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ONTOLOGY REPORT - ANNOTATIONS


Term:amino acid metabolic process
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Accession:GO:0006520 term browser browse the term
Definition:The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups.
Synonyms:exact_synonym: cellular amino acid metabolic process;   cellular amino acid metabolism
 related_synonym: amino acid and derivative metabolism;   cellular amino acid and derivative metabolic process
 alt_id: GO:0006519


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amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Accsl 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:3,988,469...4,000,309 JBrowse link
G Asl argininosuccinate lyase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12559843) Ensembl
MGI
PMID:12559843 GO_REF:0000107 NCBI chrNW_004624740:8,414,664...8,423,797
Ensembl chrNW_004624740:8,414,733...8,423,777
JBrowse link
G Asns asparagine synthetase (glutamine-hydrolyzing) ISO RGD PMID:7818476 RGD:1298553 NCBI chrNW_004624813:4,642,420...4,661,362
Ensembl chrNW_004624813:4,641,372...4,661,778
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (PMID:28701731) MGI PMID:28701731 NCBI chrNW_004624731:13,775,414...13,789,380
Ensembl chrNW_004624731:13,777,656...13,785,366
JBrowse link
G Ddc dopa decarboxylase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624740:3,674,727...3,732,058
Ensembl chrNW_004624740:3,674,609...3,732,676
JBrowse link
G Dio1 iodothyronine deiodinase 1 involved_in ISO (PMID:26305885) ARUK-UCL PMID:26305885 NCBI chrNW_004624934:583,302...597,982
Ensembl chrNW_004624934:584,294...597,908
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in ISO (PMID:14754911) UniProt PMID:14754911 NCBI chrNW_004624747:10,030,034...10,048,554 JBrowse link
G Ggt5 gamma-glutamyltransferase 5 involved_in ISO (PMID:1676842) UniProt PMID:1676842 NCBI chrNW_004624747:10,050,765...10,072,255
Ensembl chrNW_004624747:10,051,553...10,071,983
JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624841:133,267...171,324 JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in ISO
IEA
RGD
InterPro
PMID:14522984 GO_REF:0000002 RGD:1582383 NCBI chrNW_004624746:27,557,994...27,586,257
Ensembl chrNW_004624746:27,558,005...27,586,257
JBrowse link
G Hdc histidine decarboxylase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624731:9,835,585...9,856,743
Ensembl chrNW_004624731:9,835,596...9,856,743
JBrowse link
G Hgd homogentisate 1,2-dioxygenase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8188247) UniProt
MGI
PMID:8188247 GO_REF:0000117 NCBI chrNW_004624731:27,549,245...27,604,142
Ensembl chrNW_004624731:27,548,922...27,604,131
JBrowse link
G Kyat3 kynurenine aminotransferase 3 involved_in ISO (MGI:3835225|PMID:19029248) UniProt PMID:19029248 MGI:3835225 NCBI chrNW_004624742:8,599,862...8,659,110 JBrowse link
G LOC101696409 aminoacylase-1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:5,798,998...5,805,329
Ensembl chrNW_004624730:5,799,016...5,805,725
JBrowse link
G LOC101703542 probable low-specificity L-threonine aldolase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624801:7,747,659...7,753,305 JBrowse link
G Otc ornithine transcarbamylase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624762:17,038,223...17,104,853
Ensembl chrNW_004624762:17,038,223...17,104,965
JBrowse link
G Pm20d1 peptidase M20 domain containing 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624807:5,406,363...5,428,392
Ensembl chrNW_004624807:5,408,689...5,432,131
JBrowse link
G Sds serine dehydratase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624747:19,124,706...19,131,757
Ensembl chrNW_004624747:19,123,927...19,132,307
JBrowse link
G Slc16a2 solute carrier family 16 member 2 acts_upstream_of ISO (PMID:26305885) ARUK-UCL PMID:26305885 NCBI chrNW_004624836:6,454,988...6,670,980
Ensembl chrNW_004624836:6,455,190...6,668,643
JBrowse link
G Srr serine racemase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624786:4,969,742...4,988,874
Ensembl chrNW_004624786:4,977,574...4,988,945
JBrowse link
G Tat tyrosine aminotransferase ISO RGD PMID:12717026 RGD:1582407 NCBI chrNW_004624746:13,793,593...13,803,227
Ensembl chrNW_004624746:13,790,440...13,803,202
JBrowse link
'de novo' L-methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine--homocysteine S-methyltransferase involved_in ISO (PMID:10529246) UniProt PMID:10529246 NCBI chrNW_004624869:3,618,895...3,639,621
Ensembl chrNW_004624869:3,617,948...3,642,860
JBrowse link
'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624738:24,409,531...24,421,384
Ensembl chrNW_004624738:24,407,551...24,421,561
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624780:3,684,941...3,697,506
Ensembl chrNW_004624780:3,685,069...3,697,474
JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624771:11,900,020...11,942,943
Ensembl chrNW_004624771:11,899,624...11,942,806
JBrowse link
G Kynu kynureninase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624732:42,627,789...42,751,037
Ensembl chrNW_004624732:42,627,715...42,753,165
JBrowse link
4-hydroxyproline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 involved_in ISO (PMID:21998747) BHF-UCL PMID:21998747 NCBI chrNW_004624737:9,228,748...9,258,136
Ensembl chrNW_004624737:9,228,605...9,254,024
JBrowse link
alanyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars1 alanyl-tRNA synthetase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:16906134) RGD
TreeGrafter
MGI
InterPro
Ensembl
PMID:2040280 PMID:16906134 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2302982 NCBI chrNW_004624746:12,540,969...12,566,989
Ensembl chrNW_004624746:12,540,633...12,567,376
JBrowse link
G Aars2 alanyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624754:15,563,878...15,573,538
Ensembl chrNW_004624754:15,563,872...15,573,536
JBrowse link
G LOC101708260 alanyl-tRNA editing protein Aarsd1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624795:1,281,617...1,300,798
Ensembl chrNW_004624795:1,291,678...1,301,671
JBrowse link
alpha-amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624769:1,586,036...1,611,092
Ensembl chrNW_004624769:1,581,727...1,610,793
JBrowse link
amino acid activation for nonribosomal peptide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdh aminoadipate-semialdehyde dehydrogenase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24467666) Ensembl
TreeGrafter
MGI
PMID:24467666 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624761:13,026,875...13,063,511
Ensembl chrNW_004624761:13,026,213...13,064,708
JBrowse link
amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624737:6,921,619...6,970,113
Ensembl chrNW_004624737:6,921,222...6,970,488
JBrowse link
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624752:14,074,701...14,166,075
Ensembl chrNW_004624752:14,106,884...14,164,064
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624832:5,132,667...5,147,099
Ensembl chrNW_004624832:5,134,590...5,147,290
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211
JBrowse link
G Otc ornithine transcarbamylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624762:17,038,223...17,104,853
Ensembl chrNW_004624762:17,038,223...17,104,965
JBrowse link
amino acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enosf1 enolase superfamily member 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624770:11,150,044...11,179,506
Ensembl chrNW_004624770:11,150,438...11,179,497
JBrowse link
G Etfa electron transfer flavoprotein subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624894:1,874,859...1,935,587
Ensembl chrNW_004624894:1,874,695...1,936,120
JBrowse link
G Etfb electron transfer flavoprotein subunit beta involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624832:3,506,140...3,518,760
Ensembl chrNW_004624832:3,505,511...3,518,870
JBrowse link
ammonia assimilation cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12559843) Ensembl
MGI
PMID:12559843 GO_REF:0000107 NCBI chrNW_004624740:8,414,664...8,423,797
Ensembl chrNW_004624740:8,414,733...8,423,777
JBrowse link
G Glul glutamate-ammonia ligase ISO RGD PMID:28323 RGD:2301547 NCBI chrNW_004624771:2,608,779...2,618,130 JBrowse link
anthranilate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624738:24,409,531...24,421,384
Ensembl chrNW_004624738:24,407,551...24,421,561
JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624771:11,900,020...11,942,943
Ensembl chrNW_004624771:11,899,624...11,942,806
JBrowse link
G Kynu kynureninase involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624732:42,627,789...42,751,037
Ensembl chrNW_004624732:42,627,715...42,753,165
JBrowse link
arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA UniProt
Ensembl
GO_REF:0000041 GO_REF:0000107 NCBI chrNW_004624740:8,414,664...8,423,797
Ensembl chrNW_004624740:8,414,733...8,423,777
JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
UniProt
InterPro
PMID:12470967 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:631755 NCBI chrNW_004624760:5,180,095...5,221,677
Ensembl chrNW_004624760:5,180,095...5,221,732
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624740:8,414,664...8,423,797
Ensembl chrNW_004624740:8,414,733...8,423,777
JBrowse link
G Otc ornithine transcarbamylase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624762:17,038,223...17,104,853
Ensembl chrNW_004624762:17,038,223...17,104,965
JBrowse link
arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddah1 dimethylarginine dimethylaminohydrolase 1 involved_in ISO (PMID:24895913) BHF-UCL PMID:24895913 NCBI chrNW_004624742:12,027,450...12,170,003
Ensembl chrNW_004624742:12,026,248...12,170,147
JBrowse link
G Fah fumarylacetoacetate hydrolase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11209059) Ensembl
MGI
PMID:11209059 GO_REF:0000107 NCBI chrNW_004624941:1,039,389...1,056,568
Ensembl chrNW_004624941:1,039,429...1,056,568
JBrowse link
G Nos1 nitric oxide synthase 1 involved_in ISO PMID:1383204 BHF-UCL PMID:1383204 RGD:8553334 NCBI chrNW_004624747:15,940,614...16,118,051
Ensembl chrNW_004624747:16,003,969...16,113,165
JBrowse link
G Nos2 nitric oxide synthase 2 involved_in ISO (PMID:7504305)
(MGI:3807772|PMID:1383204)
BHF-UCL PMID:1383204 PMID:7504305 MGI:3807772 NCBI chrNW_004624786:491,944...530,427
Ensembl chrNW_004624786:489,311...528,271
JBrowse link
G Nos3 nitric oxide synthase 3 involved_in ISO (PMID:1378832), (PMID:7488039) BHF-UCL PMID:1378832 PMID:7488039 NCBI chrNW_004624800:5,600,215...5,619,020
Ensembl chrNW_004624800:5,600,212...5,619,004
JBrowse link
arginine catabolic process to glutamate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oat ornithine aminotransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:22,657,158...22,679,213
Ensembl chrNW_004624737:22,664,129...22,678,535
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg1 arginase 1 involved_in ISO
IEA
RGD
TreeGrafter
PMID:15753084 GO_REF:0000118 RGD:8693655 NCBI chrNW_004624753:5,737,720...5,749,313
Ensembl chrNW_004624753:5,737,237...5,752,966
JBrowse link
G Arg2 arginase 2 involved_in ISO
IEA
RGD
TreeGrafter
PMID:15753084 GO_REF:0000118 RGD:8693655 NCBI chrNW_004624734:33,321,161...33,352,306
Ensembl chrNW_004624734:33,321,295...33,352,277
JBrowse link
arginine catabolic process to proline via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oat ornithine aminotransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:22,657,158...22,679,213
Ensembl chrNW_004624737:22,664,129...22,678,535
JBrowse link
arginine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase (putative) involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624764:1,839,667...1,853,344
Ensembl chrNW_004624764:1,843,227...1,853,350
JBrowse link
G Arg1 arginase 1 involved_in ISO
IEA
RGD
UniProt
InterPro
PMID:4062872 GO_REF:0000002 GO_REF:0000043 RGD:2300098 NCBI chrNW_004624753:5,737,720...5,749,313
Ensembl chrNW_004624753:5,737,237...5,752,966
JBrowse link
G Arg2 arginase 2 involved_in ISO
