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ONTOLOGY REPORT - ANNOTATIONS


Term:arginine biosynthetic process
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Accession:GO:0006526 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
Synonyms:exact_synonym: arginine anabolism;   arginine biosynthesis;   arginine formation;   arginine synthesis
 xref: MetaCyc:ARGININE-SYN4-PWY;   MetaCyc:ARGSYN-PWY;   MetaCyc:ARGSYNBSUB-PWY


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arginine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase NAS RGD PMID:2789519 RGD:632221 NCBI chr12:30,160,922...30,178,348
Ensembl chr12:30,165,694...30,178,341
JBrowse link
G Ass1 argininosuccinate synthase 1 IDA
IBA
ISO
IMP
IEA
PMID:21873635
(PMID:18473344), (PMID:27287393), (PMID:8792870)
PMID:19491403
GO_REF:0000041
RGD
UniProt
PMID:8792870, PMID:18473344, PMID:27287393, PMID:12470967, PMID:21873635, PMID:19491403 GO_REF:0000041, RGD:631755, RGD:13792537, RGD:12859071 NCBI chr 3:10,327,411...10,375,847
Ensembl chr 3:10,327,414...10,375,826
JBrowse link
G Nags N-acetylglutamate synthase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:90,084,607...90,089,693
Ensembl chr10:90,085,559...90,089,693
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr12:30,160,922...30,178,348
Ensembl chr12:30,165,694...30,178,341
JBrowse link
G Otc ornithine carbamoyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:13,524,804...13,601,074
Ensembl chr  X:13,524,607...13,601,069
JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:4830440|PMID:19284480) RGD PMID:19284480 MGI:MGI:4830440 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      primary metabolic process 10920
        cellular amino acid metabolic process 276
          cellular amino acid biosynthetic process 71
            alpha-amino acid biosynthetic process 66
              glutamine family amino acid biosynthetic process 18
                arginine biosynthetic process 5
                  arginine biosynthetic process via ornithine + 2
                  positive regulation of arginine biosynthetic process 0
                  regulation of arginine biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      cellular metabolic process 11085
        organic acid metabolic process 1095
          oxoacid metabolic process 1066
            carboxylic acid metabolic process 1009
              cellular amino acid metabolic process 276
                alpha-amino acid metabolic process 201
                  glutamine family amino acid metabolic process 75
                    arginine metabolic process 20
                      arginine biosynthetic process 5
                        arginine biosynthetic process via ornithine + 2
                        positive regulation of arginine biosynthetic process 0
                        regulation of arginine biosynthetic process + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.