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ONTOLOGY REPORT - ANNOTATIONS


Term:arginine biosynthetic process
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Accession:GO:0006526 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
Synonyms:exact_synonym: arginine anabolism;   arginine biosynthesis;   arginine formation;   arginine synthesis
 xref: MetaCyc:ARGININE-SYN4-PWY;   MetaCyc:ARGSYN-PWY;   MetaCyc:ARGSYNBSUB-PWY



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arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase NAS RGD PMID:2789519 RGD:632221 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662
JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in IDA
IBA
IMP
ISO
IEA
PMID:21873635
PMID:19491403
(PMID:18473344), (PMID:27287393), (PMID:8792870)
GO_REF:0000041
RGD
UniProt
PMID:8792870 PMID:18473344 PMID:27287393 PMID:12470967 PMID:21873635 More... GO_REF:0000041, RGD:631755, RGD:13792537, RGD:12859071 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903
JBrowse link
G Nags N-acetylglutamate synthase involved_in IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr10:87,098,330...87,102,465
Ensembl chr10:87,098,330...87,102,465
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662
JBrowse link
G Otc ornithine transcarbamylase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918
JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:4830440|PMID:19284480) RGD PMID:19284480 MGI:4830440 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      primary metabolic process 10525
        cellular amino acid metabolic process 276
          cellular amino acid biosynthetic process 72
            alpha-amino acid biosynthetic process 66
              glutamine family amino acid biosynthetic process 17
                arginine biosynthetic process 5
                  arginine biosynthetic process via ornithine + 2
                  positive regulation of arginine biosynthetic process 0
                  regulation of arginine biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      cellular metabolic process 10675
        organic acid metabolic process 1009
          oxoacid metabolic process 978
            carboxylic acid metabolic process 962
              cellular amino acid metabolic process 276
                alpha-amino acid metabolic process 198
                  glutamine family amino acid metabolic process 74
                    arginine metabolic process 20
                      arginine biosynthetic process 5
                        arginine biosynthetic process via ornithine + 2
                        positive regulation of arginine biosynthetic process 0
                        regulation of arginine biosynthetic process + 1
paths to the root