IEA
RGD
InterPro
UniProt
PMID:16537391 GO_REF:0000002 GO_REF:0000043 RGD:1582129 NCBI chrNW_004624734:33,321,161...33,352,306
Ensembl chrNW_004624734:33,321,295...33,352,277
JBrowse link
G Asl argininosuccinate lyase involved_in ISO (PMID:9045711) UniProt PMID:9045711 NCBI chrNW_004624740:8,414,664...8,423,797
Ensembl chrNW_004624740:8,414,733...8,423,777
JBrowse link
G Ddah1 dimethylarginine dimethylaminohydrolase 1 ISO RGD PMID:17322279 RGD:1625578 NCBI chrNW_004624742:12,027,450...12,170,003
Ensembl chrNW_004624742:12,026,248...12,170,147
JBrowse link
G Ddah2 DDAH family member 2, ADMA-independent involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:24,482,818...24,486,146
Ensembl chrNW_004624754:24,482,114...24,489,911
JBrowse link
G Slc39a8 solute carrier family 39 member 8 acts_upstream_of ISO (MGI:5912781|PMID:28481222) UniProt PMID:28481222 MGI:5912781 NCBI chrNW_004624830:5,514,595...5,573,250
Ensembl chrNW_004624830:5,514,780...5,574,894
JBrowse link
argininosuccinate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase ISO RGD PMID:4062872 PMID:8586639 RGD:1599287 RGD:2300098 NCBI chrNW_004624740:8,414,664...8,423,797
Ensembl chrNW_004624740:8,414,733...8,423,777
JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:4062872 GO_REF:0000107 GO_REF:0000118 RGD:2300098 NCBI chrNW_004624760:5,180,095...5,221,677
Ensembl chrNW_004624760:5,180,095...5,221,732
JBrowse link
arginyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dalrd3 DALR anticodon binding domain containing 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:3,063,241...3,066,253
Ensembl chrNW_004624730:3,063,245...3,066,453
JBrowse link
G Rars1 arginyl-tRNA synthetase 1 involved_in ISO
IEA
RGD
TreeGrafter
InterPro
PMID:7082655 GO_REF:0000002 GO_REF:0000118 RGD:2303394 NCBI chrNW_004624733:21,487,847...21,535,487
Ensembl chrNW_004624733:21,487,847...21,535,797
JBrowse link
G Rars2 arginyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624799:6,728,967...6,804,846
Ensembl chrNW_004624799:6,728,610...6,803,716
JBrowse link
aromatic amino acid family catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tat tyrosine aminotransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624746:13,793,593...13,803,227
Ensembl chrNW_004624746:13,790,440...13,803,202
JBrowse link
aromatic amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fah fumarylacetoacetate hydrolase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624941:1,039,389...1,056,568
Ensembl chrNW_004624941:1,039,429...1,056,568
JBrowse link
G Gstz1 glutathione S-transferase zeta 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624734:24,575,009...24,595,944
Ensembl chrNW_004624734:24,575,540...24,595,784
JBrowse link
G Hpd 4-hydroxyphenylpyruvate dioxygenase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624747:22,209,191...22,217,665
Ensembl chrNW_004624747:22,209,009...22,217,841
JBrowse link
G Hpdl 4-hydroxyphenylpyruvate dioxygenase like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624906:1,235,307...1,238,381
Ensembl chrNW_004624906:1,236,450...1,237,565
JBrowse link
G Il4i1 interleukin 4 induced 1 acts_upstream_of_or_within ISO (PMID:15383589) MGI PMID:15383589 NCBI chrNW_004624832:4,404,818...4,444,551
Ensembl chrNW_004624832:4,431,903...4,444,651
JBrowse link
G Th tyrosine hydroxylase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624767:15,003,073...15,010,207
Ensembl chrNW_004624767:15,003,092...15,010,154
JBrowse link
G Tph1 tryptophan hydroxylase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624766:9,629,951...9,687,772
Ensembl chrNW_004624766:9,629,849...9,668,393
JBrowse link
G Tph2 tryptophan hydroxylase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624750:25,702,597...25,801,938
Ensembl chrNW_004624750:25,702,630...25,801,618
JBrowse link
asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:2573597) MGI
TreeGrafter
InterPro
UniProt
RGD
PMID:2573597 PMID:2887559 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 RGD:2316002 NCBI chrNW_004624813:4,642,420...4,661,362
Ensembl chrNW_004624813:4,641,372...4,661,778
JBrowse link
G LOC101726470 asparagine synthetase domain-containing protein 1-like involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624805:363,178...383,865 JBrowse link
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asrgl1 asparaginase and isoaspartyl peptidase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
PMID:12753071 MGI
TreeGrafter
PMID:12753071 GO_REF:0000118 RGD:1299508 NCBI chrNW_004624926:1,009,865...1,018,538
Ensembl chrNW_004624926:1,010,069...1,020,159
JBrowse link
asparagine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspg asparaginase involved_in ISO PMID:9575212 UniProt PMID:9575212 RGD:1299414 NCBI chrNW_004624734:932,877...950,509
Ensembl chrNW_004624734:931,946...950,553
JBrowse link
G Nit2 nitrilase family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624789:13,754,573...13,778,368
Ensembl chrNW_004624789:13,754,605...13,778,366
JBrowse link
asparaginyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nars1 asparaginyl-tRNA synthetase 1 involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624792:3,109,779...3,128,949
Ensembl chrNW_004624792:3,109,779...3,128,957
JBrowse link
aspartate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 acts_upstream_of_or_within ISO (PMID:4193185) MGI PMID:4193185 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) MGI PMID:4193185 NCBI chrNW_004624746:27,557,994...27,586,257
Ensembl chrNW_004624746:27,558,005...27,586,257
JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase involved_in ISO (PMID:9163533) UniProt PMID:9163533 NCBI chrNW_004624916:1,488,912...1,522,175
Ensembl chrNW_004624916:1,490,226...1,522,212
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in ISO (PMID:2241899) UniProt PMID:2241899 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:27,557,994...27,586,257
Ensembl chrNW_004624746:27,558,005...27,586,257
JBrowse link
aspartate family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspg asparaginase involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624734:932,877...950,509
Ensembl chrNW_004624734:931,946...950,553
JBrowse link
aspartate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adss1 adenylosuccinate synthase 1 ISO RGD PMID:3759987 RGD:5135303 NCBI chrNW_004624734:536,109...552,406
Ensembl chrNW_004624734:535,101...552,535
JBrowse link
G Adss2 adenylosuccinate synthase 2 ISO RGD PMID:71897 RGD:5135533 NCBI chrNW_004624771:15,059,845...15,097,518
Ensembl chrNW_004624771:15,059,876...15,097,518
JBrowse link
G Aspa aspartoacylase involved_in ISO (PMID:28077719) MGI PMID:28077719 NCBI chrNW_004624786:6,168,785...6,202,223
Ensembl chrNW_004624786:6,168,721...6,188,312
JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:5,180,095...5,221,677
Ensembl chrNW_004624760:5,180,095...5,221,732
JBrowse link
G Ddo D-aspartate oxidase acts_upstream_of_or_within ISO (PMID:16525061) MGI PMID:16525061 NCBI chrNW_004624916:1,488,912...1,522,175
Ensembl chrNW_004624916:1,490,226...1,522,212
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO RGD PMID:2837211 RGD:2289377 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO RGD PMID:12686151 RGD:2289396 NCBI chrNW_004624746:27,557,994...27,586,257
Ensembl chrNW_004624746:27,558,005...27,586,257
JBrowse link
G Nat8l N-acetyltransferase 8 like involved_in ISO (PMID:28077719) MGI PMID:28077719 NCBI chrNW_004624755:25,465,154...25,472,906
Ensembl chrNW_004624755:25,468,658...25,472,837
JBrowse link
aspartyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dars1 aspartyl-tRNA synthetase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624732:35,266,830...35,337,610
Ensembl chrNW_004624732:35,266,830...35,337,645
JBrowse link
G Dars2 aspartyl-tRNA synthetase 2, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624771:8,003,208...8,033,981
Ensembl chrNW_004624771:8,003,295...8,034,043
JBrowse link
beta-alanine biosynthetic process via 3-ureidopropionate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:9,911,323...9,940,770
Ensembl chrNW_004624747:9,911,448...9,940,537
JBrowse link
beta-alanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family member A1 ISO RGD PMID:2768248 RGD:1599052 NCBI chrNW_004624734:27,499,376...27,525,783
Ensembl chrNW_004624734:27,499,411...27,524,419
JBrowse link
beta-alanine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdh aminoadipate-semialdehyde dehydrogenase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24467666) Ensembl
MGI
PMID:24467666 GO_REF:0000107 NCBI chrNW_004624761:13,026,875...13,063,511
Ensembl chrNW_004624761:13,026,213...13,064,708
JBrowse link
G Dpys dihydropyrimidinase ISO RGD PMID:8307005 RGD:1624990 NCBI chrNW_004624763:20,618,515...20,680,790
Ensembl chrNW_004624763:20,620,380...20,680,782
JBrowse link
G Upb1 beta-ureidopropionase 1 ISO RGD PMID:7626590 RGD:1624989 NCBI chrNW_004624747:9,911,323...9,940,770
Ensembl chrNW_004624747:9,911,448...9,940,537
JBrowse link
branched-chain amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624752:14,074,701...14,166,075
Ensembl chrNW_004624752:14,106,884...14,164,064
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624832:5,132,667...5,147,099
Ensembl chrNW_004624832:5,134,590...5,147,290
JBrowse link
branched-chain amino acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 acts_upstream_of_or_within ISO (PMID:14755340) MGI PMID:14755340 NCBI chrNW_004624752:14,074,701...14,166,075
Ensembl chrNW_004624752:14,106,884...14,164,064
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 acts_upstream_of_or_within ISO (PMID:14755340) RGD
MGI
PMID:11733007 PMID:14755340 RGD:1582175 NCBI chrNW_004624832:5,132,667...5,147,099
Ensembl chrNW_004624832:5,134,590...5,147,290
JBrowse link
G Bckdha branched chain keto acid dehydrogenase E1 subunit alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624907:203,819...225,334
Ensembl chrNW_004624907:203,992...228,488
JBrowse link
G Bckdhb branched chain keto acid dehydrogenase E1 subunit beta involved_in ISO (PMID:10745006), (PMID:2022752)
(PMID:3593587)
HGNC-UCL
ComplexPortal
PMID:2022752 PMID:3593587 PMID:10745006 NCBI chrNW_004624799:14,182,951...14,368,568
Ensembl chrNW_004624799:14,182,863...14,368,618
JBrowse link
G Bckdk branched chain keto acid dehydrogenase kinase involved_in ISO PMID:1377677 HGNC-UCL PMID:1377677 RGD:68712 NCBI chrNW_004624782:14,150,019...14,154,124
Ensembl chrNW_004624782:14,150,024...14,154,124
JBrowse link
G Dbt dihydrolipoamide branched chain transacylase E2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624857:3,056,799...3,138,430
Ensembl chrNW_004624857:3,056,781...3,138,396
JBrowse link
G Dld dihydrolipoamide dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624739:21,842,897...21,873,334
Ensembl chrNW_004624739:21,846,733...21,873,700
JBrowse link
G Hibadh 3-hydroxyisobutyrate dehydrogenase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624739:2,965,096...3,077,810
Ensembl chrNW_004624739:2,964,982...3,078,074
JBrowse link
G Hibch 3-hydroxyisobutyryl-CoA hydrolase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624854:5,705,067...5,770,145
Ensembl chrNW_004624854:5,705,044...5,769,628
JBrowse link
G Ppm1k protein phosphatase, Mg2+/Mn2+ dependent 1K involved_in ISO (PMID:29779826) UniProt PMID:29779826 NCBI chrNW_004624757:15,817,351...15,850,652
Ensembl chrNW_004624757:15,817,375...15,850,800
JBrowse link
G Slc25a44 solute carrier family 25 member 44 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624885:1,500,837...1,517,481
Ensembl chrNW_004624885:1,500,255...1,517,481
JBrowse link
branched-chain amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624752:14,074,701...14,166,075
Ensembl chrNW_004624752:14,106,884...14,164,064
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20237068) InterPro
MGI
PMID:20237068 GO_REF:0000002 NCBI chrNW_004624832:5,132,667...5,147,099
Ensembl chrNW_004624832:5,134,590...5,147,290
