Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:glycoprotein catabolic process
go back to main search page
Accession:GO:0006516 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.
Synonyms:exact_synonym: glycoprotein breakdown;   glycoprotein catabolism;   glycoprotein degradation


show annotations for term's descendants           Sort by:
glycoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (MGI:3654428|PMID:16431915) MGI PMID:16431915 MGI:3654428 NCBI chr 1:160,217,526...160,281,785
Ensembl chr 1:164,372,977...164,436,977 		JBrowse link
G FBXO2 F-box protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3573989|PMID:15723043) MGI
Ensembl		 PMID:15723043 GO_REF:0000107 MGI:3573989 NCBI chr 1:10,408,853...10,415,174
Ensembl chr 1:11,626,713...11,633,171 		JBrowse link
G FBXO6 F-box protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:10,414,856...10,436,406
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837
Ensembl chr 1:11,643,009...11,654,837 		JBrowse link
G LOC117975273 sialidase-4-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:130,914,893...130,923,565 JBrowse link
G MANBA mannosidase beta acts_upstream_of_or_within
involved_in		 ISO (MGI:57603|PMID:3447593)
(MGI:3615066|PMID:16377659)		 MGI
UniProt		 PMID:3447593 PMID:16377659 MGI:3615066 MGI:57603 NCBI chr 4:95,055,206...95,184,727
Ensembl chr 4:105,718,124...105,846,251 		JBrowse link
G NEU2 neuraminidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:120,260,420...120,262,930
Ensembl chr2B:239,174,532...239,176,917 		JBrowse link
G NEU4 neuraminidase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:130,824,179...130,833,287 JBrowse link
G NGLY1 N-glycanase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:25,618,768...25,683,293
Ensembl chr 3:25,950,701...26,021,504 		JBrowse link
G STT3B STT3 oligosaccharyltransferase complex catalytic subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:31,454,297...31,557,189
Ensembl chr 3:31,771,265...31,873,381 		JBrowse link
elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CELA1 chymotrypsin like elastase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5641427|PMID:24793170) MGI
Ensembl		 PMID:24793170 GO_REF:0000107 MGI:5641427 NCBI chr12:37,407,189...37,425,684
Ensembl chr12:38,292,562...38,310,197 		JBrowse link
G CTSL cathepsin L involved_in ISO (MGI:6259330|PMID:12417635) UniProt PMID:12417635 MGI:6259330 NCBI chr 9:58,851,899...58,857,170
Ensembl chr 9:86,903,006...86,908,303 		JBrowse link
G MMP12 matrix metallopeptidase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:97,809,644...97,822,063
Ensembl chr11:101,294,475...101,306,762 		JBrowse link
heparan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPC1 glypican 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:127,684,839...127,717,294
Ensembl chr2B:246,511,082...246,523,569 		JBrowse link
G GUSB glucuronidase beta involved_in ISO (MGI:7281718|PMID:23897660), (MGI:7284274|PMID:11273777) MGI PMID:11273777 PMID:23897660 MGI:7281718 MGI:7284274 NCBI chr 7:60,087,130...60,109,289
Ensembl chr 7:64,724,841...64,744,909 		JBrowse link
G HGSNAT heparan-alpha-glucosaminide N-acetyltransferase involved_in ISO (MGI:3703408|PMID:16960811) MGI PMID:16960811 MGI:3703408 NCBI chr 8:42,388,406...42,448,466 JBrowse link
G HPSE heparanase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:40,863,491...40,905,693
Ensembl chr 4:46,709,621...46,755,157 		JBrowse link
G IDS iduronate 2-sulfatase involved_in ISO (MGI:6140076|PMID:17876721) MGI PMID:17876721 MGI:6140076 NCBI chr  X:138,493,117...138,520,017
Ensembl chr  X:148,912,475...148,946,441 		JBrowse link
G IDUA alpha-L-iduronidase involved_in ISO (MGI:3605936|PMID:15979918)
(MGI:7310026|PMID:25854773)		 MGI PMID:15979918 PMID:25854773 MGI:3605936 MGI:7310026 NCBI chr 4:1,102,288...1,120,973
Ensembl chr 4:1,020,582...1,037,877 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242 		JBrowse link
G SGSH N-sulfoglucosamine sulfohydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:74,636,854...74,647,958
Ensembl chr17:80,371,790...80,381,703 		JBrowse link
mannose trimming involved in glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:5,133,927...5,162,485
Ensembl chr 3:5,234,123...5,262,003 		JBrowse link
G EDEM2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr20:31,443,590...31,475,430
Ensembl chr20:32,567,799...32,598,998 		JBrowse link
G EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:160,217,526...160,281,785
Ensembl chr 1:164,372,977...164,436,977 		JBrowse link
G MAN1A1 mannosidase alpha class 1A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:116,984,842...117,157,623
Ensembl chr 6:121,127,656...121,298,196 		JBrowse link
G MAN1B1 mannosidase alpha class 1B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:108,148,020...108,168,931
Ensembl chr 9:137,118,361...137,139,066 		JBrowse link
negative regulation of elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CST3 cystatin C involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:23,583,043...23,587,399
Ensembl chr20:23,935,942...23,940,425 		JBrowse link
proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:76,442,053...76,818,726
Ensembl chr 5:81,827,560...82,199,840 		JBrowse link
G BTK Bruton tyrosine kinase ISO RGD PMID:32083858 RGD:151665122 NCBI chr  X:90,551,874...90,588,786
Ensembl chr  X:100,684,017...100,725,187 		JBrowse link
ubiquitin-dependent glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:5,133,927...5,162,485
Ensembl chr 3:5,234,123...5,262,003 		JBrowse link
G EDEM2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:31,443,590...31,475,430
Ensembl chr20:32,567,799...32,598,998 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15412
    metabolic process 10019
      organic substance metabolic process 9643
        macromolecule metabolic process 7771
          macromolecule catabolic process 927
            glycoprotein catabolic process 27
              O-sialoglycoprotein catabolic process 0
              elastin catabolic process + 4
              mannoprotein catabolic process 0
              protein deglycosylation involved in glycoprotein catabolic process + 5
              proteoglycan catabolic process + 10
              ubiquitin-dependent glycoprotein ERAD pathway + 5
paths to the root