PMID:12383475, PMID:22198249 RGD:1599457 NCBI chr2B:128,125,289...128,137,091
Ensembl chr2B:246,928,784...246,939,837
JBrowse link
G AGXT2 alanine--glyoxylate aminotransferase 2 ISO (PMID:20018850) BHF-UCL PMID:20018850 NCBI chr 5:75,322,351...75,373,261
Ensembl chr 5:80,601,554...80,652,575
JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLDC glycine decarboxylase ISO (PMID:28244183) UniProtKB PMID:28244183 NCBI chr 9:6,347,381...6,456,042
Ensembl chr 9:6,527,242...6,635,779
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMT aminomethyltransferase ISO (PMID:16051266) UniProtKB PMID:16051266 NCBI chr 3:49,344,590...49,350,383
Ensembl chr 3:50,589,193...50,594,968
JBrowse link
G GCSH glycine cleavage system protein H ISO RGD PMID:6402507 RGD:1598699 NCBI chr16:61,688,959...61,702,364 JBrowse link
G GLDC glycine decarboxylase ISO RGD PMID:6778858 RGD:1642728 NCBI chr 9:6,347,381...6,456,042
Ensembl chr 9:6,527,242...6,635,779
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12566
    metabolic process 7977
      primary metabolic process 7049
        cellular amino acid metabolic process 183
          alpha-amino acid metabolic process 136
            serine family amino acid metabolic process 30
              glycine metabolic process 12
                L-threonine catabolic process to glycine 0
                glycine betaine biosynthetic process from glycine 0
                glycine biosynthetic process + 4
                glycine catabolic process + 3
                protoporphyrinogen IX biosynthetic process from glycine 0
                tetrapyrrole biosynthetic process from glycine and succinyl-CoA + 0
Path 2
Term Annotations click to browse term
  biological_process 12566
    metabolic process 7977
      cellular metabolic process 7331
        organic acid metabolic process 684
          oxoacid metabolic process 657
            carboxylic acid metabolic process 646
              cellular amino acid metabolic process 183
                alpha-amino acid metabolic process 136
                  serine family amino acid metabolic process 30
                    glycine metabolic process 12
                      L-threonine catabolic process to glycine 0
                      glycine betaine biosynthetic process from glycine 0
                      glycine biosynthetic process + 4
                      glycine catabolic process + 3
                      protoporphyrinogen IX biosynthetic process from glycine 0
                      tetrapyrrole biosynthetic process from glycine and succinyl-CoA + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.