JBrowse link
carnosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carns1 carnosine synthase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20097752), (PMID:24891507) MGI
TreeGrafter
InterPro
PMID:20097752 PMID:24891507 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624767:19,097,963...19,108,078
Ensembl chrNW_004624767:19,097,944...19,107,665
JBrowse link
carnosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carnmt1 carnosine N-methyltransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624811:2,598,329...2,639,650
Ensembl chrNW_004624811:2,599,907...2,639,413
JBrowse link
citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 involved_in ISO (PMID:11092761), (PMID:26297558) UniProt PMID:11092761 PMID:26297558 NCBI chrNW_004624737:6,921,619...6,970,113
Ensembl chrNW_004624737:6,921,222...6,970,488
JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA
RGD
TreeGrafter
PMID:7053379 GO_REF:0000118 RGD:10755426 NCBI chrNW_004624738:9,318,213...9,340,765
Ensembl chrNW_004624738:9,318,232...9,340,925
JBrowse link
G Otc ornithine transcarbamylase involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:9472964 GO_REF:0000107 GO_REF:0000118 RGD:4144071 NCBI chrNW_004624762:17,038,223...17,104,853
Ensembl chrNW_004624762:17,038,223...17,104,965
JBrowse link
citrulline metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ass1 argininosuccinate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:5,180,095...5,221,677
Ensembl chrNW_004624760:5,180,095...5,221,732
JBrowse link
G Ddah1 dimethylarginine dimethylaminohydrolase 1 involved_in ISO (PMID:19663506) UniProt PMID:19663506 NCBI chrNW_004624742:12,027,450...12,170,003
Ensembl chrNW_004624742:12,026,248...12,170,147
JBrowse link
G Ddah2 DDAH family member 2, ADMA-independent NOT|involved_in ISO
IEA
(PMID:21493890), (PMID:37296100) UniProt
TreeGrafter
PMID:21493890 PMID:37296100 GO_REF:0000118 NCBI chrNW_004624754:24,482,818...24,486,146
Ensembl chrNW_004624754:24,482,114...24,489,911
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (PMID:17213233) MGI PMID:17213233 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333
JBrowse link
cysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15030387) UniProt
MGI
Ensembl
PMID:15030387 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Cth cystathionine gamma-lyase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000043 NCBI chrNW_004624742:25,619,261...25,642,477
Ensembl chrNW_004624742:25,619,277...25,642,875
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in ISO (MGI:5294309|PMID:12468440) UniProt PMID:12468440 MGI:5294309 NCBI chrNW_004624747:10,030,034...10,048,554 JBrowse link
cysteine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
cysteine biosynthetic process via cystathionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Cth cystathionine gamma-lyase involved_in ISO (PMID:19428278) BHF-UCL PMID:19428278 NCBI chrNW_004624742:25,619,261...25,642,477
Ensembl chrNW_004624742:25,619,277...25,642,875
JBrowse link
cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:749,046...793,654
Ensembl chrNW_004624850:749,050...793,959
JBrowse link
G Gclm glutamate-cysteine ligase modifier subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12384496) Ensembl
MGI
PMID:12384496 GO_REF:0000107 NCBI chrNW_004624742:3,713,275...3,746,219
Ensembl chrNW_004624742:3,713,250...3,743,290
JBrowse link
cysteinyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cars1 cysteinyl-tRNA synthetase 1 involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624767:15,749,862...15,809,985
Ensembl chrNW_004624767:15,749,862...15,809,970
JBrowse link
G Cars2 cysteinyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624793:2,126,304...2,148,619
Ensembl chrNW_004624793:2,130,608...2,148,519
JBrowse link
D-alanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:12,094,658...12,117,000
Ensembl chrNW_004624747:12,105,133...12,116,604
JBrowse link
D-amino acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase involved_in ISO (PMID:29274788)
(PMID:16751595), (PMID:2572224)
UniProt PMID:2572224 PMID:16751595 PMID:29274788 NCBI chrNW_004624747:12,094,658...12,117,000
Ensembl chrNW_004624747:12,105,133...12,116,604
JBrowse link
G Ddo D-aspartate oxidase involved_in ISO (PMID:20603179), (PMID:25747990), (PMID:28629864), (PMID:33650155)
(MGI:7482880|PMID:37189369), (MGI:7565916|PMID:26058797)
(MGI:5442503|PMID:20603179), (MGI:7565899|PMID:25747990), (MGI:7565904|PMID:32553892)
PMID:29292239
(PMID:16751595), (PMID:17234685)
UniProt PMID:16751595 PMID:17234685 PMID:20603179 PMID:25747990 PMID:26058797 More... MGI:5442503 MGI:7482880 MGI:7565899 MGI:7565904 MGI:7565916 RGD:401901226 RGD:401901239 NCBI chrNW_004624916:1,488,912...1,522,175
Ensembl chrNW_004624916:1,490,226...1,522,212
JBrowse link
D-amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624747:12,094,658...12,117,000
Ensembl chrNW_004624747:12,105,133...12,116,604
JBrowse link
D-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srr serine racemase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10557334), (PMID:11054547), (PMID:12021263), (PMID:15710237) MGI
TreeGrafter
PMID:10557334 PMID:11054547 PMID:12021263 PMID:15710237 GO_REF:0000118 NCBI chrNW_004624786:4,969,742...4,988,874
Ensembl chrNW_004624786:4,977,574...4,988,945
JBrowse link
D-serine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:12,094,658...12,117,000
Ensembl chrNW_004624747:12,105,133...12,116,604
JBrowse link
D-serine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase involved_in ISO (PMID:21679769) UniProt PMID:21679769 NCBI chrNW_004624747:12,094,658...12,117,000
Ensembl chrNW_004624747:12,105,133...12,116,604
JBrowse link
G Srr serine racemase involved_in ISO (PMID:20106978) UniProt PMID:20106978 RGD:8554326 NCBI chrNW_004624786:4,969,742...4,988,874
Ensembl chrNW_004624786:4,977,574...4,988,945
JBrowse link
dopamine biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Th tyrosine hydroxylase involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:7592982), (PMID:7715703)
(PMID:9520487)
RGD
TreeGrafter
MGI
PMID:2427363 PMID:7592982 PMID:7715703 PMID:9520487 PMID:19584816 GO_REF:0000118 RGD:1580046 RGD:5130972 NCBI chrNW_004624767:15,003,073...15,010,207
Ensembl chrNW_004624767:15,003,092...15,010,154
JBrowse link
gamma-aminobutyric acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO RGD PMID:19540876 RGD:9588538 NCBI chrNW_004624824:6,112,644...6,202,936
Ensembl chrNW_004624824:6,141,213...6,202,936
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 involved_in ISO (MGI:5697738|PMID:26430123) UniProt PMID:26430123 MGI:5697738 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855
JBrowse link
G Gad1 glutamate decarboxylase 1 involved_in ISO
IEA
RGD
TreeGrafter
PMID:17712632 GO_REF:0000118 RGD:6480258 NCBI chrNW_004624787:8,308,759...8,345,929
Ensembl chrNW_004624787:8,308,759...8,347,686
JBrowse link
G Gad2 glutamate decarboxylase 2 ISO RGD PMID:22108820 RGD:401900601 NCBI chrNW_004624796:2,700,443...2,771,757
Ensembl chrNW_004624796:2,703,614...2,771,555
JBrowse link
G Slc1a3 solute carrier family 1 member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15305132) Ensembl
MGI
PMID:15305132 GO_REF:0000107 NCBI chrNW_004624759:18,325,272...18,400,447
Ensembl chrNW_004624759:18,325,147...18,400,431
JBrowse link
G Slc38a1 solute carrier family 38 member 1 involved_in ISO (MGI:6795362|PMID:32668809) UniProt PMID:32668809 MGI:6795362 NCBI chrNW_004624816:5,988,625...6,025,987
Ensembl chrNW_004624816:5,989,601...6,025,987
JBrowse link
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:6,112,644...6,202,936
Ensembl chrNW_004624824:6,141,213...6,202,936
JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family member A1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11544478), (PMID:15262267) UniProt
TreeGrafter
MGI
InterPro
PMID:11544478 PMID:15262267 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624756:2,464,912...2,500,773
Ensembl chrNW_004624756:2,464,899...2,501,130
JBrowse link
gamma-aminobutyric acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624824:6,112,644...6,202,936
Ensembl chrNW_004624824:6,141,213...6,202,936
JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family member A1 acts_upstream_of_or_within ISO (PMID:12067239), (PMID:16504488), (PMID:16647690) MGI PMID:12067239 PMID:16504488 PMID:16647690 NCBI chrNW_004624756:2,464,912...2,500,773
Ensembl chrNW_004624756:2,464,899...2,501,130
JBrowse link
G Phgdh phosphoglycerate dehydrogenase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19114063) Ensembl
MGI
PMID:19114063 GO_REF:0000107 NCBI chrNW_004624772:15,473,609...15,514,392
Ensembl chrNW_004624772:15,473,221...15,514,637
JBrowse link
glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624854:5,106,419...5,202,445
Ensembl chrNW_004624854:5,108,566...5,202,240
JBrowse link
G Gls2 glutaminase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:11,545,196...11,559,851
Ensembl chrNW_004624802:11,545,142...11,561,942
JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:11032875) BHF-UCL PMID:11032875 NCBI chrNW_004624841:133,267...171,324 JBrowse link
G Slc25a12 solute carrier family 25 member 12 ISO RGD PMID:19764902 RGD:13628741 NCBI chrNW_004624787:9,187,450...9,319,684
Ensembl chrNW_004624787:9,184,514...9,320,060
JBrowse link
glutamate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gad1 glutamate decarboxylase 1 involved_in ISO (PMID:17384644) UniProt PMID:17384644 NCBI chrNW_004624787:8,308,759...8,345,929
Ensembl chrNW_004624787:8,308,759...8,347,686
JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624841:133,267...171,324 JBrowse link
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 acts_upstream_of_or_within ISO (PMID:4193185) MGI PMID:4193185 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) MGI PMID:4193185 NCBI chrNW_004624746:27,557,994...27,586,257
Ensembl chrNW_004624746:27,558,005...27,586,257
JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 acts_upstream_of_or_within ISO (PMID:4193185) MGI PMID:4193185 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) MGI PMID:4193185 NCBI chrNW_004624746:27,557,994...27,586,257
Ensembl chrNW_004624746:27,558,005...27,586,257
JBrowse link
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adhfe1 alcohol dehydrogenase iron containing 1 involved_in ISO (PMID:16435184) UniProt PMID:16435184 NCBI chrNW_004624744:24,883,104...24,913,885
Ensembl chrNW_004624744:24,880,010...24,913,873
JBrowse link
glutamate decarboxylation to succinate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gad2 glutamate decarboxylase 2 ISO RGD PMID:8999827 RGD:1625237 NCBI chrNW_004624796:2,700,443...2,771,757
Ensembl chrNW_004624796:2,703,614...2,771,555
JBrowse link
glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in ISO (PMID:18620547) UniProt PMID:18620547 NCBI chrNW_004624769:1,586,036...1,611,092
Ensembl chrNW_004624769:1,581,727...1,610,793
JBrowse link
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 involved_in ISO (PMID:11092761) UniProt PMID:11092761 NCBI chrNW_004624737:6,921,619...6,970,113
Ensembl chrNW_004624737:6,921,222...6,970,488
JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family member A1 acts_upstream_of_or_within ISO (PMID:17854388) MGI PMID:17854388 NCBI chrNW_004624756:2,464,912...2,500,773
Ensembl chrNW_004624756:2,464,899...2,501,130
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (PMID:28701731) MGI PMID:28701731 NCBI chrNW_004624731:13,775,414...13,789,380
Ensembl chrNW_004624731:13,777,656...13,785,366
JBrowse link
G Dglucy D-glutamate cyclase involved_in ISO (MGI:5901965|PMID:28266638) UniProt PMID:28266638 MGI:5901965 NCBI chrNW_004624734:11,374,116...11,423,840
Ensembl chrNW_004624734:11,375,180...11,422,068
JBrowse link
G Fpgs folylpolyglutamate synthase involved_in ISO (PMID:3619447) BHF-UCL PMID:3619447 NCBI chrNW_004624760:7,735,606...7,754,750
Ensembl chrNW_004624760:7,735,613...7,754,994
JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:749,046...793,654
Ensembl chrNW_004624850:749,050...793,959
JBrowse link
G Gclm glutamate-cysteine ligase modifier subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624742:3,713,275...3,746,219
Ensembl chrNW_004624742:3,713,250...3,743,290
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in ISO (PMID:21447318), (PMID:24047895) UniProt PMID:21447318 PMID:24047895 NCBI chrNW_004624747:10,030,034...10,048,554 JBrowse link
G Glul glutamate-ammonia ligase ISO RGD PMID:4403443 RGD:2301548 NCBI chrNW_004624771:2,608,779...2,618,130 JBrowse link
G Mthfs methenyltetrahydrofolate synthetase involved_in ISO (PMID:12764149) BHF-UCL PMID:12764149 NCBI chrNW_004624941:856,196...894,057 JBrowse link
G Nags N-acetylglutamate synthase acts_upstream_of_or_within ISO (PMID:12049647) MGI PMID:12049647 NCBI chrNW_004624795:875,463...879,283
Ensembl chrNW_004624795:875,750...879,256
JBrowse link
G Tat tyrosine aminotransferase involved_in ISO (PMID:7999802)
(MGI:5430853|PMID:21153519)
UniProt PMID:7999802 PMID:21153519 MGI:5430853 NCBI chrNW_004624746:13,793,593...13,803,227
Ensembl chrNW_004624746:13,790,440...13,803,202
JBrowse link
glutamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glul glutamate-ammonia ligase involved_in ISO
IEA
RGD
TreeGrafter
InterPro
PMID:28323 PMID:4403443 GO_REF:0000002 GO_REF:0000118 RGD:2301547 RGD:2301548 NCBI chrNW_004624771:2,608,779...2,618,130 JBrowse link
G Lgsn lengsin, lens protein with glutamine synthetase domain involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624753:21,645,389...21,694,557
Ensembl chrNW_004624753:21,650,655...21,679,764
JBrowse link
G LOC101696542 glutamine synthetase involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624732:4,017,545...4,018,777 JBrowse link
glutamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:16641247) MGI
TreeGrafter
PMID:16641247 GO_REF:0000118 NCBI chrNW_004624854:5,106,419...5,202,445
Ensembl chrNW_004624854:5,108,566...5,202,240
JBrowse link
G Gls2 glutaminase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:11,545,196...11,559,851
Ensembl chrNW_004624802:11,545,142...11,561,942
JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase ISO RGD PMID:8463258 RGD:633710 NCBI chrNW_004624761:12,980,508...13,017,818
Ensembl chrNW_004624761:12,980,513...13,019,011
JBrowse link
glutamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adss1 adenylosuccinate synthase 1 ISO RGD PMID:12522136 RGD:5135508 NCBI chrNW_004624734:536,109...552,406
Ensembl chrNW_004624734:535,101...552,535
JBrowse link
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624813:4,642,420...4,661,362
Ensembl chrNW_004624813:4,641,372...4,661,778
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (PMID:28701731) MGI PMID:28701731 NCBI chrNW_004624731:13,775,414...13,789,380
Ensembl chrNW_004624731:13,777,656...13,785,366
JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
InterPro
PMID:2474281 PMID:2803258 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 RGD:10755425 RGD:5132588 NCBI chrNW_004624738:9,318,213...9,340,765
Ensembl chrNW_004624738:9,318,232...9,340,925
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624765:5,527,029...5,652,343
Ensembl chrNW_004624765:5,528,112...5,651,415
JBrowse link
G Ctps1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004624892:376,800...421,850 JBrowse link
G Ctps2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004624829:1,373,568...1,438,052
Ensembl chrNW_004624829:1,386,544...1,438,052
JBrowse link
G Gfpt1 glutamine--fructose-6-phosphate transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624762:3,943,074...4,016,090
Ensembl chrNW_004624762:3,942,972...4,010,498
JBrowse link
G Ggh gamma-glutamyl hydrolase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004624744:28,752,785...28,786,293
Ensembl chrNW_004624744:28,752,909...28,785,661
JBrowse link
G Gls glutaminase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624854:5,106,419...5,202,445
Ensembl chrNW_004624854:5,108,566...5,202,240
JBrowse link
G Gls2 glutaminase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624802:11,545,196...11,559,851
Ensembl chrNW_004624802:11,545,142...11,561,942
JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (MGI:5499916|PMID:23663782) UniProt PMID:23663782 MGI:5499916 NCBI chrNW_004624841:133,267...171,324 JBrowse link
G Gmps guanine monophosphate synthase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004624730:33,459,059...33,535,593
Ensembl chrNW_004624730:33,460,566...33,535,593
JBrowse link
G Mecp2 methyl-CpG binding protein 2 acts_upstream_of_or_within ISO (PMID:17237885) MGI PMID:17237885 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246
JBrowse link
G Nit2 nitrilase family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624789:13,754,573...13,778,368
Ensembl chrNW_004624789:13,754,605...13,778,366
JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase involved_in ISO
IEA
RGD
UniProt
PMID:3436958 GO_REF:0000043 GO_REF:0000104 RGD:1599004 NCBI chrNW_004624786:10,831,287...10,854,526
Ensembl chrNW_004624786:10,836,943...10,853,274
JBrowse link
G Phgdh phosphoglycerate dehydrogenase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19114063) Ensembl
MGI
PMID:19114063 GO_REF:0000107 NCBI chrNW_004624772:15,473,609...15,514,392
Ensembl chrNW_004624772:15,473,221...15,514,637
JBrowse link
G Sirt4 sirtuin 4 involved_in ISO (MGI:5490691|PMID:23562301), (MGI:5499916|PMID:23663782) UniProt PMID:23562301 PMID:23663782 MGI:5490691 MGI:5499916 NCBI chrNW_004624747:13,329,662...13,352,151
Ensembl chrNW_004624747:13,335,442...13,352,201
JBrowse link
G Slc38a1 solute carrier family 38 member 1 involved_in ISO PMID:10660562 UniProt PMID:10660562 RGD:68922 NCBI chrNW_004624816:5,988,625...6,025,987
Ensembl chrNW_004624816:5,989,601...6,025,987
JBrowse link
G Ucp2 uncoupling protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624817:3,067,358...3,075,045
Ensembl chrNW_004624817:3,067,320...3,075,043
JBrowse link
glutaminyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lars1 leucyl-tRNA synthetase 1 involved_in ISO (PMID:26869582) UniProt PMID:26869582 NCBI chrNW_004624774:5,609,623...5,673,815
Ensembl chrNW_004624774:5,609,623...5,673,791
JBrowse link
G Qars1 glutaminyl-tRNA synthetase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624730:3,123,877...3,130,787
Ensembl chrNW_004624730:3,120,958...3,130,757
JBrowse link
glutaminyl-tRNAGln biosynthesis via transamidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gatb glutamyl-tRNA amidotransferase subunit B involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624858:3,121,443...3,208,853
Ensembl chrNW_004624858:3,121,443...3,208,904
JBrowse link
G Gatc glutamyl-tRNA amidotransferase subunit C involved_in IEA UniProt
TreeGrafter
GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624747:13,210,001...13,220,434
Ensembl chrNW_004624747:13,210,282...13,220,328
JBrowse link
G Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 involved_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624780:15,629,167...15,664,787
Ensembl chrNW_004624780:15,628,678...15,664,651
JBrowse link
glutamyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624782:8,698,743...8,719,064
Ensembl chrNW_004624782:8,700,195...8,719,911
JBrowse link
G Eprs1 glutamyl-prolyl-tRNA synthetase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624835:3,635,829...3,695,875
Ensembl chrNW_004624835:3,635,457...3,695,909
JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101703542 probable low-specificity L-threonine aldolase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:7,747,659...7,753,305 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chrNW_004624849:3,108,875...3,146,669
Ensembl chrNW_004624849:3,114,876...3,146,248
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chrNW_004624802:10,713,276...10,718,391
Ensembl chrNW_004624802:10,713,276...10,719,253
JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO
IEA
in the presence of tetrahydrofolate RGD
TreeGrafter
InterPro
PMID:3110140 GO_REF:0000002 GO_REF:0000118 RGD:2300383 NCBI chrNW_004624849:3,108,875...3,146,669
Ensembl chrNW_004624849:3,114,876...3,146,248
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO
IEA
in the presence of tetrahydrofolate RGD
TreeGrafter
InterPro
PMID:3110140 GO_REF:0000002 GO_REF:0000118 RGD:2300383 NCBI chrNW_004624802:10,713,276...10,718,391
Ensembl chrNW_004624802:10,713,276...10,719,253
JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase involved_in ISO
IEA
RGD
TreeGrafter
PMID:12383475 GO_REF:0000118 RGD:1599457 NCBI chrNW_004624847:5,066,356...5,073,538
Ensembl chrNW_004624847:5,067,201...5,077,525
JBrowse link
G Agxt2 alanine--glyoxylate aminotransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:19,858,255...19,909,516
Ensembl chrNW_004624759:19,858,148...19,938,229
JBrowse link
glycine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amt aminomethyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:3,366,023...3,372,266
Ensembl chrNW_004624730:3,366,023...3,371,425
JBrowse link
G Gldc glycine decarboxylase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624736:11,022,691...11,133,950
Ensembl chrNW_004624736:11,022,691...11,134,377
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amt aminomethyltransferase involved_in ISO (PMID:16051266) UniProt PMID:16051266 NCBI chrNW_004624730:3,366,023...3,372,266
Ensembl chrNW_004624730:3,366,023...3,371,425
JBrowse link
G Gcsh glycine cleavage system protein H involved_in ISO
IEA
RGD
TreeGrafter
InterPro
UniProt
PMID:6402507 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:1598699 NCBI chrNW_004624746:6,264,447...6,278,085
Ensembl chrNW_004624746:6,264,458...6,278,085
JBrowse link
G Gldc glycine decarboxylase involved_in ISO
IEA
RGD
TreeGrafter
PMID:6778858 GO_REF:0000118 RGD:1642728 NCBI chrNW_004624736:11,022,691...11,133,950
Ensembl chrNW_004624736:11,022,691...11,134,377
JBrowse link
G LOC101720613 glycine cleavage system H protein, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624741:33,861,296...33,861,814 JBrowse link
glycine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamate synthase involved_in ISO (PMID:10964921) UniProt PMID:10964921 NCBI chrNW_004624760:7,735,606...7,754,750
Ensembl chrNW_004624760:7,735,613...7,754,994
JBrowse link
G LOC101711412 glycine N-acyltransferase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624864:1,578,670...1,593,898
Ensembl chrNW_004624864:1,583,266...1,592,089
JBrowse link
G Ndp norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:30988181) Ensembl
MGI
PMID:30988181 GO_REF:0000107 NCBI chrNW_004624762:11,409,837...11,435,709
Ensembl chrNW_004624762:11,409,727...11,435,811
JBrowse link
G Phgdh phosphoglycerate dehydrogenase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19114063) Ensembl
MGI
PMID:19114063 GO_REF:0000107 NCBI chrNW_004624772:15,473,609...15,514,392
Ensembl chrNW_004624772:15,473,221...15,514,637
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:24698160) RGD
UniProt
PMID:15671219 PMID:24698160 RGD:1359815 NCBI chrNW_004624849:3,108,875...3,146,669
Ensembl chrNW_004624849:3,114,876...3,146,248
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO (PMID:19513116)
(PMID:25619277), (PMID:29180469)
(PMID:33015733)
BHF-UCL
UniProt
RGD
PMID:10457370 PMID:15671219 PMID:19513116 PMID:25619277 PMID:29180469 More... RGD:1359815 RGD:2300380 NCBI chrNW_004624802:10,713,276...10,718,391
Ensembl chrNW_004624802:10,713,276...10,719,253
JBrowse link
glycyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gars1 glycyl-tRNA synthetase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19470612) InterPro
MGI
PMID:19470612 GO_REF:0000002 NCBI chrNW_004624739:172,111...211,229
Ensembl chrNW_004624739:171,777...211,164
JBrowse link
histidyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hars1 histidyl-tRNA synthetase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624743:33,424,705...33,435,767
