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ONTOLOGY REPORT - ANNOTATIONS


Term:aspartate metabolic process
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Accession:GO:0006531 term browser browse the term
Definition:The chemical reactions and pathways involving aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid.
Synonyms:exact_synonym: aspartate metabolism



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aspartate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adss adenylosuccinate synthase IDA RGD PMID:71897 RGD:5135533 NCBI chr13:89,769,240...89,799,577
Ensembl chr13:89,769,244...89,799,604
JBrowse link
G Adss1 adenylosuccinate synthase 1 IDA RGD PMID:3759987 RGD:5135303 NCBI chr 6:131,679,795...131,702,012
Ensembl chr 6:131,679,701...131,701,998
JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in ISO (PMID:7977368) RGD PMID:7977368 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO MGI:1856982 (MGI:5926996|PMID:28701731) RGD PMID:28701731 MGI:5926996 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Ddo D-aspartate oxidase acts_upstream_of_or_within ISO MGI:3625623 (MGI:3617951|PMID:16525061) RGD PMID:16525061 MGI:3617951 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IDA
ISS
GO_REF:0000024 UniProt
RGD
PMID:2837211 GO_REF:0000024, RGD:2289377 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in IMP
ISS
GO_REF:0000024 UniProt
RGD
PMID:12686151 GO_REF:0000024, RGD:2289396 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
JBrowse link
aspartate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:53641|PMID:4193185)
RGD PMID:4193185 PMID:21873635 MGI:53641, RGD:13792537 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:64,860,308...64,873,656
Ensembl chr16:64,860,704...64,866,162
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (MGI:53641|PMID:4193185) RGD PMID:4193185 MGI:53641 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase involved_in IBA
ISO
PMID:21873635
(PMID:9163533)
RGD PMID:9163533 PMID:21873635 RGD:13792537 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in ISO (PMID:2241899) RGD PMID:2241899 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in IBA
ISO
PMID:21873635
(PMID:2567216)
RGD PMID:2567216 PMID:21873635 RGD:13792537 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 acts_upstream_of_or_within ISO (MGI:53641|PMID:4193185) RGD PMID:4193185 MGI:53641 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (MGI:53641|PMID:4193185) RGD PMID:4193185 MGI:53641 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19504
    metabolic process 11814
      primary metabolic process 10544
        cellular amino acid metabolic process 272
          alpha-amino acid metabolic process 200
            aspartate family amino acid metabolic process 42
              aspartate metabolic process 8
                aspartate biosynthetic process 3
                aspartate catabolic process + 3
                glutamate catabolic process to aspartate 2
                nicotinamide nucleotide biosynthetic process from aspartate + 0
Path 2
Term Annotations click to browse term
  biological_process 19504
    metabolic process 11814
      cellular metabolic process 10733
        organic acid metabolic process 1012
          oxoacid metabolic process 980
            carboxylic acid metabolic process 961
              cellular amino acid metabolic process 272
                alpha-amino acid metabolic process 200
                  aspartate family amino acid metabolic process 42
                    aspartate metabolic process 8
                      aspartate biosynthetic process 3
                      aspartate catabolic process + 3
                      glutamate catabolic process to aspartate 2
                      nicotinamide nucleotide biosynthetic process from aspartate + 0
paths to the root