Ensembl chrNW_004624743:33,423,342...33,435,721
JBrowse link
G Hars2 histidyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624743:33,435,777...33,443,036
Ensembl chrNW_004624743:33,435,806...33,443,227
JBrowse link
homocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blmh bleomycin hydrolase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:2,721,314...2,761,792
Ensembl chrNW_004624786:2,720,383...2,761,968
JBrowse link
G Cbs cystathionine beta-synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624751:5,445,274...5,469,386
Ensembl chrNW_004624751:5,445,241...5,469,657
JBrowse link
homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10953023), (PMID:10993757), (PMID:15131763), (PMID:15555590), (PMID:15622513), (PMID:15916860), (PMID:16226235), (PMID:18541157), (PMID:7878023) Ensembl
MGI
PMID:7878023 PMID:10953023 PMID:10993757 PMID:15131763 PMID:15555590 More... GO_REF:0000107 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624765:5,527,029...5,652,343
Ensembl chrNW_004624765:5,528,112...5,651,415
JBrowse link
G Dpep1 dipeptidase 1 involved_in ISS UniProt GO_REF:0000024 NCBI chrNW_004624746:310,361...321,053
Ensembl chrNW_004624746:310,248...315,654
JBrowse link
G Mmut methylmalonyl-CoA mutase involved_in ISO (PMID:20031578) UniProt PMID:20031578 NCBI chrNW_004624799:14,404,873...14,433,803
Ensembl chrNW_004624799:14,404,662...14,433,632
JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in ISO
IEA
RGD
Ensembl
PMID:18726220 GO_REF:0000107 RGD:2317121 NCBI chrNW_004624818:1,184,736...1,202,708
Ensembl chrNW_004624818:1,187,869...1,199,168
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in ISO
IEA
RGD
TreeGrafter
PMID:11730351 PMID:21121936 GO_REF:0000118 RGD:1601423 RGD:7207080 NCBI chrNW_004624775:13,791,690...13,903,888
Ensembl chrNW_004624775:13,792,043...13,896,559
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624751:5,445,274...5,469,386
Ensembl chrNW_004624751:5,445,241...5,469,657
JBrowse link
G Nox4 NADPH oxidase 4 involved_in ISO (PMID:20031578) UniProt PMID:20031578 NCBI chrNW_004624845:669,880...829,471
Ensembl chrNW_004624845:669,902...827,834
JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 involved_in ISO (PMID:10934207) CAFA PMID:10934207 NCBI chrNW_004624730:22,944,710...23,034,200
Ensembl chrNW_004624730:22,944,184...23,034,231
JBrowse link
G Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in ISO (MGI:6202004|PMID:16447251) UniProt PMID:16447251 MGI:6202004 NCBI chrNW_004624740:16,074,027...16,082,139
Ensembl chrNW_004624740:16,074,141...16,082,223
JBrowse link
isoleucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ilvbl ilvB acetolactate synthase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624901:2,198,000...2,207,849
Ensembl chrNW_004624901:2,198,272...2,206,545
JBrowse link
G Sds serine dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:19,124,706...19,131,757
Ensembl chrNW_004624747:19,123,927...19,132,307
JBrowse link
G Sdsl serine dehydratase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:19,110,425...19,131,161
Ensembl chrNW_004624747:19,109,587...19,116,244
JBrowse link
isoleucine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadsb acyl-CoA dehydrogenase short/branched chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624737:23,949,008...23,999,544
Ensembl chrNW_004624737:23,951,463...23,999,500
JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:1979337), (PMID:8103405) BHF-UCL PMID:1979337 PMID:8103405 NCBI chrNW_004624784:2,833,344...2,879,043 JBrowse link
G Bcat2 branched chain amino acid transaminase 2 acts_upstream_of_or_within ISO (PMID:17767905) RGD
MGI
PMID:11733007 PMID:17767905 RGD:1582175 NCBI chrNW_004624832:5,132,667...5,147,099
Ensembl chrNW_004624832:5,134,590...5,147,290
JBrowse link
G Bckdk branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chrNW_004624782:14,150,019...14,154,124
Ensembl chrNW_004624782:14,150,024...14,154,124
JBrowse link
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624909:681,731...684,130
Ensembl chrNW_004624909:681,731...684,237
JBrowse link
isoleucine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat2 branched chain amino acid transaminase 2 acts_upstream_of_or_within ISO (PMID:14755340) MGI PMID:14755340 NCBI chrNW_004624832:5,132,667...5,147,099
Ensembl chrNW_004624832:5,134,590...5,147,290
JBrowse link
isoleucyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Iars1 isoleucyl-tRNA synthetase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:8052601) MGI
TreeGrafter
InterPro
PMID:8052601 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624868:4,062,938...4,168,712
Ensembl chrNW_004624868:4,063,002...4,168,715
JBrowse link
kynurenine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in ISO (PMID:18620547) UniProt PMID:18620547 NCBI chrNW_004624769:1,586,036...1,611,092
Ensembl chrNW_004624769:1,581,727...1,610,793
JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624771:11,900,020...11,942,943
Ensembl chrNW_004624771:11,899,624...11,942,806
JBrowse link
G Kyat3 kynurenine aminotransferase 3 involved_in ISO (MGI:3835225|PMID:19029248) UniProt PMID:19029248 MGI:3835225 NCBI chrNW_004624742:8,599,862...8,659,110 JBrowse link
L-alanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase involved_in ISO (PMID:17696873), (PMID:18492492), (PMID:22198249) UniProt PMID:17696873 PMID:18492492 PMID:22198249 NCBI chrNW_004624847:5,066,356...5,073,538
Ensembl chrNW_004624847:5,067,201...5,077,525
JBrowse link
G Gpt glutamic--pyruvic transaminase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624735:12,355,476...12,359,910
Ensembl chrNW_004624735:12,355,476...12,360,028
JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624914:460,240...501,087
Ensembl chrNW_004624914:459,701...501,765
JBrowse link
L-alanine catabolic process, by transamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt2 alanine--glyoxylate aminotransferase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624759:19,858,255...19,909,516
Ensembl chrNW_004624759:19,858,148...19,938,229
JBrowse link
L-alanine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpt2 glutamic--pyruvic transaminase 2 involved_in ISO (PMID:11863375) UniProt PMID:11863375 NCBI chrNW_004624914:460,240...501,087
Ensembl chrNW_004624914:459,701...501,765
JBrowse link
L-asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624813:4,642,420...4,661,362
Ensembl chrNW_004624813:4,641,372...4,661,778
JBrowse link
L-asparagine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:8,822,955...8,825,019
Ensembl chrNW_004624752:8,822,740...8,825,032
JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase involved_in ISO (PMID:18492492) UniProt PMID:18492492 NCBI chrNW_004624847:5,066,356...5,073,538
Ensembl chrNW_004624847:5,067,201...5,077,525
JBrowse link
G Cbs cystathionine beta-synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Cdo1 cysteine dioxygenase type 1 involved_in ISO
IEA
RGD
TreeGrafter
PMID:16611641 GO_REF:0000118 RGD:2301357 NCBI chrNW_004624733:6,062,716...6,074,583
Ensembl chrNW_004624733:6,062,502...6,075,210
JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csad cysteine sulfinic acid decarboxylase involved_in ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chrNW_004624904:1,190,393...1,228,337
Ensembl chrNW_004624904:1,189,366...1,228,566
JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csad cysteine sulfinic acid decarboxylase involved_in ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chrNW_004624904:1,190,393...1,228,337
Ensembl chrNW_004624904:1,189,366...1,228,566
JBrowse link
L-glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 ISO RGD PMID:16489927 RGD:13504861 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO RGD PMID:16489927 RGD:13504861 NCBI chrNW_004624746:27,557,994...27,586,257
Ensembl chrNW_004624746:27,558,005...27,586,257
JBrowse link
L-histidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd1 amidohydrolase domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624750:11,352,368...11,377,329
Ensembl chrNW_004624750:11,352,368...11,377,694
JBrowse link
G Hal histidine ammonia-lyase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8486363) InterPro
TreeGrafter
MGI
PMID:8486363 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624750:11,318,572...11,344,326
Ensembl chrNW_004624750:11,318,511...11,343,459
JBrowse link
G Hdc histidine decarboxylase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11478947) Ensembl
TreeGrafter
MGI
PMID:11478947 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624731:9,835,585...9,856,743
Ensembl chrNW_004624731:9,835,596...9,856,743
JBrowse link
G Uroc1 urocanate hydratase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624773:72,871...107,686
Ensembl chrNW_004624773:72,847...107,686
JBrowse link
L-histidine catabolic process to glutamate and formamide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd1 amidohydrolase domain containing 1 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000041 NCBI chrNW_004624750:11,352,368...11,377,329
Ensembl chrNW_004624750:11,352,368...11,377,694
JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624745:31,279,868...31,288,600
Ensembl chrNW_004624745:31,276,314...31,289,063
JBrowse link
G Hal histidine ammonia-lyase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624750:11,318,572...11,344,326
Ensembl chrNW_004624750:11,318,511...11,343,459
JBrowse link
G Uroc1 urocanate hydratase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624773:72,871...107,686
Ensembl chrNW_004624773:72,847...107,686
JBrowse link
L-histidine catabolic process to glutamate and formate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd1 amidohydrolase domain containing 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624750:11,352,368...11,377,329
Ensembl chrNW_004624750:11,352,368...11,377,694
JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624745:31,279,868...31,288,600
Ensembl chrNW_004624745:31,276,314...31,289,063
JBrowse link
G Hal histidine ammonia-lyase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624750:11,318,572...11,344,326
Ensembl chrNW_004624750:11,318,511...11,343,459
JBrowse link
G Uroc1 urocanate hydratase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624773:72,871...107,686
Ensembl chrNW_004624773:72,847...107,686
JBrowse link
L-histidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd1 amidohydrolase domain containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624750:11,352,368...11,377,329
Ensembl chrNW_004624750:11,352,368...11,377,694
JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624745:31,279,868...31,288,600
Ensembl chrNW_004624745:31,276,314...31,289,063
JBrowse link
G Hal histidine ammonia-lyase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624750:11,318,572...11,344,326
Ensembl chrNW_004624750:11,318,511...11,343,459
JBrowse link
G Hdc histidine decarboxylase ISO RGD PMID:5898 PMID:4449071 PMID:7075603 PMID:9525922 PMID:12204113 More... RGD:2303726 RGD:2303727 RGD:2303728 RGD:2303733 RGD:2303734 RGD:2303735 NCBI chrNW_004624731:9,835,585...9,856,743
Ensembl chrNW_004624731:9,835,596...9,856,743
JBrowse link
G Uroc1 urocanate hydratase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624773:72,871...107,686
Ensembl chrNW_004624773:72,847...107,686
JBrowse link
L-kynurenine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kyat3 kynurenine aminotransferase 3 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624742:8,599,862...8,659,110 JBrowse link
G Kynu kynureninase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624732:42,627,789...42,751,037
Ensembl chrNW_004624732:42,627,715...42,753,165
JBrowse link
L-kynurenine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624769:1,586,036...1,611,092
Ensembl chrNW_004624769:1,581,727...1,610,793
JBrowse link
G Kmo kynurenine 3-monooxygenase ISO RGD PMID:23690293 RGD:13513904 NCBI chrNW_004624771:11,900,020...11,942,943
Ensembl chrNW_004624771:11,899,624...11,942,806
JBrowse link
G LOC101714047 kynurenine--oxoglutarate transaminase 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624760:6,168,948...6,186,149
Ensembl chrNW_004624760:6,168,918...6,186,149
JBrowse link
L-leucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:14,074,701...14,166,075
Ensembl chrNW_004624752:14,106,884...14,164,064
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in ISO
IEA
RGD
TreeGrafter
PMID:11733007 GO_REF:0000118 RGD:1582175 NCBI chrNW_004624832:5,132,667...5,147,099
Ensembl chrNW_004624832:5,134,590...5,147,290
JBrowse link
L-leucine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bckdk branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chrNW_004624782:14,150,019...14,154,124
Ensembl chrNW_004624782:14,150,024...14,154,124
JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:8,349,288...8,363,178
Ensembl chrNW_004624764:8,348,724...8,363,220
JBrowse link
G LOC101710885 isovaleryl-CoA dehydrogenase, mitochondrial involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004624804:7,687,531...7,722,497
Ensembl chrNW_004624804:7,709,300...7,722,930
JBrowse link
G Mccc2 methylcrotonyl-CoA carboxylase subunit 2 involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004624905:645,782...709,611
Ensembl chrNW_004624905:645,715...712,364
JBrowse link
L-leucine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat2 branched chain amino acid transaminase 2 acts_upstream_of_or_within ISO (PMID:17767905)
(PMID:14755340)
MGI PMID:14755340 PMID:17767905 NCBI chrNW_004624832:5,132,667...5,147,099
Ensembl chrNW_004624832:5,134,590...5,147,290
JBrowse link
G Dao D-amino acid oxidase acts_upstream_of_or_within ISO (PMID:15026304) MGI PMID:15026304 NCBI chrNW_004624747:12,094,658...12,117,000
Ensembl chrNW_004624747:12,105,133...12,116,604
JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10567240) Ensembl
MGI
PMID:10567240 GO_REF:0000107 NCBI chrNW_004624783:13,831,220...13,904,806
Ensembl chrNW_004624783:13,831,150...13,902,082
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:1,594,988...1,615,210
Ensembl chrNW_004624786:1,600,395...1,616,290
JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624783:13,831,220...13,904,806
Ensembl chrNW_004624783:13,831,150...13,902,082
JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624734:26,802,902...26,824,632
Ensembl chrNW_004624734:26,803,344...26,825,272
JBrowse link
L-methionine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine--homocysteine S-methyltransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624869:3,618,895...3,639,621
Ensembl chrNW_004624869:3,617,948...3,642,860
JBrowse link
G Bhmt2 betaine--homocysteine S-methyltransferase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624869:3,571,154...3,596,389
Ensembl chrNW_004624869:3,576,369...3,599,275
JBrowse link
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004624846:5,203,305...5,208,931
Ensembl chrNW_004624846:5,203,008...5,212,942
JBrowse link
G Apip APAF1 interacting protein involved_in IEA UniProt
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004624767:12,257,591...12,285,968
Ensembl chrNW_004624767:12,257,597...12,280,154
JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004624757:8,456,021...8,488,262
Ensembl chrNW_004624757:8,456,966...8,488,229
JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624901:1,105,763...1,110,281
Ensembl chrNW_004624901:1,106,059...1,109,931
JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624736:25,778,191...25,826,945
Ensembl chrNW_004624736:25,778,240...25,826,530
JBrowse link
L-methionine salvage from S-adenosylmethionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apip APAF1 interacting protein involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624767:12,257,591...12,285,968
Ensembl chrNW_004624767:12,257,597...12,280,154
JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624757:8,456,021...8,488,262
Ensembl chrNW_004624757:8,456,966...8,488,229
JBrowse link
L-phenylalanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fah fumarylacetoacetate hydrolase involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624941:1,039,389...1,056,568
Ensembl chrNW_004624941:1,039,429...1,056,568
JBrowse link
G Gstz1 glutathione S-transferase zeta 1 involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004624734:24,575,009...24,595,944
Ensembl chrNW_004624734:24,575,540...24,595,784
JBrowse link
G Hgd homogentisate 1,2-dioxygenase involved_in IEA InterPro
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004624731:27,549,245...27,604,142
Ensembl chrNW_004624731:27,548,922...27,604,131
JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in ISO (PMID:17356132), (PMID:25767141) UniProt PMID:17356132 PMID:25767141 NCBI chrNW_004624832:4,404,818...4,444,551
Ensembl chrNW_004624832:4,431,903...4,444,651
JBrowse link
G Pah phenylalanine hydroxylase involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000041 NCBI chrNW_004624750:5,527,720...5,598,173
Ensembl chrNW_004624750:5,527,638...5,601,964
JBrowse link
G Qdpr quinoid dihydropteridine reductase involved_in ISO
IEA
RGD
TreeGrafter
PMID:4155291 GO_REF:0000118 RGD:5128604 NCBI chrNW_004624755:14,333,308...14,353,949
Ensembl chrNW_004624755:14,333,235...14,357,159
JBrowse link
G Tat tyrosine aminotransferase involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624746:13,793,593...13,803,227
Ensembl chrNW_004624746:13,790,440...13,803,202
JBrowse link
L-phenylalanine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase ISO RGD PMID:16953590 RGD:1601531 NCBI chrNW_004624750:5,527,720...5,598,173
Ensembl chrNW_004624750:5,527,638...5,601,964
JBrowse link
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 involved_in ISO PMID:1465414 CAFA PMID:1465414 RGD:12792994 NCBI chrNW_004624754:4,893,868...4,898,410
Ensembl chrNW_004624754:4,893,868...4,898,363
JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within ISO (PMID:16532389) MGI PMID:16532389 NCBI chrNW_004624762:729,294...734,761
Ensembl chrNW_004624762:728,731...734,544
JBrowse link
L-proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004624737:6,921,619...6,970,113
Ensembl chrNW_004624737:6,921,222...6,970,488
JBrowse link
G Oat ornithine aminotransferase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624737:22,657,158...22,679,213
Ensembl chrNW_004624737:22,664,129...22,678,535
JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004624801:10,777,407...10,781,572
Ensembl chrNW_004624801:10,776,747...10,781,614
JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004624807:37,742...63,887
Ensembl chrNW_004624807:31,830...63,985
JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA UniProt
TreeGrafter
GO_REF:0000041 GO_REF:0000118 NCBI chrNW_004624735:13,136,287...13,142,051 JBrowse link
L-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phgdh phosphoglycerate dehydrogenase involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624772:15,473,609...15,514,392
Ensembl chrNW_004624772:15,473,221...15,514,637
JBrowse link
G Psat1 phosphoserine aminotransferase 1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624811:5,727,912...5,751,921
Ensembl chrNW_004624811:5,727,685...5,751,607
JBrowse link
G Psph phosphoserine phosphatase involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624740:8,212,051...8,233,358
Ensembl chrNW_004624740:8,213,574...8,226,224
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO RGD PMID:10457370 RGD:2300380 NCBI chrNW_004624802:10,713,276...10,718,391
Ensembl chrNW_004624802:10,713,276...10,719,253
JBrowse link
L-serine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Sds serine dehydratase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624747:19,124,706...19,131,757
Ensembl chrNW_004624747:19,123,927...19,132,307
JBrowse link
G Sdsl serine dehydratase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:19,110,425...19,131,161
Ensembl chrNW_004624747:19,109,587...19,116,244
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:3,108,875...3,146,669
Ensembl chrNW_004624849:3,114,876...3,146,248
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:10,713,276...10,718,391
Ensembl chrNW_004624802:10,713,276...10,719,253
JBrowse link
L-serine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase involved_in ISO (PMID:10347152) UniProt PMID:10347152 NCBI chrNW_004624847:5,066,356...5,073,538
Ensembl chrNW_004624847:5,067,201...5,077,525
JBrowse link
G Cbs cystathionine beta-synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Phgdh phosphoglycerate dehydrogenase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19114063) Ensembl
MGI
PMID:19114063 GO_REF:0000107 NCBI chrNW_004624772:15,473,609...15,514,392
Ensembl chrNW_004624772:15,473,221...15,514,637
JBrowse link
G Psat1 phosphoserine aminotransferase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624811:5,727,912...5,751,921
Ensembl chrNW_004624811:5,727,685...5,751,607
JBrowse link
G Psph phosphoserine phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:8,212,051...8,233,358
Ensembl chrNW_004624740:8,213,574...8,226,224
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:24698160) UniProt PMID:24698160 NCBI chrNW_004624849:3,108,875...3,146,669
Ensembl chrNW_004624849:3,114,876...3,146,248
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO (PMID:25619277), (PMID:29180469)
(PMID:33015733)
UniProt PMID:25619277 PMID:29180469 PMID:33015733 NCBI chrNW_004624802:10,713,276...10,718,391
Ensembl chrNW_004624802:10,713,276...10,719,253
JBrowse link
G Srr serine racemase involved_in
acts_upstream_of_or_within
ISO (PMID:11054547), (PMID:15193426), (PMID:20106978)
(PMID:10557334), (PMID:12021263), (PMID:15710237), (PMID:16517698)
UniProt
MGI
PMID:10557334 PMID:11054547 PMID:12021263 PMID:15193426 PMID:15710237 More... RGD:8554326 NCBI chrNW_004624786:4,969,742...4,988,874
Ensembl chrNW_004624786:4,977,574...4,988,945
JBrowse link
leucyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lars1 leucyl-tRNA synthetase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624774:5,609,623...5,673,815
Ensembl chrNW_004624774:5,609,623...5,673,791
JBrowse link
G Lars2 leucyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624730:75,228,638...75,335,045
Ensembl chrNW_004624730:75,228,316...75,335,052
JBrowse link
lysine biosynthetic process via aminoadipic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdhppt aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624784:869,202...894,929
Ensembl chrNW_004624784:869,214...893,237
JBrowse link
G Aass aminoadipate-semialdehyde synthase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624783:13,831,220...13,904,806
Ensembl chrNW_004624783:13,831,150...13,902,082
JBrowse link
lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624783:13,831,220...13,904,806
Ensembl chrNW_004624783:13,831,150...13,902,082
JBrowse link
lysine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624783:13,831,220...13,904,806
Ensembl chrNW_004624783:13,831,150...13,902,082
JBrowse link
lysyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kars1 lysyl-tRNA synthetase 1 involved_in ISO
IEA
RGD
TreeGrafter
InterPro
PMID:7082655 PMID:7372681 GO_REF:0000002 GO_REF:0000118 RGD:2303393 RGD:2303394 NCBI chrNW_004624746:11,337,505...11,354,950
Ensembl chrNW_004624746:11,337,529...11,353,797
JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dct dopachrome tautomerase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624879:1,241,593...1,346,765
Ensembl chrNW_004624879:1,241,910...1,279,444
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in ISO (PMID:25513726), (PMID:32966160) UniProt PMID:25513726 PMID:32966160 NCBI chrNW_004624896:2,163,043...2,432,016
Ensembl chrNW_004624896:2,163,468...2,415,432
JBrowse link
G Slc45a2 solute carrier family 45 member 2 involved_in ISO (PMID:32966160)
(MGI:7338895|PMID:35469906)
UniProt PMID:32966160 PMID:35469906 MGI:7338895 NCBI chrNW_004624759:20,640,407...20,701,790
Ensembl chrNW_004624759:20,673,033...20,701,361
JBrowse link
methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624846:5,203,305...5,208,931
Ensembl chrNW_004624846:5,203,008...5,212,942
JBrowse link
G Apip APAF1 interacting protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624767:12,257,591...12,285,968
Ensembl chrNW_004624767:12,257,597...12,280,154
JBrowse link
G Bhmt betaine--homocysteine S-methyltransferase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15217352) RGD
MGI
UniProt
InterPro
PMID:15217352 PMID:15845641 GO_REF:0000002 GO_REF:0000117 RGD:1359026 NCBI chrNW_004624869:3,618,895...3,639,621
Ensembl chrNW_004624869:3,617,948...3,642,860
JBrowse link
G Bhmt2 betaine--homocysteine S-methyltransferase 2 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000117 NCBI chrNW_004624869:3,571,154...3,596,389
Ensembl chrNW_004624869:3,576,369...3,599,275
JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624757:8,456,021...8,488,262
Ensembl chrNW_004624757:8,456,966...8,488,229
JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624901:1,105,763...1,110,281
Ensembl chrNW_004624901:1,106,059...1,109,931
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:25633902) BHF-UCL PMID:25633902 NCBI chrNW_004624734:36,560,486...36,620,043
Ensembl chrNW_004624734:36,560,486...36,620,026
JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15217352) MGI
TreeGrafter
PMID:15217352 GO_REF:0000118 NCBI chrNW_004624818:1,184,736...1,202,708
Ensembl chrNW_004624818:1,187,869...1,199,168
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:11158293) RGD
TreeGrafter
MGI
Ensembl
UniProt
InterPro
PMID:11158293 PMID:11730351 PMID:15845641 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 RGD:1359026 RGD:1601423 NCBI chrNW_004624775:13,791,690...13,903,888
Ensembl chrNW_004624775:13,792,043...13,896,559
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624751:5,445,274...5,469,386
Ensembl chrNW_004624751:5,445,241...5,469,657
JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A involved_in ISO (PMID:10677294) UniProt PMID:10677294 NCBI chrNW_004624841:6,843,725...6,864,700
Ensembl chrNW_004624841:6,843,741...6,862,683
JBrowse link
methionine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624846:5,203,305...5,208,931
Ensembl chrNW_004624846:5,203,008...5,212,942
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5621260|PMID:23190757) BHF-UCL PMID:23190757 MGI:5621260 NCBI chrNW_004624734:36,560,486...36,620,043
Ensembl chrNW_004624734:36,560,486...36,620,026
JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624818:1,184,736...1,202,708
Ensembl chrNW_004624818:1,187,869...1,199,168
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:21121936 RGD:7207080 NCBI chrNW_004624775:13,791,690...13,903,888
Ensembl chrNW_004624775:13,792,043...13,896,559
JBrowse link
methionyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mars1 methionyl-tRNA synthetase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624802:10,443,216...10,460,971
Ensembl chrNW_004624802:10,443,223...10,460,971
JBrowse link
G Mars2 methionyl-tRNA synthetase 2, mitochondrial involved_in ISO (PMID:15274629) UniProt PMID:15274629 NCBI chrNW_004624889:2,624,053...2,632,177
Ensembl chrNW_004624889:2,630,303...2,632,084
JBrowse link
mitochondrial alanyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars2 alanyl-tRNA synthetase 2, mitochondrial involved_in ISO (PMID:21549344) BHF-UCL PMID:21549344 NCBI chrNW_004624754:15,563,878...15,573,538
Ensembl chrNW_004624754:15,563,872...15,573,536
JBrowse link
mitochondrial asparaginyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dars2 aspartyl-tRNA synthetase 2, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:8,003,208...8,033,981
Ensembl chrNW_004624771:8,003,295...8,034,043
JBrowse link
mitochondrial glycyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gars1 glycyl-tRNA synthetase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:172,111...211,229
Ensembl chrNW_004624739:171,777...211,164
JBrowse link
mitochondrial seryl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sars2 seryl-tRNA synthetase 2, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,269,773...12,280,537
Ensembl chrNW_004624794:12,269,615...12,280,558
JBrowse link
mitochondrial tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wars2 tryptophanyl tRNA synthetase 2, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:14,652,874...14,735,732
Ensembl chrNW_004624772:14,654,403...14,735,315
JBrowse link
mitochondrial tyrosyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Yars2 tyrosyl-tRNA synthetase 2 involved_in ISO (PMID:20598274) BHF-UCL PMID:20598274 NCBI chrNW_004624778:3,382,993...3,390,357
Ensembl chrNW_004624778:3,383,017...3,390,036
JBrowse link
N(omega),N(omega)-dimethyl-L-arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt2 alanine--glyoxylate aminotransferase 2 involved_in ISO PMID:2123486 UniProt PMID:2123486 RGD:401901222 NCBI chrNW_004624759:19,858,255...19,909,516
Ensembl chrNW_004624759:19,858,148...19,938,229
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 involved_in ISO (PMID:19278978) BHF-UCL PMID:19278978 NCBI chrNW_004624807:7,201,924...7,292,010
Ensembl chrNW_004624807:7,201,777...7,250,386
JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 involved_in ISO (PMID:19278978) BHF-UCL PMID:19278978 NCBI chrNW_004624807:7,201,924...7,292,010
Ensembl chrNW_004624807:7,201,777...7,250,386
JBrowse link
negative regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atcay ATCAY kinesin light chain interacting caytaxin involved_in ISO (PMID:16899818) UniProt PMID:16899818 NCBI chrNW_004624828:6,471,452...6,495,142
Ensembl chrNW_004624828:6,471,460...6,495,142
JBrowse link
negative regulation of ornithine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oaz1 ornithine decarboxylase antizyme 1 ISO RGD PMID:8166639 RGD:401851045 NCBI chrNW_004624828:6,617,342...6,620,466
Ensembl chrNW_004624828:6,617,727...6,620,402
JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 involved_in ISO (PMID:11092761), (PMID:26297558) UniProt PMID:11092761 PMID:26297558 NCBI chrNW_004624737:6,921,619...6,970,113
Ensembl chrNW_004624737:6,921,222...6,970,488
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otc ornithine transcarbamylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:17,038,223...17,104,853
Ensembl chrNW_004624762:17,038,223...17,104,965
JBrowse link
ornithine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin2 antizyme inhibitor 2 acts_upstream_of_or_within ISO (PMID:16916800) MGI PMID:16916800 NCBI chrNW_004624764:16,145,696...16,177,588
Ensembl chrNW_004624764:16,145,308...16,175,000
JBrowse link
G Hnf4a hepatocyte nuclear factor 4 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624790:10,039,344...10,065,167
Ensembl chrNW_004624790:10,038,999...10,100,649
JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:4062872 RGD:2300098 NCBI chrNW_004624762:17,038,223...17,104,853
Ensembl chrNW_004624762:17,038,223...17,104,965
JBrowse link
G Slc25a2 solute carrier family 25 member 2 involved_in ISO (PMID:12948741) UniProt PMID:12948741 NCBI chrNW_004624774:540,820...542,200
Ensembl chrNW_004624774:541,115...542,020
JBrowse link
phenylalanyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624756:19,550,198...20,016,561
Ensembl chrNW_004624756:19,550,103...19,928,538
JBrowse link
G Farsa phenylalanyl-tRNA synthetase subunit alpha involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624901:492,673...505,815
Ensembl chrNW_004624901:492,817...505,911
JBrowse link
G Farsb phenylalanyl-tRNA synthetase subunit beta involved_in IEA Ensembl
TreeGrafter
UniProt
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004624823:2,559,757...2,627,606
Ensembl chrNW_004624823:2,559,756...2,627,606
JBrowse link
positive regulation of ammonia assimilation cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1 group H member 4 involved_in ISO (MGI:5306122|PMID:21757002) BHF-UCL PMID:21757002 MGI:5306122 NCBI chrNW_004624750:7,222,306...7,303,809
Ensembl chrNW_004624750:7,219,251...7,303,834
JBrowse link
positive regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1 group H member 4 involved_in ISO (MGI:5306122|PMID:21757002) BHF-UCL PMID:21757002 MGI:5306122 NCBI chrNW_004624750:7,222,306...7,303,809
Ensembl chrNW_004624750:7,219,251...7,303,834
JBrowse link
positive regulation of homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase ISO RGD PMID:15779086 RGD:2289784 NCBI chrNW_004624747:569,127...588,479
Ensembl chrNW_004624747:581,832...588,333
JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in ISO (PMID:16731528) ParkinsonsUK-UCL PMID:16731528 NCBI chrNW_004624818:3,900,917...3,915,457
Ensembl chrNW_004624818:3,900,917...3,911,042
JBrowse link
proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family member A1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624737:6,921,619...6,970,113
Ensembl chrNW_004624737:6,921,222...6,970,488
JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624801:10,777,407...10,781,572
Ensembl chrNW_004624801:10,776,747...10,781,614
JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624807:37,742...63,887
Ensembl chrNW_004624807:31,830...63,985
JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004624735:13,136,287...13,142,051 JBrowse link
proline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:12,094,658...12,117,000
Ensembl chrNW_004624747:12,105,133...12,116,604
JBrowse link
G LOC101699174 proline dehydrogenase 1, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624747:885,807...918,249 JBrowse link
G Prodh2 proline dehydrogenase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624794:10,098,737...10,104,212 JBrowse link
proline catabolic process to glutamate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 NCBI chrNW_004624764:4,051,999...4,081,954
Ensembl chrNW_004624764:4,051,178...4,082,142
JBrowse link
G LOC101699174 proline dehydrogenase 1, mitochondrial involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:885,807...918,249 JBrowse link
G Prodh2 proline dehydrogenase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:10,098,737...10,104,212 JBrowse link
proline metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh4a1 aldehyde dehydrogenase 4 family member A1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624764:4,051,999...4,081,954
Ensembl chrNW_004624764:4,051,178...4,082,142
JBrowse link
G LOC101699174 proline dehydrogenase 1, mitochondrial involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624747:885,807...918,249 JBrowse link
G Prodh2 proline dehydrogenase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004624794:10,098,737...10,104,212 JBrowse link
prolyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eprs1 glutamyl-prolyl-tRNA synthetase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624835:3,635,829...3,695,875
Ensembl chrNW_004624835:3,635,457...3,695,909
JBrowse link
G Pars2 prolyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624862:5,084,676...5,093,914
Ensembl chrNW_004624862:5,087,783...5,092,422
JBrowse link
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase (putative) involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:1,839,667...1,853,344
Ensembl chrNW_004624764:1,843,227...1,853,350
JBrowse link
putrescine biosynthetic process from ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624763:19,643,980...19,667,125
Ensembl chrNW_004624763:19,643,980...19,667,125
JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:16,145,696...16,177,588
Ensembl chrNW_004624764:16,145,308...16,175,000
JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624865:4,851,565...4,858,868
Ensembl chrNW_004624865:4,851,878...4,860,558
JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:4830440|PMID:19284480) UniProt PMID:19284480 MGI:4830440 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087
JBrowse link
regulation of arginine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase involved_in ISO (MGI:5496931|PMID:23643539) UniProt PMID:23643539 MGI:5496931 NCBI chrNW_004624771:11,861,537...11,886,154
Ensembl chrNW_004624771:11,856,884...11,887,066
JBrowse link
G Slc7a7 solute carrier family 7 member 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17376816) Ensembl
TreeGrafter
MGI
PMID:17376816 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624820:9,692,057...9,757,251
Ensembl chrNW_004624820:9,708,482...9,757,251
JBrowse link
regulation of cellular amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ins insulin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:14,999,088...15,000,035
Ensembl chrNW_004624767:14,999,088...15,000,035
JBrowse link
regulation of cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO (PMID:17200146) MGI PMID:17200146 NCBI chrNW_004624777:18,540,006...18,619,881
Ensembl chrNW_004624777:18,546,799...18,619,947
JBrowse link
regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO RGD PMID:19858196 RGD:6484536 NCBI chrNW_004624743:30,517,034...30,635,740
Ensembl chrNW_004624743:30,546,323...30,635,737
JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO (PMID:24548853)
(PMID:21490221), (PMID:25429150)
MGI PMID:21490221 PMID:24548853 PMID:25429150 NCBI chrNW_004624777:18,540,006...18,619,881
Ensembl chrNW_004624777:18,546,799...18,619,947
JBrowse link
regulation of glutamine family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt4 sirtuin 4 involved_in ISO (MGI:5490691|PMID:23562301) CACAO PMID:23562301 MGI:5490691 NCBI chrNW_004624747:13,329,662...13,352,151
Ensembl chrNW_004624747:13,335,442...13,352,201
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase acts_upstream_of_or_within ISO (PMID:12023972) RGD
MGI
PMID:11741948 PMID:12023972 RGD:730275 NCBI chrNW_004624842:5,053,336...5,071,902
Ensembl chrNW_004624842:5,053,280...5,072,679
JBrowse link
S-adenosylhomocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gamt guanidinoacetate N-methyltransferase ISO RGD PMID:15533043 RGD:1359081 NCBI chrNW_004624828:7,294,380...7,297,787
Ensembl chrNW_004624828:7,294,327...7,297,303
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase ISO RGD PMID:9192075 RGD:2289655 NCBI chrNW_004624818:5,165,923...5,174,761
Ensembl chrNW_004624818:5,165,876...5,174,828
JBrowse link
G LOC101697457 glycine N-methyltransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:16,522,771...16,525,292
Ensembl chrNW_004624754:16,520,823...16,525,512
JBrowse link
G Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase ISO RGD PMID:8263531 RGD:729481 NCBI chrNW_004624785:8,267,328...8,326,550
Ensembl chrNW_004624785:8,263,113...8,326,549
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase ISO RGD PMID:8344945 RGD:729486 NCBI chrNW_004624849:3,818,115...3,907,250
Ensembl chrNW_004624849:3,817,915...3,908,888
JBrowse link
sarcosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sardh sarcosine dehydrogenase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:2,030,835...2,070,517
Ensembl chrNW_004624760:2,032,326...2,066,584
JBrowse link
sarcosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101697457 glycine N-methyltransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:16,522,771...16,525,292
Ensembl chrNW_004624754:16,520,823...16,525,512
JBrowse link
selenocysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sephs1 selenophosphate synthetase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624805:1,850,796...1,878,024
Ensembl chrNW_004624805:1,851,337...1,873,731
JBrowse link
G Sephs2 selenophosphate synthetase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17346238) MGI
TreeGrafter
PMID:17346238 GO_REF:0000118 NCBI chrNW_004624782:13,610,166...13,612,553 JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase involved_in ISO PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chrNW_004624847:3,260,966...3,278,915
Ensembl chrNW_004624847:3,260,952...3,279,526
JBrowse link
selenocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Txnrd1 thioredoxin reductase 1 ISO RGD PMID:10512699 RGD:634379 NCBI chrNW_004624750:4,444,318...4,536,384
Ensembl chrNW_004624750:4,443,915...4,510,380
JBrowse link
serine family amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:25633902) BHF-UCL PMID:25633902 NCBI chrNW_004624734:36,560,486...36,620,043
Ensembl chrNW_004624734:36,560,486...36,620,026
JBrowse link
serine family amino acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:16,198,423...16,229,952
Ensembl chrNW_004624749:16,213,785...16,226,700
JBrowse link
serine family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5621260|PMID:23190757) BHF-UCL PMID:23190757 MGI:5621260 NCBI chrNW_004624734:36,560,486...36,620,043
Ensembl chrNW_004624734:36,560,486...36,620,026
JBrowse link
G Ndp norrin cystine knot growth factor NDP involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:30988181) Ensembl
MGI
PMID:30988181 GO_REF:0000107 NCBI chrNW_004624762:11,409,837...11,435,709
Ensembl chrNW_004624762:11,409,727...11,435,811
JBrowse link
G Srr serine racemase acts_upstream_of_or_within ISO (PMID:15536068) MGI PMID:15536068 NCBI chrNW_004624786:4,969,742...4,988,874
Ensembl chrNW_004624786:4,977,574...4,988,945
JBrowse link
seryl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sars1 seryl-tRNA synthetase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624772:4,963,173...4,978,294 JBrowse link
G Sars2 seryl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624794:12,269,773...12,280,537
Ensembl chrNW_004624794:12,269,615...12,280,558
JBrowse link
threonine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase like 2 NOT|acts_upstream_of_or_within ISO (PMID:17034760) MGI PMID:17034760 NCBI chrNW_004624749:16,198,423...16,229,952
Ensembl chrNW_004624749:16,213,785...16,226,700
JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcat glycine C-acetyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624752:10,095,979...10,103,442
Ensembl chrNW_004624752:10,089,827...10,103,515
JBrowse link
G LOC101703542 probable low-specificity L-threonine aldolase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:7,747,659...7,753,305 JBrowse link
G LOC101705643 L-threonine 3-dehydrogenase, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:25,035,628...25,051,431 JBrowse link
G Sds serine dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:19,124,706...19,131,757
Ensembl chrNW_004624747:19,123,927...19,132,307
JBrowse link
G Sdsl serine dehydratase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:19,110,425...19,131,161
Ensembl chrNW_004624747:19,109,587...19,116,244
JBrowse link
threonine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phgdh phosphoglycerate dehydrogenase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19114063) Ensembl
MGI
PMID:19114063 GO_REF:0000107 NCBI chrNW_004624772:15,473,609...15,514,392
Ensembl chrNW_004624772:15,473,221...15,514,637
JBrowse link
threonyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tars1 threonyl-tRNA synthetase 1 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624759:21,132,104...21,154,533
Ensembl chrNW_004624759:21,132,116...21,154,620
JBrowse link
G Tars2 threonyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624772:18,221,704...18,234,080
Ensembl chrNW_004624772:18,221,459...18,240,601
JBrowse link
G Tars3 threonyl-tRNA synthetase 3 involved_in ISO (MGI:6164765|PMID:29579307) UniProt PMID:29579307 MGI:6164765 NCBI chrNW_004624768:3,126,637...3,183,094
Ensembl chrNW_004624768:3,126,695...3,182,133
JBrowse link
transsulfuration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase ISO RGD PMID:16636197 RGD:1600624 NCBI chrNW_004624745:27,676,430...27,687,573
Ensembl chrNW_004624745:27,673,748...27,688,462
JBrowse link
G Cth cystathionine gamma-lyase involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624742:25,619,261...25,642,477
Ensembl chrNW_004624742:25,619,277...25,642,875
JBrowse link
G Mpst mercaptopyruvate sulfurtransferase ISO RGD PMID:17130129 RGD:9685559 NCBI chrNW_004624752:10,756,634...10,764,950
Ensembl chrNW_004624752:10,756,634...10,764,936
JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (MGI:5621260|PMID:23190757) BHF-UCL PMID:23190757 MGI:5621260 NCBI chrNW_004624734:36,560,486...36,620,043
Ensembl chrNW_004624734:36,560,486...36,620,026
JBrowse link
tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dars2 aspartyl-tRNA synthetase 2, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:8,003,208...8,033,981
Ensembl chrNW_004624771:8,003,295...8,034,043
JBrowse link
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624756:19,550,198...20,016,561
Ensembl chrNW_004624756:19,550,103...19,928,538
JBrowse link
G Yars2 tyrosyl-tRNA synthetase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624778:3,382,993...3,390,357
Ensembl chrNW_004624778:3,383,017...3,390,036
JBrowse link
tRNA aminoacylation for mitochondrial protein translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial involved_in ISO (PMID:19805282) UniProt PMID:19805282 NCBI chrNW_004624782:8,698,743...8,719,064
Ensembl chrNW_004624782:8,700,195...8,719,911
JBrowse link
tRNA aminoacylation for protein translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dars2 aspartyl-tRNA synthetase 2, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624771:8,003,208...8,033,981
Ensembl chrNW_004624771:8,003,295...8,034,043
JBrowse link
G Eprs1 glutamyl-prolyl-tRNA synthetase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624835:3,635,829...3,695,875
Ensembl chrNW_004624835:3,635,457...3,695,909
JBrowse link
G Gars1 glycyl-tRNA synthetase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624739:172,111...211,229
Ensembl chrNW_004624739:171,777...211,164
JBrowse link
G Hars1 histidyl-tRNA synthetase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624743:33,424,705...33,435,767
Ensembl chrNW_004624743:33,423,342...33,435,721
JBrowse link
G Pars2 prolyl-tRNA synthetase 2, mitochondrial involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624862:5,084,676...5,093,914
Ensembl chrNW_004624862:5,087,783...5,092,422
JBrowse link
G Tars1 threonyl-tRNA synthetase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624759:21,132,104...21,154,533
Ensembl chrNW_004624759:21,132,116...21,154,620
JBrowse link
G Tars2 threonyl-tRNA synthetase 2, mitochondrial involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624772:18,221,704...18,234,080
Ensembl chrNW_004624772:18,221,459...18,240,601
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chrNW_004624732:34,232,890...34,294,195
Ensembl chrNW_004624732:34,232,908...34,292,898
JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624738:24,409,531...24,421,384
Ensembl chrNW_004624738:24,407,551...24,421,561
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004624780:3,684,941...3,697,506
Ensembl chrNW_004624780:3,685,069...3,697,474
JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in ISO (PMID:17356132), (PMID:25767141) UniProt PMID:17356132 PMID:25767141 NCBI chrNW_004624832:4,404,818...4,444,551
Ensembl chrNW_004624832:4,431,903...4,444,651
JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624771:11,900,020...11,942,943
Ensembl chrNW_004624771:11,899,624...11,942,806
JBrowse link
G Kynu kynureninase involved_in IEA UniProt
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624732:42,627,789...42,751,037
Ensembl chrNW_004624732:42,627,715...42,753,165
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 GO_REF:0000117 NCBI chrNW_004624848:2,380,827...2,395,807
Ensembl chrNW_004624848:2,380,670...2,396,314
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004624732:42,627,789...42,751,037
Ensembl chrNW_004624732:42,627,715...42,753,165
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in ISO
IEA
RGD
TreeGrafter
PMID:7236232 GO_REF:0000118 RGD:2303721 NCBI chrNW_004624848:2,380,827...2,395,807
Ensembl chrNW_004624848:2,380,670...2,396,314
JBrowse link